RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 XDHP47989 1333 aa23.78■■□□□ 1.4
SMPD3-209ENST00000567223 CSF1RP07333 972 aa23.77■■□□□ 1.4
SMPD3-209ENST00000567223 RPS12P25398 132 aaKnown RBP23.77■■□□□ 1.4
SMPD3-209ENST00000567223 MAP1SQ66K74 1059 aaPredicted RBP23.77■■□□□ 1.4
SMPD3-209ENST00000567223 UBE3BQ7Z3V4 1068 aa23.77■■□□□ 1.4
SMPD3-209ENST00000567223 JARID2Q92833 1246 aaPredicted RBP23.77■■□□□ 1.4
SMPD3-209ENST00000567223 ZC3H12CQ9C0D7 883 aaKnown RBP23.77■■□□□ 1.4
SMPD3-209ENST00000567223 GGA1Q9UJY5 639 aa23.77■■□□□ 1.4
SMPD3-209ENST00000567223 CNTNAP1P78357 1384 aa23.77■■□□□ 1.4
SMPD3-209ENST00000567223 RAD17O75943 681 aa23.76■■□□□ 1.39
SMPD3-209ENST00000567223 GREM2Q9H772 168 aa23.76■■□□□ 1.39
SMPD3-209ENST00000567223 ANKIB1Q9P2G1 1089 aa23.76■■□□□ 1.39
SMPD3-209ENST00000567223 ECE2O60344 883 aa23.75■■□□□ 1.39
SMPD3-209ENST00000567223 UFL1O94874 794 aa23.75■■□□□ 1.39
SMPD3-209ENST00000567223 BEND3Q5T5X7 828 aa23.75■■□□□ 1.39
SMPD3-209ENST00000567223 ATP2B4P23634 1241 aa23.74■■□□□ 1.39
SMPD3-209ENST00000567223 BCL2L13Q9BXK5 485 aa23.74■■□□□ 1.39
SMPD3-209ENST00000567223 DBNDD1Q9H9R9 158 aa23.74■■□□□ 1.39
SMPD3-209ENST00000567223 E9PSI1 815 aa23.73■■□□□ 1.39
SMPD3-209ENST00000567223 CCER2I3L3R5 266 aa23.73■■□□□ 1.39
SMPD3-209ENST00000567223 PSMD14O00487 310 aa23.73■■□□□ 1.39
SMPD3-209ENST00000567223 CCDC85AQ96PX6 553 aaPredicted RBP23.73■■□□□ 1.39
SMPD3-209ENST00000567223 PSME4Q14997 1843 aa23.73■■□□□ 1.39
SMPD3-209ENST00000567223 RIMBP2O15034 1052 aa23.72■■□□□ 1.39
SMPD3-209ENST00000567223 VIL1P09327 827 aaKnown RBP23.72■■□□□ 1.39
SMPD3-209ENST00000567223 CNOT7Q9UIV1 285 aaKnown RBP23.72■■□□□ 1.39
SMPD3-209ENST00000567223 MINPP1Q9UNW1 487 aa23.72■■□□□ 1.39
SMPD3-209ENST00000567223 MED23Q9ULK4 1368 aa23.72■■□□□ 1.39
SMPD3-209ENST00000567223 RASSF10A6NK89 507 aa23.71■■□□□ 1.39
SMPD3-209ENST00000567223 H7C1D1 291 aa23.7■■□□□ 1.38
SMPD3-209ENST00000567223 PODNQ7Z5L7 613 aa23.7■■□□□ 1.38
SMPD3-209ENST00000567223 SCN9AQ15858 1988 aa23.69■■□□□ 1.38
SMPD3-209ENST00000567223 ALDH1L1O75891 902 aa23.69■■□□□ 1.38
SMPD3-209ENST00000567223 ITGA6P23229 1130 aa23.69■■□□□ 1.38
SMPD3-209ENST00000567223 IGHMBP2P38935 993 aaKnown RBP23.69■■□□□ 1.38
SMPD3-209ENST00000567223 MICALL2Q8IY33 904 aa23.69■■□□□ 1.38
SMPD3-209ENST00000567223 TRPM7Q96QT4 1865 aa23.68■■□□□ 1.38
SMPD3-209ENST00000567223 F6X3S4 739 aa23.68■■□□□ 1.38
SMPD3-209ENST00000567223 HIRAP54198 1017 aaPredicted RBP23.68■■□□□ 1.38
SMPD3-209ENST00000567223 DOK7Q18PE1 504 aa23.68■■□□□ 1.38
SMPD3-209ENST00000567223 GPR101Q96P66 508 aaPredicted RBP23.68■■□□□ 1.38
SMPD3-209ENST00000567223 LEMD3Q9Y2U8 911 aa23.68■■□□□ 1.38
SMPD3-209ENST00000567223 ZBTB12Q9Y330 459 aaPredicted RBP23.68■■□□□ 1.38
SMPD3-209ENST00000567223 GRM8O00222 908 aa23.67■■□□□ 1.38
SMPD3-209ENST00000567223 CCT4P50991 539 aaKnown RBP23.67■■□□□ 1.38
SMPD3-209ENST00000567223 SLFN5Q08AF3 891 aa23.67■■□□□ 1.38
SMPD3-209ENST00000567223 FAM161AQ3B820 660 aa23.67■■□□□ 1.38
SMPD3-209ENST00000567223 AGBL3Q8NEM8 1001 aa23.67■■□□□ 1.38
SMPD3-209ENST00000567223 ANKRD2Q9GZV1 360 aa23.67■■□□□ 1.38
SMPD3-209ENST00000567223 MKRN1Q9UHC7 482 aaKnown RBP23.67■■□□□ 1.38
SMPD3-209ENST00000567223 SPEF2Q9C093 1822 aa23.67■■□□□ 1.38
SMPD3-209ENST00000567223 PTPRCP08575 1304 aa23.66■■□□□ 1.38
SMPD3-209ENST00000567223 FOXO4P98177 505 aa23.66■■□□□ 1.38
SMPD3-209ENST00000567223 TRPM4Q8TD43 1214 aa23.66■■□□□ 1.38
SMPD3-209ENST00000567223 KCNQ5Q9NR82 932 aa23.66■■□□□ 1.38
SMPD3-209ENST00000567223 G3V3G9 751 aa23.65■■□□□ 1.38
SMPD3-209ENST00000567223 DCAF8Q5TAQ9 597 aa23.65■■□□□ 1.38
SMPD3-209ENST00000567223 CDC37L1Q7L3B6 337 aa23.65■■□□□ 1.38
SMPD3-209ENST00000567223 TRMT2AQ8IZ69 625 aaKnown RBP23.65■■□□□ 1.38
SMPD3-209ENST00000567223 MPHOSPH8Q99549 860 aa23.65■■□□□ 1.38
SMPD3-209ENST00000567223 THSD7BQ9C0I4 1608 aa23.65■■□□□ 1.38
SMPD3-209ENST00000567223 UTYO14607 1347 aa23.64■■□□□ 1.38
SMPD3-209ENST00000567223 ANKRD18BA2A2Z9 1011 aa23.64■■□□□ 1.37
SMPD3-209ENST00000567223 ZNF280AP59817 542 aaPredicted RBP23.64■■□□□ 1.37
SMPD3-209ENST00000567223 DEFB115Q30KQ5 88 aa23.64■■□□□ 1.37
SMPD3-209ENST00000567223 CST9Q5W186 159 aa23.64■■□□□ 1.37
SMPD3-209ENST00000567223 RSBN1LQ6PCB5 846 aaPredicted RBP23.64■■□□□ 1.37
SMPD3-209ENST00000567223 SRCIN1Q9C0H9 1055 aa23.64■■□□□ 1.37
SMPD3-209ENST00000567223 CT47B1P0C2W7 299 aaPredicted RBP23.63■■□□□ 1.37
SMPD3-209ENST00000567223 HSPA1AP0DMV8 641 aaKnown RBP23.63■■□□□ 1.37
SMPD3-209ENST00000567223 HSPA1BP0DMV9 641 aaKnown RBP23.63■■□□□ 1.37
SMPD3-209ENST00000567223 MMP14P50281 582 aa23.63■■□□□ 1.37
SMPD3-209ENST00000567223 IFFO2Q5TF58 517 aa23.63■■□□□ 1.37
SMPD3-209ENST00000567223 MRPL50Q8N5N7 158 aaKnown RBP23.63■■□□□ 1.37
SMPD3-209ENST00000567223 HHIPL1Q96JK4 782 aa23.63■■□□□ 1.37
SMPD3-209ENST00000567223 GMLQ99445 158 aa23.63■■□□□ 1.37
SMPD3-209ENST00000567223 COA1Q9GZY4 146 aa23.63■■□□□ 1.37
SMPD3-209ENST00000567223 ZNF646O15015 1829 aaPredicted RBP23.62■■□□□ 1.37
SMPD3-209ENST00000567223 SHTN1A0MZ66 631 aa23.62■■□□□ 1.37
SMPD3-209ENST00000567223 VEGFBP49765 207 aa23.62■■□□□ 1.37
SMPD3-209ENST00000567223 IFIT5Q13325 482 aaKnown RBP23.62■■□□□ 1.37
SMPD3-209ENST00000567223 ALDH1L2Q3SY69 923 aa23.62■■□□□ 1.37
SMPD3-209ENST00000567223 TLL2Q9Y6L7 1015 aa23.62■■□□□ 1.37
SMPD3-209ENST00000567223 ZNF804BA4D1E1 1349 aa23.61■■□□□ 1.37
SMPD3-209ENST00000567223 USP17L3A6NCW0 530 aa23.61■■□□□ 1.37
SMPD3-209ENST00000567223 USP17L4A6NCW7 530 aa23.61■■□□□ 1.37
SMPD3-209ENST00000567223 TRAF5O00463 557 aa23.61■■□□□ 1.37
SMPD3-209ENST00000567223 C15orf52Q6ZUT6 534 aaKnown RBP23.61■■□□□ 1.37
SMPD3-209ENST00000567223 USP17L1Q7RTZ2 530 aa23.61■■□□□ 1.37
SMPD3-209ENST00000567223 SAMD7Q7Z3H4 446 aa23.61■■□□□ 1.37
SMPD3-209ENST00000567223 MYO3BQ8WXR4 1341 aa23.6■■□□□ 1.37
SMPD3-209ENST00000567223 GLIS2Q9BZE0 524 aaPredicted RBP23.6■■□□□ 1.37
SMPD3-209ENST00000567223 C9orf78Q9NZ63 289 aaPredicted RBP23.6■■□□□ 1.37
SMPD3-209ENST00000567223 A0A1B0GUL6 1792 aa23.6■■□□□ 1.37
SMPD3-209ENST00000567223 EGFRP00533 1210 aa23.59■■□□□ 1.37
SMPD3-209ENST00000567223 CHRNDQ07001 517 aa23.59■■□□□ 1.37
SMPD3-209ENST00000567223 STRIP1Q5VSL9 837 aa23.59■■□□□ 1.37
SMPD3-209ENST00000567223 ABT1Q9ULW3 272 aaKnown RBP23.59■■□□□ 1.37
SMPD3-209ENST00000567223 IRS2Q9Y4H2 1338 aa23.59■■□□□ 1.37
SMPD3-209ENST00000567223 WTIPA6NIX2 430 aaPredicted RBP23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms