RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, human

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-215	ENST00000565236		H7C1W4	665 aa		28.69	■■■□□ 2.18
CLN3-215	ENST00000565236	UFL1	O94874	794 aa		28.69	■■■□□ 2.18
CLN3-215	ENST00000565236	GPR101	Q96P66	508 aa	Predicted RBP	28.69	■■■□□ 2.18
CLN3-215	ENST00000565236	CNOT7	Q9UIV1	285 aa	Known RBP	28.69	■■■□□ 2.18
CLN3-215	ENST00000565236		G3V3G9	751 aa		28.68	■■■□□ 2.18
CLN3-215	ENST00000565236	ECE2	O60344	883 aa		28.68	■■■□□ 2.18
CLN3-215	ENST00000565236	GCKR	Q14397	625 aa		28.68	■■■□□ 2.18
CLN3-215	ENST00000565236	DCAF8	Q5TAQ9	597 aa		28.68	■■■□□ 2.18
CLN3-215	ENST00000565236		H7C1D1	291 aa		28.67	■■■□□ 2.18
CLN3-215	ENST00000565236	PSMD14	O00487	310 aa		28.67	■■■□□ 2.18
CLN3-215	ENST00000565236	LINS1	Q8NG48	757 aa		28.67	■■■□□ 2.18
CLN3-215	ENST00000565236	CNTNAP1	P78357	1384 aa		28.66	■■■□□ 2.18
CLN3-215	ENST00000565236	IFFO2	Q5TF58	517 aa		28.66	■■■□□ 2.18
CLN3-215	ENST00000565236	GREM2	Q9H772	168 aa		28.66	■■■□□ 2.18
CLN3-215	ENST00000565236	ZBTB12	Q9Y330	459 aa	Predicted RBP	28.66	■■■□□ 2.18
CLN3-215	ENST00000565236	DPF2	Q92785	391 aa		28.65	■■■□□ 2.18
CLN3-215	ENST00000565236	XDH	P47989	1333 aa		28.65	■■■□□ 2.18
CLN3-215	ENST00000565236	MICALL2	Q8IY33	904 aa		28.64	■■■□□ 2.18
CLN3-215	ENST00000565236	KCNQ5	Q9NR82	932 aa		28.64	■■■□□ 2.18
CLN3-215	ENST00000565236	MYH3	P11055	1940 aa		28.64	■■■□□ 2.18
CLN3-215	ENST00000565236	HSPA1A	P0DMV8	641 aa	Known RBP	28.63	■■■□□ 2.17
CLN3-215	ENST00000565236	HSPA1B	P0DMV9	641 aa	Known RBP	28.63	■■■□□ 2.17
CLN3-215	ENST00000565236	BSDC1	Q9NW68	430 aa	Predicted RBP	28.63	■■■□□ 2.17
CLN3-215	ENST00000565236	RTL9	Q8NET4	1388 aa		28.62	■■■□□ 2.17
CLN3-215	ENST00000565236	ATP2B4	P23634	1241 aa		28.62	■■■□□ 2.17
CLN3-215	ENST00000565236	FMR1	Q06787	632 aa	Known RBP eCLIP	28.62	■■■□□ 2.17
CLN3-215	ENST00000565236	ZC3H15	Q8WU90	426 aa	Known RBP	28.62	■■■□□ 2.17
CLN3-215	ENST00000565236	PLA2G12B	Q9BX93	195 aa		28.62	■■■□□ 2.17
CLN3-215	ENST00000565236	ABT1	Q9ULW3	272 aa	Known RBP	28.62	■■■□□ 2.17
CLN3-215	ENST00000565236	SHTN1	A0MZ66	631 aa		28.61	■■■□□ 2.17
CLN3-215	ENST00000565236		F6X3S4	739 aa		28.61	■■■□□ 2.17
CLN3-215	ENST00000565236	TRAF5	O00463	557 aa		28.61	■■■□□ 2.17
CLN3-215	ENST00000565236	RPS12	P25398	132 aa	Known RBP	28.61	■■■□□ 2.17
CLN3-215	ENST00000565236	VEGFB	P49765	207 aa		28.61	■■■□□ 2.17
CLN3-215	ENST00000565236	HIRA	P54198	1017 aa	Predicted RBP	28.61	■■■□□ 2.17
CLN3-215	ENST00000565236	DEFB115	Q30KQ5	88 aa		28.61	■■■□□ 2.17
CLN3-215	ENST00000565236	PGAP2	Q9UHJ9	254 aa		28.61	■■■□□ 2.17
CLN3-215	ENST00000565236	MINPP1	Q9UNW1	487 aa		28.61	■■■□□ 2.17
CLN3-215	ENST00000565236	TRPM4	Q8TD43	1214 aa		28.6	■■■□□ 2.17
CLN3-215	ENST00000565236	RASSF10	A6NK89	507 aa		28.59	■■■□□ 2.17
CLN3-215	ENST00000565236	IGHMBP2	P38935	993 aa	Known RBP	28.59	■■■□□ 2.17
CLN3-215	ENST00000565236	CASP7	P55210	303 aa		28.59	■■■□□ 2.17
CLN3-215	ENST00000565236	ZNF521	Q96K83	1311 aa		28.58	■■■□□ 2.17
CLN3-215	ENST00000565236	CSF1R	P07333	972 aa		28.57	■■■□□ 2.16
CLN3-215	ENST00000565236	VIL1	P09327	827 aa	Known RBP	28.57	■■■□□ 2.16
CLN3-215	ENST00000565236	ITGA6	P23229	1130 aa		28.57	■■■□□ 2.16
CLN3-215	ENST00000565236	BEND3	Q5T5X7	828 aa		28.57	■■■□□ 2.16
CLN3-215	ENST00000565236	SAMD7	Q7Z3H4	446 aa		28.57	■■■□□ 2.16
CLN3-215	ENST00000565236	GLIS2	Q9BZE0	524 aa	Predicted RBP	28.57	■■■□□ 2.16
CLN3-215	ENST00000565236	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	28.56	■■■□□ 2.16
CLN3-215	ENST00000565236	CST9	Q5W186	159 aa		28.56	■■■□□ 2.16
CLN3-215	ENST00000565236	CCT4	P50991	539 aa	Known RBP	28.55	■■■□□ 2.16
CLN3-215	ENST00000565236	FAM161A	Q3B820	660 aa		28.55	■■■□□ 2.16
CLN3-215	ENST00000565236	COL13A1	Q5TAT6	717 aa	Predicted RBP	28.55	■■■□□ 2.16
CLN3-215	ENST00000565236	CDC37L1	Q7L3B6	337 aa		28.55	■■■□□ 2.16
CLN3-215	ENST00000565236	MPHOSPH8	Q99549	860 aa		28.55	■■■□□ 2.16
CLN3-215	ENST00000565236	TRPM7	Q96QT4	1865 aa		28.55	■■■□□ 2.16
CLN3-215	ENST00000565236	WTIP	A6NIX2	430 aa	Predicted RBP	28.54	■■■□□ 2.16
CLN3-215	ENST00000565236	RBM26	Q5T8P6	1007 aa	Known RBP	28.54	■■■□□ 2.16
CLN3-215	ENST00000565236	PODN	Q7Z5L7	613 aa		28.54	■■■□□ 2.16
CLN3-215	ENST00000565236	SPEF2	Q9C093	1822 aa		28.54	■■■□□ 2.16
CLN3-215	ENST00000565236	SCN9A	Q15858	1988 aa		28.53	■■■□□ 2.16
CLN3-215	ENST00000565236	ANKRD18B	A2A2Z9	1011 aa		28.52	■■■□□ 2.16
CLN3-215	ENST00000565236	CELF2	O95319	508 aa	Known RBP	28.52	■■■□□ 2.16
CLN3-215	ENST00000565236	SLC4A10	Q6U841	1118 aa		28.52	■■■□□ 2.16
CLN3-215	ENST00000565236	ANKRD2	Q9GZV1	360 aa		28.52	■■■□□ 2.16
CLN3-215	ENST00000565236	LEMD3	Q9Y2U8	911 aa		28.52	■■■□□ 2.16
CLN3-215	ENST00000565236	WDR33	Q9C0J8	1336 aa	Known RBP	28.51	■■■□□ 2.15
CLN3-215	ENST00000565236		E9PSI1	815 aa		28.51	■■■□□ 2.15
CLN3-215	ENST00000565236	RSBN1L	Q6PCB5	846 aa	Predicted RBP	28.51	■■■□□ 2.15
CLN3-215	ENST00000565236	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	28.51	■■■□□ 2.15
CLN3-215	ENST00000565236	AGBL3	Q8NEM8	1001 aa		28.51	■■■□□ 2.15
CLN3-215	ENST00000565236	MED23	Q9ULK4	1368 aa		28.5	■■■□□ 2.15
CLN3-215	ENST00000565236	USP17L3	A6NCW0	530 aa		28.5	■■■□□ 2.15
CLN3-215	ENST00000565236	USP17L4	A6NCW7	530 aa		28.5	■■■□□ 2.15
CLN3-215	ENST00000565236	EGFR	P00533	1210 aa		28.5	■■■□□ 2.15
CLN3-215	ENST00000565236	FOXO4	P98177	505 aa		28.5	■■■□□ 2.15
CLN3-215	ENST00000565236	USP17L1	Q7RTZ2	530 aa		28.5	■■■□□ 2.15
CLN3-215	ENST00000565236	USP48	Q86UV5	1035 aa		28.5	■■■□□ 2.15
CLN3-215	ENST00000565236	C9orf78	Q9NZ63	289 aa	Predicted RBP	28.5	■■■□□ 2.15
CLN3-215	ENST00000565236	CHMP3	Q9Y3E7	222 aa		28.5	■■■□□ 2.15
CLN3-215	ENST00000565236	TLL2	Q9Y6L7	1015 aa		28.5	■■■□□ 2.15
CLN3-215	ENST00000565236	GRM8	O00222	908 aa		28.49	■■■□□ 2.15
CLN3-215	ENST00000565236	IFIT5	Q13325	482 aa	Known RBP	28.49	■■■□□ 2.15
CLN3-215	ENST00000565236	AIDA	Q96BJ3	306 aa		28.49	■■■□□ 2.15
CLN3-215	ENST00000565236	DCPS	Q96C86	337 aa	Known RBP	28.49	■■■□□ 2.15
CLN3-215	ENST00000565236	SRCIN1	Q9C0H9	1055 aa		28.49	■■■□□ 2.15
CLN3-215	ENST00000565236	ZNF408	Q9H9D4	720 aa		28.49	■■■□□ 2.15
CLN3-215	ENST00000565236	ALDH1L1	O75891	902 aa		28.48	■■■□□ 2.15
CLN3-215	ENST00000565236	ECE1	P42892	770 aa		28.48	■■■□□ 2.15
CLN3-215	ENST00000565236	KIF4B	Q2VIQ3	1234 aa		28.48	■■■□□ 2.15
CLN3-215	ENST00000565236	ZNF804B	A4D1E1	1349 aa		28.47	■■■□□ 2.15
CLN3-215	ENST00000565236	KRT26	Q7Z3Y9	468 aa		28.47	■■■□□ 2.15
CLN3-215	ENST00000565236	CAPNS2	Q96L46	248 aa		28.47	■■■□□ 2.15
CLN3-215	ENST00000565236	KCNJ4	P48050	445 aa		28.46	■■■□□ 2.15
CLN3-215	ENST00000565236	CHRND	Q07001	517 aa		28.46	■■■□□ 2.15
CLN3-215	ENST00000565236	GRM1	Q13255	1194 aa		28.46	■■■□□ 2.15
CLN3-215	ENST00000565236	LMBR1L	Q6UX01	489 aa		28.46	■■■□□ 2.15
CLN3-215	ENST00000565236	COA1	Q9GZY4	146 aa		28.46	■■■□□ 2.15
CLN3-215	ENST00000565236	FOXN1	O15353	648 aa		28.45	■■■□□ 2.14

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms