RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	NSFL1C	Q9UNZ2	370 aa	Known RBP	7.43	□□□□□ -1.22
CLN3-223	ENST00000566472	CNPY2	Q9Y2B0	182 aa		7.43	□□□□□ -1.22
CLN3-223	ENST00000566472	KIF3A	Q9Y496	699 aa		7.43	□□□□□ -1.22
CLN3-223	ENST00000566472	BCL9	O00512	1426 aa		7.43	□□□□□ -1.22
CLN3-223	ENST00000566472	LRP5	O75197	1615 aa		7.42	□□□□□ -1.22
CLN3-223	ENST00000566472		A0A1B0GUL7	405 aa		7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	RNF113A	O15541	343 aa	Known RBP	7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	IFIT1	P09914	478 aa	Known RBP	7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	CCDC57	Q2TAC2	916 aa		7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	CCDC158	Q5M9N0	1113 aa		7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	LARP1B	Q659C4	914 aa	Known RBP	7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	DDX46	Q7L014	1031 aa	Known RBP	7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	DNAJC10	Q8IXB1	793 aa		7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	FBXL16	Q8N461	479 aa		7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	JARID2	Q92833	1246 aa	Predicted RBP	7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	EDC3	Q96F86	508 aa	Known RBP	7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	ZNF512B	Q96KM6	892 aa	Predicted RBP	7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	AK7	Q96M32	723 aa		7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	AGXT2	Q9BYV1	514 aa		7.42	□□□□□ -1.22
CLN3-223	ENST00000566472	CIC	Q96RK0	1608 aa	Predicted RBP	7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	WNK3	Q9BYP7	1800 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	VPS37C	A5D8V6	355 aa	Predicted RBP	7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	ERVV-1	B6SEH8	477 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	GOLIM4	O00461	696 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	PFKFB2	O60825	505 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	GADD45B	O75293	160 aa	Predicted RBP	7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	CYP21A2	P08686	494 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	HMGN5	P82970	282 aa	Known RBP	7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	LRRC24	Q50LG9	513 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	DHX32	Q7L7V1	743 aa	Known RBP	7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	RGS22	Q8NE09	1264 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	SMARCC2	Q8TAQ2	1214 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	PIGB	Q92521	554 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	CHAMP1	Q96JM3	812 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	NEUROD6	Q96NK8	337 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	SCAND2P	Q9GZW5	306 aa	Predicted RBP	7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	CCDC39	Q9UFE4	941 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	CTNNA3	Q9UI47	895 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	MAST3	O60307	1309 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	WDR19	Q8NEZ3	1342 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	ATRN	O75882	1429 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	RIC1	Q4ADV7	1423 aa		7.41	□□□□□ -1.22
CLN3-223	ENST00000566472	KDM4F	A0A1W2PPD8	638 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	FIBP	O43427	364 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	CYP19A1	P11511	503 aa	Predicted RBP	7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	IL6ST	P40189	918 aa	Predicted RBP	7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	DNM1	Q05193	864 aa	Known RBP	7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	IFIT5	Q13325	482 aa	Known RBP	7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	TAF7L	Q5H9L4	462 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	TTC39A	Q5SRH9	613 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	ATL3	Q6DD88	541 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	NAA16	Q6N069	864 aa	Predicted RBP	7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	ZSCAN25	Q6NSZ9	544 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472		Q6ZUG5	572 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	NLRP10	Q86W26	655 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	NECAB1	Q8N987	351 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	APPBP2	Q92624	585 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	LARP6	Q9BRS8	491 aa	Known RBP	7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	GDPD2	Q9HCC8	539 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	BTG4	Q9NY30	223 aa		7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	NOL7	Q9UMY1	257 aa	Known RBP	7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	THRAP3	Q9Y2W1	955 aa	Known RBP	7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	COL16A1	Q07092	1604 aa	Predicted RBP	7.4	□□□□□ -1.22
CLN3-223	ENST00000566472	ANKRD36C	Q5JPF3	1778 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	ANKRD18B	A2A2Z9	1011 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	PDE8A	O60658	829 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	HSPD1	P10809	573 aa	Known RBP	7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	HSP90B1	P14625	803 aa	Known RBP	7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	MSN	P26038	577 aa	Known RBP	7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	CTSW	P56202	376 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	EVC	P57679	992 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	TIMM10	P62072	90 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	EXOSC10	Q01780	885 aa	Known RBP	7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	REST	Q13127	1097 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	TTF1	Q15361	905 aa	Predicted RBP	7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	ATP2B3	Q16720	1220 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	GORAB	Q5T7V8	394 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	CCDC129	Q6ZRS4	1044 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	STOX1	Q6ZVD7	989 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	CDC37L1	Q7L3B6	337 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	ZNF274	Q96GC6	653 aa	Predicted RBP	7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	XAGE2	Q96GT9	111 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	ZNF594	Q96JF6	807 aa	Predicted RBP	7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	FUCA2	Q9BTY2	467 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	PUS3	Q9BZE2	481 aa	Known RBP	7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	DDX19A	Q9NUU7	478 aa	Known RBP	7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	ASAP1	Q9ULH1	1129 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	TAF6L	Q9Y6J9	622 aa		7.39	□□□□□ -1.23
CLN3-223	ENST00000566472	RREB1	Q92766	1687 aa		7.38	□□□□□ -1.23
CLN3-223	ENST00000566472	RTL9	Q8NET4	1388 aa		7.38	□□□□□ -1.23
CLN3-223	ENST00000566472	SALL1	Q9NSC2	1324 aa		7.38	□□□□□ -1.23
CLN3-223	ENST00000566472		E7EWF7	191 aa		7.38	□□□□□ -1.23
CLN3-223	ENST00000566472	EXOC5	O00471	708 aa		7.38	□□□□□ -1.23
CLN3-223	ENST00000566472	ZNF500	O60304	480 aa	Predicted RBP	7.38	□□□□□ -1.23
CLN3-223	ENST00000566472	UQCRFS1P1	P0C7P4	283 aa		7.38	□□□□□ -1.23
CLN3-223	ENST00000566472	TTC6	Q86TZ1	520 aa		7.38	□□□□□ -1.23
CLN3-223	ENST00000566472	BRF1	Q92994	677 aa		7.38	□□□□□ -1.23
CLN3-223	ENST00000566472	SEC62	Q99442	399 aa	Known RBP	7.38	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms