RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 WTIPA6NIX2 430 aaPredicted RBP19■□□□□ 0.63
CLN3-213ENST00000565047 C6orf229H3BNL8 230 aa19■□□□□ 0.63
CLN3-213ENST00000565047 RIMBP2O15034 1052 aa19■□□□□ 0.63
CLN3-213ENST00000565047 HIRAP54198 1017 aaPredicted RBP19■□□□□ 0.63
CLN3-213ENST00000565047 TNIP1Q15025 636 aa19■□□□□ 0.63
CLN3-213ENST00000565047 ANKRD18AQ8IVF6 992 aa19■□□□□ 0.63
CLN3-213ENST00000565047 DBNDD1Q9H9R9 158 aa19■□□□□ 0.63
CLN3-213ENST00000565047 SHTN1A0MZ66 631 aa18.99■□□□□ 0.63
CLN3-213ENST00000565047 EYA3Q99504 573 aa18.99■□□□□ 0.63
CLN3-213ENST00000565047 BSDC1Q9NW68 430 aaPredicted RBP18.99■□□□□ 0.63
CLN3-213ENST00000565047 MINPP1Q9UNW1 487 aa18.99■□□□□ 0.63
CLN3-213ENST00000565047 MYH3P11055 1940 aa18.99■□□□□ 0.63
CLN3-213ENST00000565047 PSMD14O00487 310 aa18.98■□□□□ 0.63
CLN3-213ENST00000565047 DOK7Q18PE1 504 aa18.98■□□□□ 0.63
CLN3-213ENST00000565047 DPF2Q92785 391 aa18.98■□□□□ 0.63
CLN3-213ENST00000565047 CDC5LQ99459 802 aaKnown RBP18.98■□□□□ 0.63
CLN3-213ENST00000565047 GGA1Q9UJY5 639 aa18.98■□□□□ 0.63
CLN3-213ENST00000565047 ZBTB12Q9Y330 459 aaPredicted RBP18.98■□□□□ 0.63
CLN3-213ENST00000565047 XDHP47989 1333 aa18.98■□□□□ 0.63
CLN3-213ENST00000565047 TMEM88BA6NKF7 163 aa18.97■□□□□ 0.63
CLN3-213ENST00000565047 ECE2O60344 883 aa18.97■□□□□ 0.63
CLN3-213ENST00000565047 UFL1O94874 794 aa18.97■□□□□ 0.63
CLN3-213ENST00000565047 FOXO4P98177 505 aa18.97■□□□□ 0.63
CLN3-213ENST00000565047 FMR1Q06787 632 aaKnown RBP eCLIP18.97■□□□□ 0.63
CLN3-213ENST00000565047 SLFN5Q08AF3 891 aa18.97■□□□□ 0.63
CLN3-213ENST00000565047 TRMT2AQ8IZ69 625 aaKnown RBP18.97■□□□□ 0.63
CLN3-213ENST00000565047 ZC3H12CQ9C0D7 883 aaKnown RBP18.97■□□□□ 0.63
CLN3-213ENST00000565047 ANKIB1Q9P2G1 1089 aa18.97■□□□□ 0.63
CLN3-213ENST00000565047 SCN9AQ15858 1988 aa18.97■□□□□ 0.63
CLN3-213ENST00000565047 E9PSI1 815 aa18.96■□□□□ 0.63
CLN3-213ENST00000565047 CCER2I3L3R5 266 aa18.96■□□□□ 0.63
CLN3-213ENST00000565047 VIL1P09327 827 aaKnown RBP18.96■□□□□ 0.63
CLN3-213ENST00000565047 TRPM4Q8TD43 1214 aa18.96■□□□□ 0.63
CLN3-213ENST00000565047 CNOT7Q9UIV1 285 aaKnown RBP18.96■□□□□ 0.63
CLN3-213ENST00000565047 CNTNAP1P78357 1384 aa18.95■□□□□ 0.62
CLN3-213ENST00000565047 ITGA6P23229 1130 aa18.95■□□□□ 0.62
CLN3-213ENST00000565047 ATP2B4P23634 1241 aa18.95■□□□□ 0.62
CLN3-213ENST00000565047 MRPL50Q8N5N7 158 aaKnown RBP18.95■□□□□ 0.62
CLN3-213ENST00000565047 ZNF609O15014 1411 aa18.94■□□□□ 0.62
CLN3-213ENST00000565047 FAM161AQ3B820 660 aa18.94■□□□□ 0.62
CLN3-213ENST00000565047 CST9Q5W186 159 aa18.94■□□□□ 0.62
CLN3-213ENST00000565047 MICALL2Q8IY33 904 aa18.94■□□□□ 0.62
CLN3-213ENST00000565047 ZC3H15Q8WU90 426 aaKnown RBP18.94■□□□□ 0.62
CLN3-213ENST00000565047 CDCA7LQ96GN5 454 aa18.94■□□□□ 0.62
CLN3-213ENST00000565047 BCL2L13Q9BXK5 485 aa18.94■□□□□ 0.62
CLN3-213ENST00000565047 MKRN1Q9UHC7 482 aaKnown RBP18.94■□□□□ 0.62
CLN3-213ENST00000565047 TRAF5O00463 557 aa18.93■□□□□ 0.62
CLN3-213ENST00000565047 EGFRP00533 1210 aa18.93■□□□□ 0.62
CLN3-213ENST00000565047 RPS12P25398 132 aaKnown RBP18.93■□□□□ 0.62
CLN3-213ENST00000565047 EPHA10Q5JZY3 1008 aa18.93■□□□□ 0.62
CLN3-213ENST00000565047 RASSF10A6NK89 507 aa18.92■□□□□ 0.62
CLN3-213ENST00000565047 GRM8O00222 908 aa18.92■□□□□ 0.62
CLN3-213ENST00000565047 CCT4P50991 539 aaKnown RBP18.92■□□□□ 0.62
CLN3-213ENST00000565047 KAZALD1Q96I82 304 aa18.92■□□□□ 0.62
CLN3-213ENST00000565047 GMLQ99445 158 aa18.92■□□□□ 0.62
CLN3-213ENST00000565047 MED23Q9ULK4 1368 aa18.92■□□□□ 0.62
CLN3-213ENST00000565047 SPEF2Q9C093 1822 aa18.91■□□□□ 0.62
CLN3-213ENST00000565047 ALDH1L1O75891 902 aa18.91■□□□□ 0.62
CLN3-213ENST00000565047 SAMD7Q7Z3H4 446 aa18.91■□□□□ 0.62
CLN3-213ENST00000565047 TXNRD3Q86VQ6 643 aa18.91■□□□□ 0.62
CLN3-213ENST00000565047 SSH1Q8WYL5 1049 aa18.91■□□□□ 0.62
CLN3-213ENST00000565047 IRS2Q9Y4H2 1338 aa18.91■□□□□ 0.62
CLN3-213ENST00000565047 H7C1D1 291 aa18.9■□□□□ 0.62
CLN3-213ENST00000565047 IGHMBP2P38935 993 aaKnown RBP18.9■□□□□ 0.62
CLN3-213ENST00000565047 VEGFBP49765 207 aa18.9■□□□□ 0.62
CLN3-213ENST00000565047 PODNQ7Z5L7 613 aa18.9■□□□□ 0.62
CLN3-213ENST00000565047 LEMD3Q9Y2U8 911 aa18.9■□□□□ 0.62
CLN3-213ENST00000565047 UTYO14607 1347 aa18.9■□□□□ 0.62
CLN3-213ENST00000565047 PSME4Q14997 1843 aa18.9■□□□□ 0.62
CLN3-213ENST00000565047 ZNF646O15015 1829 aaPredicted RBP18.89■□□□□ 0.61
CLN3-213ENST00000565047 GLIS2Q9BZE0 524 aaPredicted RBP18.89■□□□□ 0.61
CLN3-213ENST00000565047 SRCIN1Q9C0H9 1055 aa18.89■□□□□ 0.61
CLN3-213ENST00000565047 KLRK1P26718 216 aa18.88■□□□□ 0.61
CLN3-213ENST00000565047 ZNF280AP59817 542 aaPredicted RBP18.88■□□□□ 0.61
CLN3-213ENST00000565047 RSBN1LQ6PCB5 846 aaPredicted RBP18.88■□□□□ 0.61
CLN3-213ENST00000565047 LMBR1LQ6UX01 489 aa18.88■□□□□ 0.61
CLN3-213ENST00000565047 ANKRD18BA2A2Z9 1011 aa18.87■□□□□ 0.61
CLN3-213ENST00000565047 ZNF804BA4D1E1 1349 aa18.87■□□□□ 0.61
CLN3-213ENST00000565047 NBPF7P0C2Y1 421 aaPredicted RBP18.87■□□□□ 0.61
CLN3-213ENST00000565047 HSPA1AP0DMV8 641 aaKnown RBP18.87■□□□□ 0.61
CLN3-213ENST00000565047 HSPA1BP0DMV9 641 aaKnown RBP18.87■□□□□ 0.61
CLN3-213ENST00000565047 CHRNDQ07001 517 aa18.87■□□□□ 0.61
CLN3-213ENST00000565047 DEFB115Q30KQ5 88 aa18.87■□□□□ 0.61
CLN3-213ENST00000565047 TBC1D10BQ4KMP7 808 aaPredicted RBP18.87■□□□□ 0.61
CLN3-213ENST00000565047 SLC4A10Q6U841 1118 aa18.87■□□□□ 0.61
CLN3-213ENST00000565047 AGBL3Q8NEM8 1001 aa18.87■□□□□ 0.61
CLN3-213ENST00000565047 ANKRD2Q9GZV1 360 aa18.87■□□□□ 0.61
CLN3-213ENST00000565047 TRPM7Q96QT4 1865 aa18.86■□□□□ 0.61
CLN3-213ENST00000565047 PTPRCP08575 1304 aa18.86■□□□□ 0.61
CLN3-213ENST00000565047 IFIT5Q13325 482 aaKnown RBP18.86■□□□□ 0.61
CLN3-213ENST00000565047 DLK2Q6UY11 383 aa18.86■□□□□ 0.61
CLN3-213ENST00000565047 CDC37L1Q7L3B6 337 aa18.86■□□□□ 0.61
CLN3-213ENST00000565047 SUCLG2Q96I99 432 aa18.86■□□□□ 0.61
CLN3-213ENST00000565047 MPHOSPH8Q99549 860 aa18.86■□□□□ 0.61
CLN3-213ENST00000565047 TLL2Q9Y6L7 1015 aa18.86■□□□□ 0.61
CLN3-213ENST00000565047 USP17L3A6NCW0 530 aa18.85■□□□□ 0.61
CLN3-213ENST00000565047 USP17L4A6NCW7 530 aa18.85■□□□□ 0.61
CLN3-213ENST00000565047 SNAP23O00161 211 aa18.85■□□□□ 0.61
CLN3-213ENST00000565047 ALDH1L2Q3SY69 923 aa18.85■□□□□ 0.61
CLN3-213ENST00000565047 DACT2Q5SW24 774 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms