RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 CCDC30Q5VVM6 783 aa19.27■□□□□ 0.68
CLN3-228ENST00000567804 CDC37L1Q7L3B6 337 aa19.27■□□□□ 0.68
CLN3-228ENST00000567804 METTL22Q9BUU2 404 aaPredicted RBP19.27■□□□□ 0.68
CLN3-228ENST00000567804 CWC25Q9NXE8 425 aaPredicted RBP19.27■□□□□ 0.68
CLN3-228ENST00000567804 PODXL2Q9NZ53 605 aa19.27■□□□□ 0.68
CLN3-228ENST00000567804 CACNA1FO60840 1977 aa19.26■□□□□ 0.67
CLN3-228ENST00000567804 PDE8AO60658 829 aa19.26■□□□□ 0.67
CLN3-228ENST00000567804 DDX58O95786 925 aaKnown RBP19.26■□□□□ 0.67
CLN3-228ENST00000567804 DOK7Q18PE1 504 aa19.26■□□□□ 0.67
CLN3-228ENST00000567804 CCDC152Q4G0S7 254 aa19.26■□□□□ 0.67
CLN3-228ENST00000567804 SAMD7Q7Z3H4 446 aa19.26■□□□□ 0.67
CLN3-228ENST00000567804 HHIPL1Q96JK4 782 aa19.26■□□□□ 0.67
CLN3-228ENST00000567804 CHMP4AQ9BY43 222 aa19.26■□□□□ 0.67
CLN3-228ENST00000567804 KCNQ5Q9NR82 932 aa19.26■□□□□ 0.67
CLN3-228ENST00000567804 RPS12P25398 132 aaKnown RBP19.25■□□□□ 0.67
CLN3-228ENST00000567804 TSPYL6Q8N831 410 aa19.25■□□□□ 0.67
CLN3-228ENST00000567804 JARID2Q92833 1246 aaPredicted RBP19.25■□□□□ 0.67
CLN3-228ENST00000567804 ZNF408Q9H9D4 720 aa19.25■□□□□ 0.67
CLN3-228ENST00000567804 ZNF646O15015 1829 aaPredicted RBP19.25■□□□□ 0.67
CLN3-228ENST00000567804 AOC2O75106 756 aa19.24■□□□□ 0.67
CLN3-228ENST00000567804 UFL1O94874 794 aa19.24■□□□□ 0.67
CLN3-228ENST00000567804 EGFRP00533 1210 aa19.24■□□□□ 0.67
CLN3-228ENST00000567804 MAP2K2P36507 400 aa19.24■□□□□ 0.67
CLN3-228ENST00000567804 TBC1D10BQ4KMP7 808 aaPredicted RBP19.24■□□□□ 0.67
CLN3-228ENST00000567804 BEGAINQ9BUH8 593 aa19.24■□□□□ 0.67
CLN3-228ENST00000567804 ZC3H12CQ9C0D7 883 aaKnown RBP19.24■□□□□ 0.67
CLN3-228ENST00000567804 MAP3K2Q9Y2U5 619 aa19.24■□□□□ 0.67
CLN3-228ENST00000567804 CCDC184Q52MB2 194 aa19.23■□□□□ 0.67
CLN3-228ENST00000567804 USP48Q86UV5 1035 aa19.23■□□□□ 0.67
CLN3-228ENST00000567804 TSR2Q969E8 191 aaKnown RBP19.23■□□□□ 0.67
CLN3-228ENST00000567804 CCDC85AQ96PX6 553 aaPredicted RBP19.23■□□□□ 0.67
CLN3-228ENST00000567804 ANKIB1Q9P2G1 1089 aa19.23■□□□□ 0.67
CLN3-228ENST00000567804 GGA1Q9UJY5 639 aa19.23■□□□□ 0.67
CLN3-228ENST00000567804 KSR2Q6VAB6 950 aa19.22■□□□□ 0.67
CLN3-228ENST00000567804 ZNF609O15014 1411 aa19.22■□□□□ 0.67
CLN3-228ENST00000567804 PI4KAP2A4QPH2 592 aa19.21■□□□□ 0.67
CLN3-228ENST00000567804 IGKV5-2P06315 115 aa19.21■□□□□ 0.67
CLN3-228ENST00000567804 VIL1P09327 827 aaKnown RBP19.21■□□□□ 0.67
CLN3-228ENST00000567804 CCDC27Q2M243 656 aa19.21■□□□□ 0.67
CLN3-228ENST00000567804 PI4KAP1Q8N8J0 262 aa19.21■□□□□ 0.67
CLN3-228ENST00000567804 XDHP47989 1333 aa19.21■□□□□ 0.67
CLN3-228ENST00000567804 CASP8AP2Q9UKL3 1982 aa19.21■□□□□ 0.67
CLN3-228ENST00000567804 RBM26Q5T8P6 1007 aaKnown RBP19.2■□□□□ 0.66
CLN3-228ENST00000567804 DLK2Q6UY11 383 aa19.2■□□□□ 0.66
CLN3-228ENST00000567804 KRT26Q7Z3Y9 468 aa19.2■□□□□ 0.66
CLN3-228ENST00000567804 ANKRD18AQ8IVF6 992 aa19.2■□□□□ 0.66
CLN3-228ENST00000567804 STK31Q9BXU1 1019 aa19.2■□□□□ 0.66
CLN3-228ENST00000567804 G3V3G9 751 aa19.19■□□□□ 0.66
CLN3-228ENST00000567804 CTSWP56202 376 aa19.19■□□□□ 0.66
CLN3-228ENST00000567804 KIF4BQ2VIQ3 1234 aa19.19■□□□□ 0.66
CLN3-228ENST00000567804 DCAF8Q5TAQ9 597 aa19.19■□□□□ 0.66
CLN3-228ENST00000567804 WWC1Q8IX03 1113 aa19.19■□□□□ 0.66
CLN3-228ENST00000567804 ADM5C9JUS6 153 aa19.18■□□□□ 0.66
CLN3-228ENST00000567804 BRPF1P55201 1214 aaPredicted RBP19.18■□□□□ 0.66
CLN3-228ENST00000567804 HUNKP57058 714 aa19.18■□□□□ 0.66
CLN3-228ENST00000567804 NEXNQ0ZGT2 675 aa19.18■□□□□ 0.66
CLN3-228ENST00000567804 TWISTNBQ3B726 338 aaPredicted RBP19.18■□□□□ 0.66
CLN3-228ENST00000567804 DCPSQ96C86 337 aaKnown RBP19.18■□□□□ 0.66
CLN3-228ENST00000567804 CDC5LQ99459 802 aaKnown RBP19.18■□□□□ 0.66
CLN3-228ENST00000567804 TSKSQ9UJT2 592 aa19.18■□□□□ 0.66
CLN3-228ENST00000567804 AKAP11Q9UKA4 1901 aa19.17■□□□□ 0.66
CLN3-228ENST00000567804 CA12O43570 354 aa19.17■□□□□ 0.66
CLN3-228ENST00000567804 ATP2B4P23634 1241 aa19.17■□□□□ 0.66
CLN3-228ENST00000567804 CWF19L2Q2TBE0 894 aaKnown RBP19.17■□□□□ 0.66
CLN3-228ENST00000567804 RSBN1LQ6PCB5 846 aaPredicted RBP19.17■□□□□ 0.66
CLN3-228ENST00000567804 G2E3Q7L622 706 aa19.17■□□□□ 0.66
CLN3-228ENST00000567804 AGBL3Q8NEM8 1001 aa19.17■□□□□ 0.66
CLN3-228ENST00000567804 TTLL11Q8NHH1 800 aa19.17■□□□□ 0.66
CLN3-228ENST00000567804 ABHD8Q96I13 439 aa19.17■□□□□ 0.66
CLN3-228ENST00000567804 A0A1B0GUL6 1792 aa19.16■□□□□ 0.66
CLN3-228ENST00000567804 NEURL1BA8MQ27 555 aa19.16■□□□□ 0.66
CLN3-228ENST00000567804 NOGQ13253 232 aa19.16■□□□□ 0.66
CLN3-228ENST00000567804 GREM2Q9H772 168 aa19.16■□□□□ 0.66
CLN3-228ENST00000567804 GBA2Q9HCG7 927 aaPredicted RBP19.16■□□□□ 0.66
CLN3-228ENST00000567804 GGA3Q9NZ52 723 aa19.16■□□□□ 0.66
CLN3-228ENST00000567804 IL16Q14005 1332 aa19.16■□□□□ 0.66
CLN3-228ENST00000567804 MED23Q9ULK4 1368 aa19.16■□□□□ 0.66
CLN3-228ENST00000567804 ZNF280AP59817 542 aaPredicted RBP19.15■□□□□ 0.66
CLN3-228ENST00000567804 ASTN2O75129 1339 aaPredicted RBP19.15■□□□□ 0.66
CLN3-228ENST00000567804 SLC4A2P04920 1241 aa19.14■□□□□ 0.65
CLN3-228ENST00000567804 NCBP3Q53F19 620 aaKnown RBP19.14■□□□□ 0.65
CLN3-228ENST00000567804 RGMBQ6NW40 437 aa19.14■□□□□ 0.65
CLN3-228ENST00000567804 PODNQ7Z5L7 613 aa19.14■□□□□ 0.65
CLN3-228ENST00000567804 SULF1Q8IWU6 871 aa19.14■□□□□ 0.65
CLN3-228ENST00000567804 C2orf69Q8N8R5 385 aa19.14■□□□□ 0.65
CLN3-228ENST00000567804 ZIC5Q96T25 663 aa19.14■□□□□ 0.65
CLN3-228ENST00000567804 GMLQ99445 158 aa19.14■□□□□ 0.65
CLN3-228ENST00000567804 BSDC1Q9NW68 430 aaPredicted RBP19.14■□□□□ 0.65
CLN3-228ENST00000567804 MINPP1Q9UNW1 487 aa19.14■□□□□ 0.65
CLN3-228ENST00000567804 WTIPA6NIX2 430 aaPredicted RBP19.13■□□□□ 0.65
CLN3-228ENST00000567804 H7C1W4 665 aa19.13■□□□□ 0.65
CLN3-228ENST00000567804 UBE3BQ7Z3V4 1068 aa19.13■□□□□ 0.65
CLN3-228ENST00000567804 PAPPA2Q9BXP8 1791 aa19.12■□□□□ 0.65
CLN3-228ENST00000567804 USP17L3A6NCW0 530 aa19.12■□□□□ 0.65
CLN3-228ENST00000567804 USP17L4A6NCW7 530 aa19.12■□□□□ 0.65
CLN3-228ENST00000567804 FAM155AB1AL88 458 aaPredicted RBP19.12■□□□□ 0.65
CLN3-228ENST00000567804 FLIIQ13045 1269 aa19.12■□□□□ 0.65
CLN3-228ENST00000567804 SCARF1Q14162 830 aa19.12■□□□□ 0.65
CLN3-228ENST00000567804 USP17L1Q7RTZ2 530 aa19.12■□□□□ 0.65
CLN3-228ENST00000567804 CDCA5Q96FF9 252 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms