RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 IARSP41252 1262 aaKnown RBP27.42■■□□□ 1.98
CLN3-234ENST00000568472 EYA3Q99504 573 aa27.42■■□□□ 1.98
CLN3-234ENST00000568472 ZNF277Q9NRM2 450 aaPredicted RBP27.42■■□□□ 1.98
CLN3-234ENST00000568472 CNNM1Q9NRU3 951 aa27.42■■□□□ 1.98
CLN3-234ENST00000568472 GGA1Q9UJY5 639 aa27.42■■□□□ 1.98
CLN3-234ENST00000568472 ATP2B4P23634 1241 aa27.41■■□□□ 1.98
CLN3-234ENST00000568472 YY1P25490 414 aa27.41■■□□□ 1.98
CLN3-234ENST00000568472 FBXO3Q9UK99 471 aa27.41■■□□□ 1.98
CLN3-234ENST00000568472 LRRC37AA6NMS7 1700 aa27.41■■□□□ 1.98
CLN3-234ENST00000568472 TAF1P21675 1872 aa27.4■■□□□ 1.98
CLN3-234ENST00000568472 C6orf229H3BNL8 230 aa27.4■■□□□ 1.98
CLN3-234ENST00000568472 PRELPP51888 382 aa27.4■■□□□ 1.98
CLN3-234ENST00000568472 TBC1D16Q8TBP0 767 aa27.4■■□□□ 1.98
CLN3-234ENST00000568472 ZNF594Q96JF6 807 aaPredicted RBP27.4■■□□□ 1.98
CLN3-234ENST00000568472 LEMD3Q9Y2U8 911 aa27.4■■□□□ 1.98
CLN3-234ENST00000568472 COL4A1P02462 1669 aa27.4■■□□□ 1.98
CLN3-234ENST00000568472 SRGAP3O43295 1099 aa27.39■■□□□ 1.98
CLN3-234ENST00000568472 C20orf194Q5TEA3 1177 aa27.39■■□□□ 1.98
CLN3-234ENST00000568472 SLC51AQ86UW1 340 aa27.39■■□□□ 1.98
CLN3-234ENST00000568472 JDP2Q8WYK2 163 aa27.39■■□□□ 1.98
CLN3-234ENST00000568472 CHD4Q14839 1912 aa27.39■■□□□ 1.97
CLN3-234ENST00000568472 RFX5P48382 616 aaPredicted RBP27.38■■□□□ 1.97
CLN3-234ENST00000568472 CHRNDQ07001 517 aa27.38■■□□□ 1.97
CLN3-234ENST00000568472 WASHC4Q2M389 1173 aa27.38■■□□□ 1.97
CLN3-234ENST00000568472 POLLQ9UGP5 575 aa27.38■■□□□ 1.97
CLN3-234ENST00000568472 PPIP5K2O43314 1243 aa27.37■■□□□ 1.97
CLN3-234ENST00000568472 UFL1O94874 794 aa27.37■■□□□ 1.97
CLN3-234ENST00000568472 PTPN12Q05209 780 aaKnown RBP27.37■■□□□ 1.97
CLN3-234ENST00000568472 KIAA2012Q0VF49 1180 aa27.37■■□□□ 1.97
CLN3-234ENST00000568472 LARGE2Q8N3Y3 721 aa27.37■■□□□ 1.97
CLN3-234ENST00000568472 ZBTB40Q9NUA8 1239 aa27.37■■□□□ 1.97
CLN3-234ENST00000568472 RIPOR2Q9Y4F9 1068 aa27.37■■□□□ 1.97
CLN3-234ENST00000568472 MROH5Q6ZUA9 1318 aa27.37■■□□□ 1.97
CLN3-234ENST00000568472 ZC3H12CQ9C0D7 883 aaKnown RBP27.36■■□□□ 1.97
CLN3-234ENST00000568472 COPRSQ9NQ92 184 aa27.36■■□□□ 1.97
CLN3-234ENST00000568472 CIAO1O76071 339 aa27.35■■□□□ 1.97
CLN3-234ENST00000568472 ATP8B2P98198 1209 aa27.35■■□□□ 1.97
CLN3-234ENST00000568472 EYA2O00167 538 aa27.34■■□□□ 1.97
CLN3-234ENST00000568472 NIM1KQ8IY84 436 aa27.34■■□□□ 1.97
CLN3-234ENST00000568472 KCNJ4P48050 445 aa27.33■■□□□ 1.97
CLN3-234ENST00000568472 AOC3Q16853 763 aa27.33■■□□□ 1.97
CLN3-234ENST00000568472 PUS3Q9BZE2 481 aaKnown RBP27.33■■□□□ 1.97
CLN3-234ENST00000568472 ZNF804BA4D1E1 1349 aa27.33■■□□□ 1.97
CLN3-234ENST00000568472 SBF1O95248 1867 aa27.32■■□□□ 1.96
CLN3-234ENST00000568472 DPY19L2Q6NUT2 758 aa27.32■■□□□ 1.96
CLN3-234ENST00000568472 KLHDC4Q8TBB5 520 aa27.32■■□□□ 1.96
CLN3-234ENST00000568472 FZD9O00144 591 aa27.31■■□□□ 1.96
CLN3-234ENST00000568472 IL15P40933 162 aaPredicted RBP27.31■■□□□ 1.96
CLN3-234ENST00000568472 LRRC24Q50LG9 513 aa27.31■■□□□ 1.96
CLN3-234ENST00000568472 METTL24Q5JXM2 366 aa27.31■■□□□ 1.96
CLN3-234ENST00000568472 RPAP2Q8IXW5 612 aaPredicted RBP27.31■■□□□ 1.96
CLN3-234ENST00000568472 SSH3Q8TE77 659 aa27.31■■□□□ 1.96
CLN3-234ENST00000568472 C1orf115Q9H7X2 142 aa27.31■■□□□ 1.96
CLN3-234ENST00000568472 ZNRF3Q9ULT6 936 aa27.31■■□□□ 1.96
CLN3-234ENST00000568472 DUOX1Q9NRD9 1551 aa27.31■■□□□ 1.96
CLN3-234ENST00000568472 PNMA6EA0A0J9YXQ4 647 aa27.3■■□□□ 1.96
CLN3-234ENST00000568472 POLA2Q14181 598 aa27.3■■□□□ 1.96
CLN3-234ENST00000568472 LTBP1Q14766 1721 aa27.3■■□□□ 1.96
CLN3-234ENST00000568472 G3V3G9 751 aa27.29■■□□□ 1.96
CLN3-234ENST00000568472 UBE4AQ14139 1066 aa27.29■■□□□ 1.96
CLN3-234ENST00000568472 DCAF8Q5TAQ9 597 aa27.29■■□□□ 1.96
CLN3-234ENST00000568472 CEP85Q6P2H3 762 aa27.29■■□□□ 1.96
CLN3-234ENST00000568472 C15orf52Q6ZUT6 534 aaKnown RBP27.29■■□□□ 1.96
CLN3-234ENST00000568472 HELBQ8NG08 1087 aaPredicted RBP27.29■■□□□ 1.96
CLN3-234ENST00000568472 SUPT16HQ9Y5B9 1047 aaKnown RBP27.29■■□□□ 1.96
CLN3-234ENST00000568472 MED23Q9ULK4 1368 aa27.29■■□□□ 1.96
CLN3-234ENST00000568472 RIMBP2O15034 1052 aa27.28■■□□□ 1.96
CLN3-234ENST00000568472 TAF5LO75529 589 aa27.28■■□□□ 1.96
CLN3-234ENST00000568472 PDE8BO95263 885 aa27.28■■□□□ 1.96
CLN3-234ENST00000568472 EIF6P56537 245 aaKnown RBP27.28■■□□□ 1.96
CLN3-234ENST00000568472 KDM2BQ8NHM5 1336 aa27.27■■□□□ 1.96
CLN3-234ENST00000568472 GLTPD2A6NH11 291 aa27.27■■□□□ 1.96
CLN3-234ENST00000568472 AAMPQ13685 434 aa27.27■■□□□ 1.96
CLN3-234ENST00000568472 ATG9AQ7Z3C6 839 aa27.27■■□□□ 1.96
CLN3-234ENST00000568472 SIL1Q9H173 461 aa27.27■■□□□ 1.96
CLN3-234ENST00000568472 CEP126Q9P2H0 1117 aa27.27■■□□□ 1.96
CLN3-234ENST00000568472 HMMRO75330 724 aa27.26■■□□□ 1.95
CLN3-234ENST00000568472 PA2G4Q9UQ80 394 aaKnown RBP27.26■■□□□ 1.95
CLN3-234ENST00000568472 G3BP1Q13283 466 aaKnown RBP eCLIP27.25■■□□□ 1.95
CLN3-234ENST00000568472 VGLL2Q8N8G2 317 aa27.25■■□□□ 1.95
CLN3-234ENST00000568472 DICER1Q9UPY3 1922 aaKnown RBP27.25■■□□□ 1.95
CLN3-234ENST00000568472 SPEF2Q9C093 1822 aa27.25■■□□□ 1.95
CLN3-234ENST00000568472 PODNQ7Z5L7 613 aa27.24■■□□□ 1.95
CLN3-234ENST00000568472 GPR101Q96P66 508 aaPredicted RBP27.24■■□□□ 1.95
CLN3-234ENST00000568472 COA1Q9GZY4 146 aa27.24■■□□□ 1.95
CLN3-234ENST00000568472 WTIPA6NIX2 430 aaPredicted RBP27.23■■□□□ 1.95
CLN3-234ENST00000568472 TNIP1Q15025 636 aa27.23■■□□□ 1.95
CLN3-234ENST00000568472 PUM3Q15397 648 aaKnown RBP27.23■■□□□ 1.95
CLN3-234ENST00000568472 NOP58Q9Y2X3 529 aaKnown RBP27.23■■□□□ 1.95
CLN3-234ENST00000568472 CCDC88AQ3V6T2 1871 aa27.22■■□□□ 1.95
CLN3-234ENST00000568472 ECE2O60344 883 aa27.22■■□□□ 1.95
CLN3-234ENST00000568472 DOK7Q18PE1 504 aa27.22■■□□□ 1.95
CLN3-234ENST00000568472 GPC2Q8N158 579 aa27.22■■□□□ 1.95
CLN3-234ENST00000568472 SURF6O75683 361 aaKnown RBP27.21■■□□□ 1.95
CLN3-234ENST00000568472 ZNF784Q8NCA9 323 aaPredicted RBP27.21■■□□□ 1.95
CLN3-234ENST00000568472 CRBNQ96SW2 442 aa27.21■■□□□ 1.95
CLN3-234ENST00000568472 DBNDD1Q9H9R9 158 aa27.21■■□□□ 1.95
CLN3-234ENST00000568472 IFIT1P09914 478 aaKnown RBP27.2■■□□□ 1.94
CLN3-234ENST00000568472 HSP90AB4PQ58FF6 505 aa27.2■■□□□ 1.94
CLN3-234ENST00000568472 ZNF804AQ7Z570 1209 aa27.2■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms