RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 PRDM10Q9NQV6 1147 aa24.05■■□□□ 1.44
CLN3-218ENST00000565688 ANKIB1Q9P2G1 1089 aa24.05■■□□□ 1.44
CLN3-218ENST00000565688 HIRAP54198 1017 aaPredicted RBP24.04■■□□□ 1.44
CLN3-218ENST00000565688 MRS2Q9HD23 443 aa24.04■■□□□ 1.44
CLN3-218ENST00000565688 TLL2Q9Y6L7 1015 aa24.04■■□□□ 1.44
CLN3-218ENST00000565688 ANP32CO43423 234 aa24.03■■□□□ 1.44
CLN3-218ENST00000565688 UFL1O94874 794 aa24.03■■□□□ 1.44
CLN3-218ENST00000565688 DOK7Q18PE1 504 aa24.03■■□□□ 1.44
CLN3-218ENST00000565688 CDC37L1Q7L3B6 337 aa24.03■■□□□ 1.44
CLN3-218ENST00000565688 ANKRD18AQ8IVF6 992 aa24.03■■□□□ 1.44
CLN3-218ENST00000565688 TRPM4Q8TD43 1214 aa24.03■■□□□ 1.44
CLN3-218ENST00000565688 JARID2Q92833 1246 aaPredicted RBP24.03■■□□□ 1.44
CLN3-218ENST00000565688 GGA1Q9UJY5 639 aa24.03■■□□□ 1.44
CLN3-218ENST00000565688 ZBTB12Q9Y330 459 aaPredicted RBP24.03■■□□□ 1.44
CLN3-218ENST00000565688 CELF2O95319 508 aaKnown RBP24.02■■□□□ 1.44
CLN3-218ENST00000565688 IGKV5-2P06315 115 aa24.02■■□□□ 1.44
CLN3-218ENST00000565688 PAXIP1Q6ZW49 1069 aaPredicted RBP24.02■■□□□ 1.44
CLN3-218ENST00000565688 CAPNS2Q96L46 248 aa24.02■■□□□ 1.44
CLN3-218ENST00000565688 GLIS2Q9BZE0 524 aaPredicted RBP24.02■■□□□ 1.44
CLN3-218ENST00000565688 G3V3G9 751 aa24.01■■□□□ 1.43
CLN3-218ENST00000565688 CTSWP56202 376 aa24.01■■□□□ 1.43
CLN3-218ENST00000565688 DCAF8Q5TAQ9 597 aa24.01■■□□□ 1.43
CLN3-218ENST00000565688 CCDC85AQ96PX6 553 aaPredicted RBP24.01■■□□□ 1.43
CLN3-218ENST00000565688 CDC5LQ99459 802 aaKnown RBP24.01■■□□□ 1.43
CLN3-218ENST00000565688 SHTN1A0MZ66 631 aa24■■□□□ 1.43
CLN3-218ENST00000565688 SLC4A2P04920 1241 aa24■■□□□ 1.43
CLN3-218ENST00000565688 GPR101Q96P66 508 aaPredicted RBP24■■□□□ 1.43
CLN3-218ENST00000565688 XDHP47989 1333 aa24■■□□□ 1.43
CLN3-218ENST00000565688 RTL9Q8NET4 1388 aa24■■□□□ 1.43
CLN3-218ENST00000565688 CAPN15O75808 1086 aa23.99■■□□□ 1.43
CLN3-218ENST00000565688 SAPCD2Q86UD0 394 aa23.99■■□□□ 1.43
CLN3-218ENST00000565688 HHIPL1Q96JK4 782 aa23.99■■□□□ 1.43
CLN3-218ENST00000565688 KCNQ5Q9NR82 932 aa23.99■■□□□ 1.43
CLN3-218ENST00000565688 ZNF316A6NFI3 1004 aaPredicted RBP23.98■■□□□ 1.43
CLN3-218ENST00000565688 NEURL1BA8MQ27 555 aa23.98■■□□□ 1.43
CLN3-218ENST00000565688 VIL1P09327 827 aaKnown RBP23.98■■□□□ 1.43
CLN3-218ENST00000565688 CYP4F22Q6NT55 531 aa23.98■■□□□ 1.43
CLN3-218ENST00000565688 SAMD7Q7Z3H4 446 aa23.98■■□□□ 1.43
CLN3-218ENST00000565688 WDR63Q8IWG1 891 aa23.98■■□□□ 1.43
CLN3-218ENST00000565688 THSD7BQ9C0I4 1608 aa23.98■■□□□ 1.43
CLN3-218ENST00000565688 CWF19L2Q2TBE0 894 aaKnown RBP23.97■■□□□ 1.43
CLN3-218ENST00000565688 TBC1D10BQ4KMP7 808 aaPredicted RBP23.97■■□□□ 1.43
CLN3-218ENST00000565688 G2E3Q7L622 706 aa23.97■■□□□ 1.43
CLN3-218ENST00000565688 TTLL11Q8NHH1 800 aa23.97■■□□□ 1.43
CLN3-218ENST00000565688 BEGAINQ9BUH8 593 aa23.97■■□□□ 1.43
CLN3-218ENST00000565688 FANCIQ9NVI1 1328 aa23.96■■□□□ 1.43
CLN3-218ENST00000565688 ATP2B4P23634 1241 aa23.96■■□□□ 1.43
CLN3-218ENST00000565688 MAP2K2P36507 400 aa23.96■■□□□ 1.43
CLN3-218ENST00000565688 LBX1P52954 281 aa23.96■■□□□ 1.43
CLN3-218ENST00000565688 FLIIQ13045 1269 aa23.96■■□□□ 1.43
CLN3-218ENST00000565688 GRM1Q13255 1194 aa23.96■■□□□ 1.43
CLN3-218ENST00000565688 ZNF408Q9H9D4 720 aa23.96■■□□□ 1.43
CLN3-218ENST00000565688 BSDC1Q9NW68 430 aaPredicted RBP23.96■■□□□ 1.43
CLN3-218ENST00000565688 H7C1W4 665 aa23.95■■□□□ 1.42
CLN3-218ENST00000565688 USP48Q86UV5 1035 aa23.95■■□□□ 1.42
CLN3-218ENST00000565688 GREM2Q9H772 168 aa23.95■■□□□ 1.42
CLN3-218ENST00000565688 ZNF609O15014 1411 aa23.94■■□□□ 1.42
CLN3-218ENST00000565688 UBE3BQ7Z3V4 1068 aa23.94■■□□□ 1.42
CLN3-218ENST00000565688 KRT26Q7Z3Y9 468 aa23.94■■□□□ 1.42
CLN3-218ENST00000565688 DCPSQ96C86 337 aaKnown RBP23.94■■□□□ 1.42
CLN3-218ENST00000565688 MYH16Q9H6N6 1097 aa23.94■■□□□ 1.42
CLN3-218ENST00000565688 MYH3P11055 1940 aa23.93■■□□□ 1.42
CLN3-218ENST00000565688 EGFRP00533 1210 aa23.93■■□□□ 1.42
CLN3-218ENST00000565688 HSPA8P11142 646 aaKnown RBP23.93■■□□□ 1.42
CLN3-218ENST00000565688 FKBP5Q13451 457 aaPredicted RBP23.93■■□□□ 1.42
CLN3-218ENST00000565688 GCKRQ14397 625 aa23.93■■□□□ 1.42
CLN3-218ENST00000565688 KIF4BQ2VIQ3 1234 aa23.93■■□□□ 1.42
CLN3-218ENST00000565688 RBM26Q5T8P6 1007 aaKnown RBP23.93■■□□□ 1.42
CLN3-218ENST00000565688 AGBL3Q8NEM8 1001 aa23.93■■□□□ 1.42
CLN3-218ENST00000565688 SCN9AQ15858 1988 aa23.92■■□□□ 1.42
CLN3-218ENST00000565688 RSBN1LQ6PCB5 846 aaPredicted RBP23.92■■□□□ 1.42
CLN3-218ENST00000565688 PODNQ7Z5L7 613 aa23.92■■□□□ 1.42
CLN3-218ENST00000565688 DNAAF4Q8WXU2 420 aa23.92■■□□□ 1.42
CLN3-218ENST00000565688 PLA2G12BQ9BX93 195 aa23.92■■□□□ 1.42
CLN3-218ENST00000565688 MINPP1Q9UNW1 487 aa23.92■■□□□ 1.42
CLN3-218ENST00000565688 VAMP4O75379 141 aa23.91■■□□□ 1.42
CLN3-218ENST00000565688 LINS1Q8NG48 757 aa23.91■■□□□ 1.42
CLN3-218ENST00000565688 CACNA1FO60840 1977 aa23.91■■□□□ 1.42
CLN3-218ENST00000565688 MED23Q9ULK4 1368 aa23.91■■□□□ 1.42
CLN3-218ENST00000565688 IGHMBP2P38935 993 aaKnown RBP23.9■■□□□ 1.42
CLN3-218ENST00000565688 ZNF280AP59817 542 aaPredicted RBP23.9■■□□□ 1.42
CLN3-218ENST00000565688 SALL2Q9Y467 1007 aaPredicted RBP23.9■■□□□ 1.42
CLN3-218ENST00000565688 USP17L3A6NCW0 530 aa23.89■■□□□ 1.41
CLN3-218ENST00000565688 USP17L4A6NCW7 530 aa23.89■■□□□ 1.41
CLN3-218ENST00000565688 AOC2O75106 756 aa23.89■■□□□ 1.41
CLN3-218ENST00000565688 USP17L1Q7RTZ2 530 aa23.89■■□□□ 1.41
CLN3-218ENST00000565688 CA12O43570 354 aa23.88■■□□□ 1.41
CLN3-218ENST00000565688 CCT4P50991 539 aaKnown RBP23.88■■□□□ 1.41
CLN3-218ENST00000565688 HUNKP57058 714 aa23.88■■□□□ 1.41
CLN3-218ENST00000565688 EXOSC9Q06265 439 aaKnown RBP23.88■■□□□ 1.41
CLN3-218ENST00000565688 SULF1Q8IWU6 871 aa23.88■■□□□ 1.41
CLN3-218ENST00000565688 PSME4Q14997 1843 aa23.87■■□□□ 1.41
CLN3-218ENST00000565688 USP17L8P0C7I0 530 aa23.87■■□□□ 1.41
CLN3-218ENST00000565688 BRPF1P55201 1214 aaPredicted RBP23.87■■□□□ 1.41
CLN3-218ENST00000565688 CASP7P55210 303 aa23.87■■□□□ 1.41
CLN3-218ENST00000565688 C2orf69Q8N8R5 385 aa23.87■■□□□ 1.41
CLN3-218ENST00000565688 GMLQ99445 158 aa23.87■■□□□ 1.41
CLN3-218ENST00000565688 GGA3Q9NZ52 723 aa23.87■■□□□ 1.41
CLN3-218ENST00000565688 LEMD3Q9Y2U8 911 aa23.87■■□□□ 1.41
CLN3-218ENST00000565688 ADM5C9JUS6 153 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms