RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 NPR1P16066 1061 aa10.52□□□□□ -0.73
SF3B3-212ENST00000568539 CHRNA5P30532 468 aa10.52□□□□□ -0.73
SF3B3-212ENST00000568539 TGFB2P61812 414 aa10.52□□□□□ -0.73
SF3B3-212ENST00000568539 PTPN12Q05209 780 aaKnown RBP10.52□□□□□ -0.73
SF3B3-212ENST00000568539 DDX46Q7L014 1031 aaKnown RBP10.52□□□□□ -0.73
SF3B3-212ENST00000568539 CRAMP1Q96RY5 1269 aa10.52□□□□□ -0.73
SF3B3-212ENST00000568539 IGHDP01880 384 aa10.51□□□□□ -0.73
SF3B3-212ENST00000568539 KCNA3P22001 575 aa10.51□□□□□ -0.73
SF3B3-212ENST00000568539 GRAPQ13588 217 aa10.51□□□□□ -0.73
SF3B3-212ENST00000568539 STYK1Q6J9G0 422 aa10.51□□□□□ -0.73
SF3B3-212ENST00000568539 KLHDC4Q8TBB5 520 aa10.51□□□□□ -0.73
SF3B3-212ENST00000568539 GRAPLQ8TC17 118 aaPredicted RBP10.51□□□□□ -0.73
SF3B3-212ENST00000568539 CELF1Q92879 486 aaKnown RBP10.51□□□□□ -0.73
SF3B3-212ENST00000568539 MASTLQ96GX5 879 aa10.51□□□□□ -0.73
SF3B3-212ENST00000568539 RBM17Q96I25 401 aaKnown RBP10.51□□□□□ -0.73
SF3B3-212ENST00000568539 ZNF594Q96JF6 807 aaPredicted RBP10.51□□□□□ -0.73
SF3B3-212ENST00000568539 CDC5LQ99459 802 aaKnown RBP10.51□□□□□ -0.73
SF3B3-212ENST00000568539 FHDC1Q9C0D6 1143 aaPredicted RBP10.51□□□□□ -0.73
SF3B3-212ENST00000568539 RWDD1Q9H446 243 aaPredicted RBP10.51□□□□□ -0.73
SF3B3-212ENST00000568539 COPRSQ9NQ92 184 aa10.51□□□□□ -0.73
SF3B3-212ENST00000568539 PPP4R2Q9NY27 417 aa10.51□□□□□ -0.73
SF3B3-212ENST00000568539 PA2G4Q9UQ80 394 aaKnown RBP10.51□□□□□ -0.73
SF3B3-212ENST00000568539 NOP58Q9Y2X3 529 aaKnown RBP10.51□□□□□ -0.73
SF3B3-212ENST00000568539 COL4A1P02462 1669 aa10.5□□□□□ -0.73
SF3B3-212ENST00000568539 A0A0G2JLW4 131 aa10.5□□□□□ -0.73
SF3B3-212ENST00000568539 DPEP1P16444 411 aa10.5□□□□□ -0.73
SF3B3-212ENST00000568539 RPS8P62241 208 aaKnown RBP10.5□□□□□ -0.73
SF3B3-212ENST00000568539 TAF7LQ5H9L4 462 aa10.5□□□□□ -0.73
SF3B3-212ENST00000568539 ANKRD18AQ8IVF6 992 aa10.5□□□□□ -0.73
SF3B3-212ENST00000568539 DCTPP1Q9H773 170 aa10.5□□□□□ -0.73
SF3B3-212ENST00000568539 ANKRD31Q8N7Z5 1873 aa10.5□□□□□ -0.73
SF3B3-212ENST00000568539 SURF6O75683 361 aaKnown RBP10.49□□□□□ -0.73
SF3B3-212ENST00000568539 CIAO1O76071 339 aa10.49□□□□□ -0.73
SF3B3-212ENST00000568539 ALDH1B1P30837 517 aa10.49□□□□□ -0.73
SF3B3-212ENST00000568539 IGHMBP2P38935 993 aaKnown RBP10.49□□□□□ -0.73
SF3B3-212ENST00000568539 LDHAL6AQ6ZMR3 332 aa10.49□□□□□ -0.73
SF3B3-212ENST00000568539 NLGN2Q8NFZ4 835 aa10.49□□□□□ -0.73
SF3B3-212ENST00000568539 ZNF622Q969S3 477 aaKnown RBP eCLIP10.49□□□□□ -0.73
SF3B3-212ENST00000568539 CCDC136Q96JN2 1154 aa10.49□□□□□ -0.73
SF3B3-212ENST00000568539 PUS3Q9BZE2 481 aaKnown RBP10.49□□□□□ -0.73
SF3B3-212ENST00000568539 SIL1Q9H173 461 aa10.49□□□□□ -0.73
SF3B3-212ENST00000568539 BSDC1Q9NW68 430 aaPredicted RBP10.49□□□□□ -0.73
SF3B3-212ENST00000568539 EXOC6BQ9Y2D4 811 aa10.49□□□□□ -0.73
SF3B3-212ENST00000568539 GTF3C3Q9Y5Q9 886 aa10.49□□□□□ -0.73
SF3B3-212ENST00000568539 COL11A2P13942 1736 aaPredicted RBP10.48□□□□□ -0.73
SF3B3-212ENST00000568539 EYA2O00167 538 aa10.48□□□□□ -0.73
SF3B3-212ENST00000568539 BBOX1O75936 387 aa10.48□□□□□ -0.73
SF3B3-212ENST00000568539 LRRC24Q50LG9 513 aa10.48□□□□□ -0.73
SF3B3-212ENST00000568539 B4GALNT3Q6L9W6 998 aa10.48□□□□□ -0.73
SF3B3-212ENST00000568539 ATG9AQ7Z3C6 839 aa10.48□□□□□ -0.73
SF3B3-212ENST00000568539 CNKSR1Q969H4 720 aa10.48□□□□□ -0.73
SF3B3-212ENST00000568539 MPHOSPH8Q99549 860 aa10.48□□□□□ -0.73
SF3B3-212ENST00000568539 RIPOR2Q9Y4F9 1068 aa10.48□□□□□ -0.73
SF3B3-212ENST00000568539 KIF13BQ9NQT8 1826 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 PPEF1O14829 653 aaPredicted RBP10.47□□□□□ -0.73
SF3B3-212ENST00000568539 SASH1O94885 1247 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 IL15P40933 162 aaPredicted RBP10.47□□□□□ -0.73
SF3B3-212ENST00000568539 G3BP1Q13283 466 aaKnown RBP eCLIP10.47□□□□□ -0.735e-7■□□□□ 11.2
SF3B3-212ENST00000568539 HSP90AB4PQ58FF6 505 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 PRPF40BQ6NWY9 871 aaKnown RBP10.47□□□□□ -0.73
SF3B3-212ENST00000568539 TMC4Q7Z404 712 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 SLC51AQ86UW1 340 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 SMC5Q8IY18 1101 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 TTLL6Q8N841 843 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 GCC1Q96CN9 775 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 SYT17Q9BSW7 474 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 CNNM1Q9NRU3 951 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 PIM2Q9P1W9 311 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 TAOK2Q9UL54 1235 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 ATP6V0A2Q9Y487 856 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 KDM2BQ8NHM5 1336 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 KIAA1551Q9HCM1 1747 aa10.47□□□□□ -0.73
SF3B3-212ENST00000568539 RAB11FIP3O75154 756 aa10.46□□□□□ -0.73
SF3B3-212ENST00000568539 SP8Q8IXZ3 490 aa10.46□□□□□ -0.73
SF3B3-212ENST00000568539 C7orf43Q8WVR3 580 aa10.46□□□□□ -0.73
SF3B3-212ENST00000568539 MINPP1Q9UNW1 487 aa10.46□□□□□ -0.73
SF3B3-212ENST00000568539 MROH5Q6ZUA9 1318 aa10.46□□□□□ -0.73
SF3B3-212ENST00000568539 CHRNDQ07001 517 aa10.45□□□□□ -0.74
SF3B3-212ENST00000568539 OS9Q13438 667 aaPredicted RBP10.45□□□□□ -0.74
SF3B3-212ENST00000568539 METTL24Q5JXM2 366 aa10.45□□□□□ -0.74
SF3B3-212ENST00000568539 CENPQQ7L2Z9 268 aaPredicted RBP10.45□□□□□ -0.74
SF3B3-212ENST00000568539 ERC1Q8IUD2 1116 aa10.45□□□□□ -0.74
SF3B3-212ENST00000568539 VGLL2Q8N8G2 317 aa10.45□□□□□ -0.74
SF3B3-212ENST00000568539 RHPN1Q8TCX5 695 aa10.45□□□□□ -0.74
SF3B3-212ENST00000568539 KIF1BPQ96EK5 621 aa10.45□□□□□ -0.74
SF3B3-212ENST00000568539 TSHZ2Q9NRE2 1034 aa10.45□□□□□ -0.74
SF3B3-212ENST00000568539 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.45□□□□□ -0.74
SF3B3-212ENST00000568539 APBB1O00213 710 aa10.44□□□□□ -0.74
SF3B3-212ENST00000568539 PDE8BO95263 885 aa10.44□□□□□ -0.74
SF3B3-212ENST00000568539 TFCP2Q12800 502 aa10.44□□□□□ -0.74
SF3B3-212ENST00000568539 DALRD3Q5D0E6 543 aaKnown RBP10.44□□□□□ -0.74
SF3B3-212ENST00000568539 OLFM4Q6UX06 510 aa10.44□□□□□ -0.74
SF3B3-212ENST00000568539 HELBQ8NG08 1087 aaPredicted RBP10.44□□□□□ -0.74
SF3B3-212ENST00000568539 LRRCC1Q9C099 1032 aa10.44□□□□□ -0.74
SF3B3-212ENST00000568539 ANKRD2Q9GZV1 360 aa10.44□□□□□ -0.74
SF3B3-212ENST00000568539 CEP126Q9P2H0 1117 aa10.44□□□□□ -0.74
SF3B3-212ENST00000568539 SNED1Q8TER0 1413 aa10.43□□□□□ -0.74
SF3B3-212ENST00000568539 C21orf2O43822 256 aa10.43□□□□□ -0.74
SF3B3-212ENST00000568539 TAF5LO75529 589 aa10.43□□□□□ -0.74
SF3B3-212ENST00000568539 GPSM2P81274 684 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms