RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PDIA6Q15084 440 aa9.63□□□□□ -0.87
VPS4A-203ENST00000564399 XAGE3Q8WTP9 111 aa9.63□□□□□ -0.87
VPS4A-203ENST00000564399 ZNF296Q8WUU4 475 aaPredicted RBP9.63□□□□□ -0.87
VPS4A-203ENST00000564399 NECTIN2Q92692 538 aa9.63□□□□□ -0.87
VPS4A-203ENST00000564399 POLLQ9UGP5 575 aa9.63□□□□□ -0.87
VPS4A-203ENST00000564399 RTL9Q8NET4 1388 aa9.63□□□□□ -0.87
VPS4A-203ENST00000564399 LRRC37AA6NMS7 1700 aa9.62□□□□□ -0.87
VPS4A-203ENST00000564399 FKBP1BP68106 108 aa9.62□□□□□ -0.87
VPS4A-203ENST00000564399 SCARF1Q14162 830 aa9.62□□□□□ -0.87
VPS4A-203ENST00000564399 NFE2L2Q16236 605 aa9.62□□□□□ -0.87
VPS4A-203ENST00000564399 ANGEL2Q5VTE6 544 aaKnown RBP9.62□□□□□ -0.87
VPS4A-203ENST00000564399 PPP4R3CPQ6ZMV5 832 aa9.62□□□□□ -0.87
VPS4A-203ENST00000564399 LRP10Q7Z4F1 713 aa9.62□□□□□ -0.87
VPS4A-203ENST00000564399 CELF1Q92879 486 aaKnown RBP9.62□□□□□ -0.87
VPS4A-203ENST00000564399 ZC3H12CQ9C0D7 883 aaKnown RBP9.62□□□□□ -0.87
VPS4A-203ENST00000564399 DDX60Q8IY21 1712 aaKnown RBP9.62□□□□□ -0.87
VPS4A-203ENST00000564399 MAPK8IP3Q9UPT6 1336 aa9.61□□□□□ -0.87
VPS4A-203ENST00000564399 VIL1P09327 827 aaKnown RBP9.61□□□□□ -0.87
VPS4A-203ENST00000564399 TTLL12Q14166 644 aaPredicted RBP9.61□□□□□ -0.87
VPS4A-203ENST00000564399 FBXO46Q6PJ61 603 aaPredicted RBP9.61□□□□□ -0.87
VPS4A-203ENST00000564399 MOB2Q70IA6 237 aa9.61□□□□□ -0.87
VPS4A-203ENST00000564399 TBC1D16Q8TBP0 767 aa9.61□□□□□ -0.87
VPS4A-203ENST00000564399 CEP290O15078 2479 aa9.61□□□□□ -0.87
VPS4A-203ENST00000564399 PAPPA2Q9BXP8 1791 aa9.6□□□□□ -0.87
VPS4A-203ENST00000564399 UBE2Q2LH0YL09 131 aa9.6□□□□□ -0.87
VPS4A-203ENST00000564399 GPR25O00155 361 aa9.6□□□□□ -0.87
VPS4A-203ENST00000564399 MKRN3Q13064 507 aaKnown RBP9.6□□□□□ -0.87
VPS4A-203ENST00000564399 RTL5Q5HYW3 569 aaPredicted RBP9.6□□□□□ -0.87
VPS4A-203ENST00000564399 FAM89AQ96GI7 184 aa9.6□□□□□ -0.87
VPS4A-203ENST00000564399 ANKIB1Q9P2G1 1089 aa9.6□□□□□ -0.87
VPS4A-203ENST00000564399 UFL1O94874 794 aa9.59□□□□□ -0.87
VPS4A-203ENST00000564399 RPS8P62241 208 aaKnown RBP9.59□□□□□ -0.87
VPS4A-203ENST00000564399 SF3B3Q15393 1217 aaKnown RBP9.59□□□□□ -0.87
VPS4A-203ENST00000564399 HABP4Q5JVS0 413 aaKnown RBP9.59□□□□□ -0.87
VPS4A-203ENST00000564399 PRAMEF18Q5VWM3 479 aa9.59□□□□□ -0.87
VPS4A-203ENST00000564399 AGBL3Q8NEM8 1001 aa9.59□□□□□ -0.87
VPS4A-203ENST00000564399 PLEKHF1Q96S99 279 aa9.59□□□□□ -0.87
VPS4A-203ENST00000564399 PNNQ9H307 717 aaKnown RBP9.59□□□□□ -0.87
VPS4A-203ENST00000564399 SCAF8Q9UPN6 1271 aaKnown RBP9.59□□□□□ -0.87
VPS4A-203ENST00000564399 ATP5J2-PTCD1G3V325 749 aa9.58□□□□□ -0.88
VPS4A-203ENST00000564399 FKTNO75072 461 aa9.58□□□□□ -0.88
VPS4A-203ENST00000564399 USP17L8P0C7I0 530 aa9.58□□□□□ -0.88
VPS4A-203ENST00000564399 NF2P35240 595 aa9.58□□□□□ -0.88
VPS4A-203ENST00000564399 TM4SF4P48230 202 aa9.58□□□□□ -0.88
VPS4A-203ENST00000564399 ZNF280AP59817 542 aaPredicted RBP9.58□□□□□ -0.88
VPS4A-203ENST00000564399 RSBN1LQ6PCB5 846 aaPredicted RBP9.58□□□□□ -0.88
VPS4A-203ENST00000564399 MYOZ2Q9NPC6 264 aa9.58□□□□□ -0.88
VPS4A-203ENST00000564399 GGA1Q9UJY5 639 aa9.58□□□□□ -0.88
VPS4A-203ENST00000564399 PITPNM2Q9BZ72 1349 aa9.57□□□□□ -0.88
VPS4A-203ENST00000564399 TRIOBPQ9H2D6 2365 aa9.57□□□□□ -0.88
VPS4A-203ENST00000564399 PSME4Q14997 1843 aa9.57□□□□□ -0.88
VPS4A-203ENST00000564399 IRS4O14654 1257 aaPredicted RBP9.57□□□□□ -0.88
VPS4A-203ENST00000564399 RIPK4P57078 832 aa9.57□□□□□ -0.88
VPS4A-203ENST00000564399 SREBF2Q12772 1141 aa9.57□□□□□ -0.88
VPS4A-203ENST00000564399 MAPK8IP2Q13387 824 aaPredicted RBP9.57□□□□□ -0.88
VPS4A-203ENST00000564399 NOM1Q5C9Z4 860 aaKnown RBP9.57□□□□□ -0.88
VPS4A-203ENST00000564399 ANKRD13DQ6ZTN6 518 aa9.57□□□□□ -0.88
VPS4A-203ENST00000564399 PLBD2Q8NHP8 589 aa9.57□□□□□ -0.88
VPS4A-203ENST00000564399 COL4A1P02462 1669 aa9.56□□□□□ -0.88
VPS4A-203ENST00000564399 PRKG1Q13976 671 aa9.56□□□□□ -0.88
VPS4A-203ENST00000564399 ISCA1Q9BUE6 129 aa9.56□□□□□ -0.88
VPS4A-203ENST00000564399 R3HDMLQ9H3Y0 253 aa9.56□□□□□ -0.88
VPS4A-203ENST00000564399 SEC31BQ9NQW1 1179 aa9.56□□□□□ -0.88
VPS4A-203ENST00000564399 BABAM1Q9NWV8 329 aa9.56□□□□□ -0.88
VPS4A-203ENST00000564399 PODXL2Q9NZ53 605 aa9.56□□□□□ -0.88
VPS4A-203ENST00000564399 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.56□□□□□ -0.88
VPS4A-203ENST00000564399 CHPF2Q9P2E5 772 aa9.56□□□□□ -0.88
VPS4A-203ENST00000564399 USP17L3A6NCW0 530 aa9.55□□□□□ -0.88
VPS4A-203ENST00000564399 USP17L4A6NCW7 530 aa9.55□□□□□ -0.88
VPS4A-203ENST00000564399 KRT24Q2M2I5 525 aa9.55□□□□□ -0.88
VPS4A-203ENST00000564399 NBPF9Q3BBW0 867 aa9.55□□□□□ -0.88
VPS4A-203ENST00000564399 USP17L1Q7RTZ2 530 aa9.55□□□□□ -0.88
VPS4A-203ENST00000564399 ARMC9Q7Z3E5 817 aa9.55□□□□□ -0.88
VPS4A-203ENST00000564399 OGFOD1Q8N543 542 aa9.55□□□□□ -0.88
VPS4A-203ENST00000564399 FBXW7Q969H0 707 aa9.55□□□□□ -0.88
VPS4A-203ENST00000564399 GMLQ99445 158 aa9.55□□□□□ -0.88
VPS4A-203ENST00000564399 LAS1LQ9Y4W2 734 aaKnown RBP9.55□□□□□ -0.88
VPS4A-203ENST00000564399 TRIM17Q9Y577 477 aa9.55□□□□□ -0.88
VPS4A-203ENST00000564399 POTEFA5A3E0 1075 aa9.54□□□□□ -0.88
VPS4A-203ENST00000564399 ALDH1A1P00352 501 aa9.54□□□□□ -0.88
VPS4A-203ENST00000564399 HSP90B1P14625 803 aaKnown RBP9.54□□□□□ -0.88
VPS4A-203ENST00000564399 PTPN12Q05209 780 aaKnown RBP9.54□□□□□ -0.88
VPS4A-203ENST00000564399 LMOD3Q0VAK6 560 aa9.54□□□□□ -0.88
VPS4A-203ENST00000564399 HDGFL1Q5TGJ6 251 aa9.54□□□□□ -0.88
VPS4A-203ENST00000564399 INTS3Q68E01 1043 aaKnown RBP9.54□□□□□ -0.88
VPS4A-203ENST00000564399 PODNQ7Z5L7 613 aa9.54□□□□□ -0.88
VPS4A-203ENST00000564399 CCDC85AQ96PX6 553 aaPredicted RBP9.54□□□□□ -0.88
VPS4A-203ENST00000564399 ZNF609O15014 1411 aa9.54□□□□□ -0.88
VPS4A-203ENST00000564399 NEUROD2Q15784 382 aa9.53□□□□□ -0.88
VPS4A-203ENST00000564399 CCDC152Q4G0S7 254 aa9.53□□□□□ -0.88
VPS4A-203ENST00000564399 SPRYD7Q5W111 196 aa9.53□□□□□ -0.88
VPS4A-203ENST00000564399 RIC3Q7Z5B4 369 aa9.53□□□□□ -0.88
VPS4A-203ENST00000564399 ANKRD18AQ8IVF6 992 aa9.53□□□□□ -0.88
VPS4A-203ENST00000564399 CFHR5Q9BXR6 569 aa9.53□□□□□ -0.88
VPS4A-203ENST00000564399 DBF4Q9UBU7 674 aaPredicted RBP9.53□□□□□ -0.88
VPS4A-203ENST00000564399 ANGEL1Q9UNK9 670 aaKnown RBP9.53□□□□□ -0.88
VPS4A-203ENST00000564399 XDHP47989 1333 aa9.53□□□□□ -0.88
VPS4A-203ENST00000564399 WNT10BO00744 389 aa9.52□□□□□ -0.89
VPS4A-203ENST00000564399 SASH1O94885 1247 aa9.52□□□□□ -0.89
VPS4A-203ENST00000564399 ATP2B4P23634 1241 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms