RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 LEMD3Q9Y2U8 911 aa13.78□□□□□ -0.2
CLN3-224ENST00000566816 LTBP3Q9NS15 1303 aa13.78□□□□□ -0.2
CLN3-224ENST00000566816 RAB11FIP3O75154 756 aa13.77□□□□□ -0.21
CLN3-224ENST00000566816 MYH3P11055 1940 aa13.77□□□□□ -0.21
CLN3-224ENST00000566816 XDHP47989 1333 aa13.77□□□□□ -0.21
CLN3-224ENST00000566816 G3BP1Q13283 466 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLN3-224ENST00000566816 ATG9AQ7Z3C6 839 aa13.77□□□□□ -0.21
CLN3-224ENST00000566816 MPNDQ8N594 471 aa13.77□□□□□ -0.21
CLN3-224ENST00000566816 SUPT20HQ8NEM7 779 aa13.77□□□□□ -0.21
CLN3-224ENST00000566816 DCTPP1Q9H773 170 aa13.77□□□□□ -0.21
CLN3-224ENST00000566816 DLEC1Q9Y238 1755 aa13.77□□□□□ -0.21
CLN3-224ENST00000566816 SNED1Q8TER0 1413 aa13.76□□□□□ -0.21
CLN3-224ENST00000566816 SURF6O75683 361 aaKnown RBP13.76□□□□□ -0.21
CLN3-224ENST00000566816 PDE8BO95263 885 aa13.76□□□□□ -0.21
CLN3-224ENST00000566816 ATP2B4P23634 1241 aa13.76□□□□□ -0.21
CLN3-224ENST00000566816 CHRNDQ07001 517 aa13.76□□□□□ -0.21
CLN3-224ENST00000566816 UBE4AQ14139 1066 aa13.76□□□□□ -0.21
CLN3-224ENST00000566816 GPR162Q16538 588 aa13.76□□□□□ -0.21
CLN3-224ENST00000566816 C15orf52Q6ZUT6 534 aaKnown RBP13.76□□□□□ -0.21
CLN3-224ENST00000566816 ERC1Q8IUD2 1116 aa13.76□□□□□ -0.21
CLN3-224ENST00000566816 RWDD1Q9H446 243 aaPredicted RBP13.76□□□□□ -0.21
CLN3-224ENST00000566816 GPR108Q9NPR9 543 aa13.76□□□□□ -0.21
CLN3-224ENST00000566816 COL11A2P13942 1736 aaPredicted RBP13.76□□□□□ -0.21
CLN3-224ENST00000566816 ZBTB22O15209 634 aa13.75□□□□□ -0.21
CLN3-224ENST00000566816 YBX3P16989 372 aaKnown RBP eCLIP13.75□□□□□ -0.21
CLN3-224ENST00000566816 FKBP4Q02790 459 aaKnown RBP eCLIP13.75□□□□□ -0.21
CLN3-224ENST00000566816 LRRC24Q50LG9 513 aa13.75□□□□□ -0.21
CLN3-224ENST00000566816 DPP8Q6V1X1 898 aaPredicted RBP13.75□□□□□ -0.21
CLN3-224ENST00000566816 VGLL2Q8N8G2 317 aa13.75□□□□□ -0.21
CLN3-224ENST00000566816 KLHDC4Q8TBB5 520 aa13.75□□□□□ -0.21
CLN3-224ENST00000566816 PUS3Q9BZE2 481 aaKnown RBP13.75□□□□□ -0.21
CLN3-224ENST00000566816 CEP126Q9P2H0 1117 aa13.75□□□□□ -0.21
CLN3-224ENST00000566816 NSFL1CQ9UNZ2 370 aaKnown RBP13.75□□□□□ -0.21
CLN3-224ENST00000566816 PA2G4Q9UQ80 394 aaKnown RBP13.75□□□□□ -0.21
CLN3-224ENST00000566816 GOLGB1Q14789 3259 aaKnown RBP13.75□□□□□ -0.21
CLN3-224ENST00000566816 BRCA1P38398 1863 aaKnown RBP13.74□□□□□ -0.21
CLN3-224ENST00000566816 SLX4Q8IY92 1834 aa13.74□□□□□ -0.21
CLN3-224ENST00000566816 GPSM2P81274 684 aa13.74□□□□□ -0.21
CLN3-224ENST00000566816 TBC1D16Q8TBP0 767 aa13.74□□□□□ -0.21
CLN3-224ENST00000566816 ANKIB1Q9P2G1 1089 aa13.74□□□□□ -0.21
CLN3-224ENST00000566816 GGA1Q9UJY5 639 aa13.74□□□□□ -0.21
CLN3-224ENST00000566816 AKAP2Q9Y2D5 859 aa13.74□□□□□ -0.21
CLN3-224ENST00000566816 NFKBIEO00221 500 aa13.73□□□□□ -0.21
CLN3-224ENST00000566816 IRX6P78412 446 aaPredicted RBP13.73□□□□□ -0.21
CLN3-224ENST00000566816 METTL24Q5JXM2 366 aa13.73□□□□□ -0.21
CLN3-224ENST00000566816 ARHGAP27Q6ZUM4 889 aa13.73□□□□□ -0.21
CLN3-224ENST00000566816 GCC1Q96CN9 775 aa13.73□□□□□ -0.21
CLN3-224ENST00000566816 EYA3Q99504 573 aa13.73□□□□□ -0.21
CLN3-224ENST00000566816 TAOK3Q9H2K8 898 aa13.73□□□□□ -0.21
CLN3-224ENST00000566816 ZNF804BA4D1E1 1349 aa13.72□□□□□ -0.21
CLN3-224ENST00000566816 SASH1O94885 1247 aa13.72□□□□□ -0.21
CLN3-224ENST00000566816 FGFR2P21802 821 aa13.72□□□□□ -0.21
CLN3-224ENST00000566816 PUM3Q15397 648 aaKnown RBP13.72□□□□□ -0.21
CLN3-224ENST00000566816 LPIN2Q92539 896 aa13.72□□□□□ -0.21
CLN3-224ENST00000566816 KIF1BPQ96EK5 621 aa13.72□□□□□ -0.21
CLN3-224ENST00000566816 SIL1Q9H173 461 aa13.72□□□□□ -0.21
CLN3-224ENST00000566816 POLLQ9UGP5 575 aa13.72□□□□□ -0.21
CLN3-224ENST00000566816 LMNB1P20700 586 aa13.71□□□□□ -0.21
CLN3-224ENST00000566816 KIAA2012Q0VF49 1180 aa13.71□□□□□ -0.21
CLN3-224ENST00000566816 OLFM4Q6UX06 510 aa13.71□□□□□ -0.21
CLN3-224ENST00000566816 SMC5Q8IY18 1101 aa13.71□□□□□ -0.21
CLN3-224ENST00000566816 ZC3H12CQ9C0D7 883 aaKnown RBP13.71□□□□□ -0.21
CLN3-224ENST00000566816 ZNF219Q9P2Y4 722 aaPredicted RBP13.71□□□□□ -0.21
CLN3-224ENST00000566816 ARFGEF1Q9Y6D6 1849 aa13.71□□□□□ -0.22
CLN3-224ENST00000566816 C6orf229H3BNL8 230 aa13.7□□□□□ -0.22
CLN3-224ENST00000566816 TAF5LO75529 589 aa13.7□□□□□ -0.22
CLN3-224ENST00000566816 UFL1O94874 794 aa13.7□□□□□ -0.22
CLN3-224ENST00000566816 IFIT1P09914 478 aaKnown RBP13.7□□□□□ -0.22
CLN3-224ENST00000566816 OS9Q13438 667 aaPredicted RBP13.7□□□□□ -0.22
CLN3-224ENST00000566816 WASHC4Q2M389 1173 aa13.7□□□□□ -0.22
CLN3-224ENST00000566816 PELP1Q8IZL8 1130 aaKnown RBP13.7□□□□□ -0.22
CLN3-224ENST00000566816 RHPN1Q8TCX5 695 aa13.7□□□□□ -0.22
CLN3-224ENST00000566816 LRRC37AA6NMS7 1700 aa13.7□□□□□ -0.22
CLN3-224ENST00000566816 MED23Q9ULK4 1368 aa13.7□□□□□ -0.22
CLN3-224ENST00000566816 COL4A1P02462 1669 aa13.69□□□□□ -0.22
CLN3-224ENST00000566816 IRS2Q9Y4H2 1338 aa13.69□□□□□ -0.22
CLN3-224ENST00000566816 UTRNP46939 3433 aa13.69□□□□□ -0.22
CLN3-224ENST00000566816 IARSP41252 1262 aaKnown RBP13.69□□□□□ -0.22
CLN3-224ENST00000566816 KCNJ4P48050 445 aa13.69□□□□□ -0.22
CLN3-224ENST00000566816 TFCP2Q12800 502 aa13.69□□□□□ -0.22
CLN3-224ENST00000566816 HELBQ8NG08 1087 aaPredicted RBP13.69□□□□□ -0.22
CLN3-224ENST00000566816 LRRCC1Q9C099 1032 aa13.69□□□□□ -0.22
CLN3-224ENST00000566816 WWC3Q9ULE0 1092 aa13.69□□□□□ -0.22
CLN3-224ENST00000566816 EXOC6BQ9Y2D4 811 aa13.69□□□□□ -0.22
CLN3-224ENST00000566816 ZC3H4Q9UPT8 1303 aaKnown RBP13.68□□□□□ -0.22
CLN3-224ENST00000566816 IGHDP01880 384 aa13.68□□□□□ -0.22
CLN3-224ENST00000566816 SLC5A1P13866 664 aa13.68□□□□□ -0.22
CLN3-224ENST00000566816 ATP2B3Q16720 1220 aa13.68□□□□□ -0.22
CLN3-224ENST00000566816 PODNQ7Z5L7 613 aa13.68□□□□□ -0.22
CLN3-224ENST00000566816 FBXO33Q7Z6M2 555 aa13.68□□□□□ -0.22
CLN3-224ENST00000566816 CLASRPQ8N2M8 674 aaKnown RBP13.68□□□□□ -0.22
CLN3-224ENST00000566816 COA1Q9GZY4 146 aa13.68□□□□□ -0.22
CLN3-224ENST00000566816 TNNI3KQ59H18 835 aa13.67□□□□□ -0.22
CLN3-224ENST00000566816 CAVIN4Q5BKX8 364 aa13.67□□□□□ -0.22
CLN3-224ENST00000566816 JDP2Q8WYK2 163 aa13.67□□□□□ -0.22
CLN3-224ENST00000566816 ZNF512BQ96KM6 892 aaPredicted RBP13.67□□□□□ -0.22
CLN3-224ENST00000566816 FAM84BQ96KN1 310 aaPredicted RBP13.67□□□□□ -0.22
CLN3-224ENST00000566816 FPGT-TNNI3KV9GXZ4 949 aa13.67□□□□□ -0.22
CLN3-224ENST00000566816 TAF1P21675 1872 aa13.67□□□□□ -0.22
CLN3-224ENST00000566816 A0A1B0GUL7 405 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms