RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 ZNF541Q9H0D2 1346 aa13.74□□□□□ -0.21
SF3B3-205ENST00000564899 NPHP1O15259 732 aa13.74□□□□□ -0.21
SF3B3-205ENST00000564899 HCLS1P14317 486 aaPredicted RBP13.74□□□□□ -0.21
SF3B3-205ENST00000564899 LBX1P52954 281 aa13.74□□□□□ -0.21
SF3B3-205ENST00000564899 TPTE2Q6XPS3 522 aa13.74□□□□□ -0.21
SF3B3-205ENST00000564899 TAOK3Q9H2K8 898 aa13.74□□□□□ -0.21
SF3B3-205ENST00000564899 EXOC6BQ9Y2D4 811 aa13.74□□□□□ -0.21
SF3B3-205ENST00000564899 ABCC12Q96J65 1359 aa13.73□□□□□ -0.21
SF3B3-205ENST00000564899 LTBP3Q9NS15 1303 aa13.73□□□□□ -0.21
SF3B3-205ENST00000564899 SURF6O75683 361 aaKnown RBP13.73□□□□□ -0.21
SF3B3-205ENST00000564899 ITGBL1O95965 494 aaPredicted RBP13.73□□□□□ -0.21
SF3B3-205ENST00000564899 FAM161AQ3B820 660 aa13.73□□□□□ -0.21
SF3B3-205ENST00000564899 PRPF40BQ6NWY9 871 aaKnown RBP13.73□□□□□ -0.21
SF3B3-205ENST00000564899 CNBD1Q8NA66 436 aa13.73□□□□□ -0.21
SF3B3-205ENST00000564899 BRIP1Q9BX63 1249 aa13.73□□□□□ -0.21
SF3B3-205ENST00000564899 TAF1DQ9H5J8 278 aaPredicted RBP13.73□□□□□ -0.21
SF3B3-205ENST00000564899 PRDM10Q9NQV6 1147 aa13.73□□□□□ -0.21
SF3B3-205ENST00000564899 PDZRN3Q9UPQ7 1066 aa13.73□□□□□ -0.21
SF3B3-205ENST00000564899 APBB1O00213 710 aa13.72□□□□□ -0.21
SF3B3-205ENST00000564899 CSF1RP07333 972 aa13.72□□□□□ -0.21
SF3B3-205ENST00000564899 RFX5P48382 616 aaPredicted RBP13.72□□□□□ -0.21
SF3B3-205ENST00000564899 ANKRD45Q5TZF3 282 aa13.72□□□□□ -0.21
SF3B3-205ENST00000564899 SLC51AQ86UW1 340 aa13.72□□□□□ -0.21
SF3B3-205ENST00000564899 TTLL11Q8NHH1 800 aa13.72□□□□□ -0.21
SF3B3-205ENST00000564899 CCDC85AQ96PX6 553 aaPredicted RBP13.72□□□□□ -0.21
SF3B3-205ENST00000564899 WBP1LQ9NX94 342 aa13.72□□□□□ -0.21
SF3B3-205ENST00000564899 PA2G4Q9UQ80 394 aaKnown RBP13.72□□□□□ -0.21
SF3B3-205ENST00000564899 SRGNP10124 158 aa13.71□□□□□ -0.21
SF3B3-205ENST00000564899 ST5P78524 1137 aa13.71□□□□□ -0.21
SF3B3-205ENST00000564899 NUCB1Q02818 461 aa13.71□□□□□ -0.21
SF3B3-205ENST00000564899 FMR1Q06787 632 aaKnown RBP eCLIP13.71□□□□□ -0.212e-9■■□□□ 13.4
SF3B3-205ENST00000564899 OS9Q13438 667 aaPredicted RBP13.71□□□□□ -0.21
SF3B3-205ENST00000564899 CCDC57Q2TAC2 916 aa13.71□□□□□ -0.21
SF3B3-205ENST00000564899 HSP90AB4PQ58FF6 505 aa13.71□□□□□ -0.21
SF3B3-205ENST00000564899 SLC10A5Q5PT55 438 aa13.71□□□□□ -0.21
SF3B3-205ENST00000564899 C7orf43Q8WVR3 580 aa13.71□□□□□ -0.21
SF3B3-205ENST00000564899 GREM2Q9H772 168 aa13.71□□□□□ -0.21
SF3B3-205ENST00000564899 ZBTB47Q9UFB7 747 aaPredicted RBP13.71□□□□□ -0.21
SF3B3-205ENST00000564899 NOP58Q9Y2X3 529 aaKnown RBP13.71□□□□□ -0.21
SF3B3-205ENST00000564899 TNRC18O15417 2968 aaPredicted RBP13.71□□□□□ -0.22
SF3B3-205ENST00000564899 COL4A5P29400 1685 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 SCN4AP35499 1836 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 RAB11FIP3O75154 756 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 HSPA8P11142 646 aaKnown RBP13.7□□□□□ -0.22
SF3B3-205ENST00000564899 PDE6BP35913 854 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 CTCFP49711 727 aaPredicted RBP13.7□□□□□ -0.22
SF3B3-205ENST00000564899 PTPN12Q05209 780 aaKnown RBP13.7□□□□□ -0.22
SF3B3-205ENST00000564899 IFIT5Q13325 482 aaKnown RBP13.7□□□□□ -0.22
SF3B3-205ENST00000564899 CCDC152Q4G0S7 254 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 EAPPQ56P03 285 aaPredicted RBP13.7□□□□□ -0.22
SF3B3-205ENST00000564899 TAF7LQ5H9L4 462 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 CHD1LQ86WJ1 897 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 LDHDQ86WU2 507 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 KLHDC4Q8TBB5 520 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 ABHD8Q96I13 439 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 L3MBTL3Q96JM7 780 aaPredicted RBP13.7□□□□□ -0.22
SF3B3-205ENST00000564899 SIL1Q9H173 461 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 COPRSQ9NQ92 184 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 LAMB2P55268 1798 aa13.7□□□□□ -0.22
SF3B3-205ENST00000564899 ANKRD18BA2A2Z9 1011 aa13.69□□□□□ -0.22
SF3B3-205ENST00000564899 TMEM88BA6NKF7 163 aa13.69□□□□□ -0.22
SF3B3-205ENST00000564899 ITGA6P23229 1130 aa13.69□□□□□ -0.22
SF3B3-205ENST00000564899 G3BP1Q13283 466 aaKnown RBP eCLIP13.69□□□□□ -0.22
SF3B3-205ENST00000564899 MAP1SQ66K74 1059 aaPredicted RBP13.69□□□□□ -0.22
SF3B3-205ENST00000564899 SKAP1Q86WV1 359 aa13.69□□□□□ -0.22
SF3B3-205ENST00000564899 ERC1Q8IUD2 1116 aa13.69□□□□□ -0.22
SF3B3-205ENST00000564899 NLRP3Q96P20 1036 aa13.69□□□□□ -0.22
SF3B3-205ENST00000564899 LRRCC1Q9C099 1032 aa13.69□□□□□ -0.22
SF3B3-205ENST00000564899 LNPKQ9C0E8 428 aa13.69□□□□□ -0.22
SF3B3-205ENST00000564899 ZNF277Q9NRM2 450 aaPredicted RBP13.69□□□□□ -0.22
SF3B3-205ENST00000564899 RIC1Q4ADV7 1423 aa13.69□□□□□ -0.22
SF3B3-205ENST00000564899 LTBP1Q14766 1721 aa13.69□□□□□ -0.22
SF3B3-205ENST00000564899 DDX60Q8IY21 1712 aaKnown RBP13.69□□□□□ -0.22
SF3B3-205ENST00000564899 SMARCA5O60264 1052 aaPredicted RBP13.68□□□□□ -0.22
SF3B3-205ENST00000564899 SF3B3Q15393 1217 aaKnown RBP13.68□□□□□ -0.22
SF3B3-205ENST00000564899 C3orf67Q6ZVT6 689 aa13.68□□□□□ -0.22
SF3B3-205ENST00000564899 KIF1BPQ96EK5 621 aa13.68□□□□□ -0.22
SF3B3-205ENST00000564899 ZNF594Q96JF6 807 aaPredicted RBP13.68□□□□□ -0.22
SF3B3-205ENST00000564899 RTL9Q8NET4 1388 aa13.68□□□□□ -0.22
SF3B3-205ENST00000564899 RGS3P49796 1198 aa13.67□□□□□ -0.22
SF3B3-205ENST00000564899 STYK1Q6J9G0 422 aa13.67□□□□□ -0.22
SF3B3-205ENST00000564899 RHPN1Q8TCX5 695 aa13.67□□□□□ -0.22
SF3B3-205ENST00000564899 AIDAQ96BJ3 306 aa13.67□□□□□ -0.22
SF3B3-205ENST00000564899 BCL11AQ9H165 835 aa13.67□□□□□ -0.22
SF3B3-205ENST00000564899 EYA2O00167 538 aa13.66□□□□□ -0.22
SF3B3-205ENST00000564899 CIAO1O76071 339 aa13.66□□□□□ -0.22
SF3B3-205ENST00000564899 PDE4AP27815 886 aa13.66□□□□□ -0.22
SF3B3-205ENST00000564899 CNKSR1Q969H4 720 aa13.66□□□□□ -0.22
SF3B3-205ENST00000564899 IL1RAPL2Q9NP60 686 aa13.66□□□□□ -0.22
SF3B3-205ENST00000564899 SEC31BQ9NQW1 1179 aa13.66□□□□□ -0.22
SF3B3-205ENST00000564899 FBXO3Q9UK99 471 aa13.66□□□□□ -0.22
SF3B3-205ENST00000564899 SNED1Q8TER0 1413 aa13.65□□□□□ -0.22
SF3B3-205ENST00000564899 THSD7BQ9C0I4 1608 aa13.65□□□□□ -0.22
SF3B3-205ENST00000564899 MYH3P11055 1940 aa13.65□□□□□ -0.22
SF3B3-205ENST00000564899 IQCA1LA6NCM1 817 aa13.65□□□□□ -0.22
SF3B3-205ENST00000564899 RASSF10A6NK89 507 aa13.65□□□□□ -0.22
SF3B3-205ENST00000564899 EPHX2P34913 555 aa13.65□□□□□ -0.22
SF3B3-205ENST00000564899 IL15P40933 162 aaPredicted RBP13.65□□□□□ -0.22
SF3B3-205ENST00000564899 MASTLQ96GX5 879 aa13.65□□□□□ -0.22
SF3B3-205ENST00000564899 CDC5LQ99459 802 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms