RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 EYA3Q99504 573 aa13.16□□□□□ -0.3
CLK3-205ENST00000561673 KCNQ5Q9NR82 932 aa13.16□□□□□ -0.3
CLK3-205ENST00000561673 ANKIB1Q9P2G1 1089 aa13.16□□□□□ -0.3
CLK3-205ENST00000561673 MKRN1Q9UHC7 482 aaKnown RBP13.16□□□□□ -0.3
CLK3-205ENST00000561673 ADAMTSL1Q8N6G6 1762 aa13.16□□□□□ -0.3
CLK3-205ENST00000561673 GCKRQ14397 625 aa13.15□□□□□ -0.3
CLK3-205ENST00000561673 DOK7Q18PE1 504 aa13.15□□□□□ -0.3
CLK3-205ENST00000561673 UBE3BQ7Z3V4 1068 aa13.15□□□□□ -0.3
CLK3-205ENST00000561673 ANKRD18AQ8IVF6 992 aa13.15□□□□□ -0.3
CLK3-205ENST00000561673 DNAAF4Q8WXU2 420 aa13.15□□□□□ -0.3
CLK3-205ENST00000561673 BCL2L13Q9BXK5 485 aa13.15□□□□□ -0.3
CLK3-205ENST00000561673 MYH16Q9H6N6 1097 aa13.15□□□□□ -0.3
CLK3-205ENST00000561673 GREM2Q9H772 168 aa13.15□□□□□ -0.3
CLK3-205ENST00000561673 GGA1Q9UJY5 639 aa13.15□□□□□ -0.3
CLK3-205ENST00000561673 LRRC37AA6NMS7 1700 aa13.15□□□□□ -0.3
CLK3-205ENST00000561673 PSMD14O00487 310 aa13.14□□□□□ -0.31
CLK3-205ENST00000561673 ECE2O60344 883 aa13.14□□□□□ -0.31
CLK3-205ENST00000561673 UFL1O94874 794 aa13.14□□□□□ -0.31
CLK3-205ENST00000561673 CASP7P55210 303 aa13.14□□□□□ -0.31
CLK3-205ENST00000561673 FMR1Q06787 632 aaKnown RBP eCLIP13.14□□□□□ -0.31
CLK3-205ENST00000561673 ZC3H12CQ9C0D7 883 aaKnown RBP13.14□□□□□ -0.31
CLK3-205ENST00000561673 CNOT7Q9UIV1 285 aaKnown RBP13.14□□□□□ -0.31
CLK3-205ENST00000561673 ZBTB12Q9Y330 459 aaPredicted RBP13.14□□□□□ -0.31
CLK3-205ENST00000561673 ZNF521Q96K83 1311 aa13.13□□□□□ -0.31
CLK3-205ENST00000561673 CNTNAP1P78357 1384 aa13.13□□□□□ -0.31
CLK3-205ENST00000561673 SHTN1A0MZ66 631 aa13.13□□□□□ -0.31
CLK3-205ENST00000561673 HIRAP54198 1017 aaPredicted RBP13.13□□□□□ -0.31
CLK3-205ENST00000561673 LINS1Q8NG48 757 aa13.13□□□□□ -0.31
CLK3-205ENST00000561673 CDC5LQ99459 802 aaKnown RBP13.13□□□□□ -0.31
CLK3-205ENST00000561673 BSDC1Q9NW68 430 aaPredicted RBP13.13□□□□□ -0.31
CLK3-205ENST00000561673 RTL9Q8NET4 1388 aa13.12□□□□□ -0.31
CLK3-205ENST00000561673 WTIPA6NIX2 430 aaPredicted RBP13.12□□□□□ -0.31
CLK3-205ENST00000561673 F6X3S4 739 aa13.12□□□□□ -0.31
CLK3-205ENST00000561673 TRAF5O00463 557 aa13.12□□□□□ -0.31
CLK3-205ENST00000561673 MICALL2Q8IY33 904 aa13.12□□□□□ -0.31
CLK3-205ENST00000561673 TRPM4Q8TD43 1214 aa13.12□□□□□ -0.31
CLK3-205ENST00000561673 DPF2Q92785 391 aa13.12□□□□□ -0.31
CLK3-205ENST00000561673 PLA2G12BQ9BX93 195 aa13.12□□□□□ -0.31
CLK3-205ENST00000561673 PGAP2Q9UHJ9 254 aa13.12□□□□□ -0.31
CLK3-205ENST00000561673 MINPP1Q9UNW1 487 aa13.12□□□□□ -0.31
CLK3-205ENST00000561673 XDHP47989 1333 aa13.12□□□□□ -0.31
CLK3-205ENST00000561673 H7C1D1 291 aa13.11□□□□□ -0.31
CLK3-205ENST00000561673 CSF1RP07333 972 aa13.11□□□□□ -0.31
CLK3-205ENST00000561673 VEGFBP49765 207 aa13.11□□□□□ -0.31
CLK3-205ENST00000561673 BEND3Q5T5X7 828 aa13.11□□□□□ -0.31
CLK3-205ENST00000561673 IFFO2Q5TF58 517 aa13.11□□□□□ -0.31
CLK3-205ENST00000561673 CST9Q5W186 159 aa13.11□□□□□ -0.31
CLK3-205ENST00000561673 G3V3G9 751 aa13.1□□□□□ -0.31
CLK3-205ENST00000561673 VIL1P09327 827 aaKnown RBP13.1□□□□□ -0.31
CLK3-205ENST00000561673 HSPA1AP0DMV8 641 aaKnown RBP13.1□□□□□ -0.31
CLK3-205ENST00000561673 HSPA1BP0DMV9 641 aaKnown RBP13.1□□□□□ -0.31
CLK3-205ENST00000561673 ITGA6P23229 1130 aa13.1□□□□□ -0.31
CLK3-205ENST00000561673 ATP2B4P23634 1241 aa13.1□□□□□ -0.31
CLK3-205ENST00000561673 RPS12P25398 132 aaKnown RBP13.1□□□□□ -0.31
CLK3-205ENST00000561673 DCAF8Q5TAQ9 597 aa13.1□□□□□ -0.31
CLK3-205ENST00000561673 SAMD7Q7Z3H4 446 aa13.1□□□□□ -0.31
CLK3-205ENST00000561673 ZC3H15Q8WU90 426 aaKnown RBP13.1□□□□□ -0.31
CLK3-205ENST00000561673 RTN4Q9NQC3 1192 aaKnown RBP13.1□□□□□ -0.31
CLK3-205ENST00000561673 RASSF10A6NK89 507 aa13.09□□□□□ -0.31
CLK3-205ENST00000561673 EGFRP00533 1210 aa13.09□□□□□ -0.31
CLK3-205ENST00000561673 IGHMBP2P38935 993 aaKnown RBP13.09□□□□□ -0.31
CLK3-205ENST00000561673 DEFB115Q30KQ5 88 aa13.09□□□□□ -0.31
CLK3-205ENST00000561673 FAM161AQ3B820 660 aa13.09□□□□□ -0.31
CLK3-205ENST00000561673 COL13A1Q5TAT6 717 aaPredicted RBP13.09□□□□□ -0.31
CLK3-205ENST00000561673 ABT1Q9ULW3 272 aaKnown RBP13.09□□□□□ -0.31
CLK3-205ENST00000561673 CCT4P50991 539 aaKnown RBP13.08□□□□□ -0.32
CLK3-205ENST00000561673 FOXO4P98177 505 aa13.08□□□□□ -0.32
CLK3-205ENST00000561673 TBC1D10BQ4KMP7 808 aaPredicted RBP13.08□□□□□ -0.32
CLK3-205ENST00000561673 GLIS2Q9BZE0 524 aaPredicted RBP13.08□□□□□ -0.32
CLK3-205ENST00000561673 E9PSI1 815 aa13.07□□□□□ -0.32
CLK3-205ENST00000561673 RBM26Q5T8P6 1007 aaKnown RBP13.07□□□□□ -0.32
CLK3-205ENST00000561673 SLC4A10Q6U841 1118 aa13.07□□□□□ -0.32
CLK3-205ENST00000561673 CDC37L1Q7L3B6 337 aa13.07□□□□□ -0.32
CLK3-205ENST00000561673 PODNQ7Z5L7 613 aa13.07□□□□□ -0.32
CLK3-205ENST00000561673 USP48Q86UV5 1035 aa13.07□□□□□ -0.32
CLK3-205ENST00000561673 MPHOSPH8Q99549 860 aa13.07□□□□□ -0.32
CLK3-205ENST00000561673 ANKRD18BA2A2Z9 1011 aa13.06□□□□□ -0.32
CLK3-205ENST00000561673 CELF2O95319 508 aaKnown RBP13.06□□□□□ -0.32
CLK3-205ENST00000561673 SLFN5Q08AF3 891 aa13.06□□□□□ -0.32
CLK3-205ENST00000561673 RSBN1LQ6PCB5 846 aaPredicted RBP13.06□□□□□ -0.32
CLK3-205ENST00000561673 TXNRD3Q86VQ6 643 aa13.06□□□□□ -0.32
CLK3-205ENST00000561673 AGBL3Q8NEM8 1001 aa13.06□□□□□ -0.32
CLK3-205ENST00000561673 LEMD3Q9Y2U8 911 aa13.06□□□□□ -0.32
CLK3-205ENST00000561673 WDR33Q9C0J8 1336 aaKnown RBP13.06□□□□□ -0.32
CLK3-205ENST00000561673 USP17L3A6NCW0 530 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 USP17L4A6NCW7 530 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 GRM8O00222 908 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 IFIT5Q13325 482 aaKnown RBP13.05□□□□□ -0.32
CLK3-205ENST00000561673 EPHA10Q5JZY3 1008 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 LMBR1LQ6UX01 489 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 DLK2Q6UY11 383 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 USP17L1Q7RTZ2 530 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 MRPL50Q8N5N7 158 aaKnown RBP13.05□□□□□ -0.32
CLK3-205ENST00000561673 GMLQ99445 158 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 SRCIN1Q9C0H9 1055 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 ANKRD2Q9GZV1 360 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 C9orf78Q9NZ63 289 aaPredicted RBP13.05□□□□□ -0.32
CLK3-205ENST00000561673 CHMP3Q9Y3E7 222 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 TLL2Q9Y6L7 1015 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 ZNF804BA4D1E1 1349 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms