RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ABT1Q9ULW3 272 aaKnown RBP13.1□□□□□ -0.31
LDLR-214ENST00000560628 G3V3G9 751 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 H7C1D1 291 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 ECE2O60344 883 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 UFL1O94874 794 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 CTSWP56202 376 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 FLIIQ13045 1269 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 DCAF8Q5TAQ9 597 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 TTLL11Q8NHH1 800 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 TRPM4Q8TD43 1214 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 GGA1Q9UJY5 639 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 ADAMTSL1Q8N6G6 1762 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 CDHR2Q9BYE9 1310 aa13.09□□□□□ -0.31
LDLR-214ENST00000560628 DUOX1Q9NRD9 1551 aa13.08□□□□□ -0.32
LDLR-214ENST00000560628 WTIPA6NIX2 430 aaPredicted RBP13.08□□□□□ -0.32
LDLR-214ENST00000560628 H7C1W4 665 aa13.08□□□□□ -0.32
LDLR-214ENST00000560628 FKBP5Q13451 457 aaPredicted RBP13.08□□□□□ -0.32
LDLR-214ENST00000560628 RBM26Q5T8P6 1007 aaKnown RBP13.08□□□□□ -0.32
LDLR-214ENST00000560628 CST9Q5W186 159 aa13.08□□□□□ -0.32
LDLR-214ENST00000560628 SAMD7Q7Z3H4 446 aa13.08□□□□□ -0.32
LDLR-214ENST00000560628 UBE3BQ7Z3V4 1068 aa13.08□□□□□ -0.32
LDLR-214ENST00000560628 MICALL2Q8IY33 904 aa13.08□□□□□ -0.32
LDLR-214ENST00000560628 GLIS2Q9BZE0 524 aaPredicted RBP13.08□□□□□ -0.32
LDLR-214ENST00000560628 GREM2Q9H772 168 aa13.08□□□□□ -0.32
LDLR-214ENST00000560628 PODXL2Q9NZ53 605 aa13.08□□□□□ -0.32
LDLR-214ENST00000560628 RASSF10A6NK89 507 aa13.07□□□□□ -0.32
LDLR-214ENST00000560628 GCKRQ14397 625 aa13.07□□□□□ -0.32
LDLR-214ENST00000560628 TBC1D10BQ4KMP7 808 aaPredicted RBP13.07□□□□□ -0.32
LDLR-214ENST00000560628 DNAAF4Q8WXU2 420 aa13.07□□□□□ -0.32
LDLR-214ENST00000560628 CDC5LQ99459 802 aaKnown RBP13.07□□□□□ -0.32
LDLR-214ENST00000560628 F6X3S4 739 aa13.06□□□□□ -0.32
LDLR-214ENST00000560628 GRM1Q13255 1194 aa13.06□□□□□ -0.32
LDLR-214ENST00000560628 PAXIP1Q6ZW49 1069 aaPredicted RBP13.06□□□□□ -0.32
LDLR-214ENST00000560628 DPF2Q92785 391 aa13.06□□□□□ -0.32
LDLR-214ENST00000560628 PGAP2Q9UHJ9 254 aa13.06□□□□□ -0.32
LDLR-214ENST00000560628 MINPP1Q9UNW1 487 aa13.06□□□□□ -0.32
LDLR-214ENST00000560628 RTL9Q8NET4 1388 aa13.06□□□□□ -0.32
LDLR-214ENST00000560628 FOXN1O15353 648 aa13.05□□□□□ -0.32
LDLR-214ENST00000560628 CELF2O95319 508 aaKnown RBP13.05□□□□□ -0.32
LDLR-214ENST00000560628 EGFRP00533 1210 aa13.05□□□□□ -0.32
LDLR-214ENST00000560628 VIL1P09327 827 aaKnown RBP13.05□□□□□ -0.32
LDLR-214ENST00000560628 ATP2B4P23634 1241 aa13.05□□□□□ -0.32
LDLR-214ENST00000560628 DLK2Q6UY11 383 aa13.05□□□□□ -0.32
LDLR-214ENST00000560628 USP48Q86UV5 1035 aa13.05□□□□□ -0.32
LDLR-214ENST00000560628 TNS4Q8IZW8 715 aa13.05□□□□□ -0.32
LDLR-214ENST00000560628 LINS1Q8NG48 757 aa13.05□□□□□ -0.32
LDLR-214ENST00000560628 ZC3H15Q8WU90 426 aaKnown RBP13.05□□□□□ -0.32
LDLR-214ENST00000560628 ZNF408Q9H9D4 720 aa13.05□□□□□ -0.32
LDLR-214ENST00000560628 XDHP47989 1333 aa13.05□□□□□ -0.32
LDLR-214ENST00000560628 WDR33Q9C0J8 1336 aaKnown RBP13.05□□□□□ -0.32
LDLR-214ENST00000560628 LRRC37AA6NMS7 1700 aa13.05□□□□□ -0.32
LDLR-214ENST00000560628 CYP4F22Q6NT55 531 aa13.04□□□□□ -0.32
LDLR-214ENST00000560628 CDC37L1Q7L3B6 337 aa13.04□□□□□ -0.32
LDLR-214ENST00000560628 MYH16Q9H6N6 1097 aa13.04□□□□□ -0.32
LDLR-214ENST00000560628 BSDC1Q9NW68 430 aaPredicted RBP13.04□□□□□ -0.32
LDLR-214ENST00000560628 ITGA6P23229 1130 aa13.03□□□□□ -0.32
LDLR-214ENST00000560628 RPS12P25398 132 aaKnown RBP13.03□□□□□ -0.32
LDLR-214ENST00000560628 IGHMBP2P38935 993 aaKnown RBP13.03□□□□□ -0.32
LDLR-214ENST00000560628 CASP7P55210 303 aa13.03□□□□□ -0.32
LDLR-214ENST00000560628 FAM161AQ3B820 660 aa13.03□□□□□ -0.32
LDLR-214ENST00000560628 AIDAQ96BJ3 306 aa13.03□□□□□ -0.32
LDLR-214ENST00000560628 CAPNS2Q96L46 248 aa13.03□□□□□ -0.32
LDLR-214ENST00000560628 WBP1LQ9NX94 342 aa13.03□□□□□ -0.32
LDLR-214ENST00000560628 TLL2Q9Y6L7 1015 aa13.03□□□□□ -0.32
LDLR-214ENST00000560628 CAPN15O75808 1086 aa13.02□□□□□ -0.33
LDLR-214ENST00000560628 CSF1RP07333 972 aa13.02□□□□□ -0.33
LDLR-214ENST00000560628 CCT4P50991 539 aaKnown RBP13.02□□□□□ -0.33
LDLR-214ENST00000560628 PLA2G12BQ9BX93 195 aa13.02□□□□□ -0.33
LDLR-214ENST00000560628 PCNTO95613 3336 aa13.01□□□□□ -0.33
LDLR-214ENST00000560628 ECE1P42892 770 aa13.01□□□□□ -0.33
LDLR-214ENST00000560628 KIF4BQ2VIQ3 1234 aa13.01□□□□□ -0.33
LDLR-214ENST00000560628 BEND3Q5T5X7 828 aa13.01□□□□□ -0.33
LDLR-214ENST00000560628 RSBN1LQ6PCB5 846 aaPredicted RBP13.01□□□□□ -0.33
LDLR-214ENST00000560628 KRT26Q7Z3Y9 468 aa13.01□□□□□ -0.33
LDLR-214ENST00000560628 SAPCD2Q86UD0 394 aa13.01□□□□□ -0.33
LDLR-214ENST00000560628 DCPSQ96C86 337 aaKnown RBP13.01□□□□□ -0.33
LDLR-214ENST00000560628 MPHOSPH8Q99549 860 aa13.01□□□□□ -0.33
LDLR-214ENST00000560628 CHMP3Q9Y3E7 222 aa13.01□□□□□ -0.33
LDLR-214ENST00000560628 ASTN2O75129 1339 aaPredicted RBP13.01□□□□□ -0.33
LDLR-214ENST00000560628 USP17L3A6NCW0 530 aa13□□□□□ -0.33
LDLR-214ENST00000560628 USP17L4A6NCW7 530 aa13□□□□□ -0.33
LDLR-214ENST00000560628 ADM5C9JUS6 153 aa13□□□□□ -0.33
LDLR-214ENST00000560628 AOC2O75106 756 aa13□□□□□ -0.33
LDLR-214ENST00000560628 CTCFP49711 727 aaPredicted RBP13□□□□□ -0.33
LDLR-214ENST00000560628 LBX1P52954 281 aa13□□□□□ -0.33
LDLR-214ENST00000560628 FOXO4P98177 505 aa13□□□□□ -0.33
LDLR-214ENST00000560628 SLC4A10Q6U841 1118 aa13□□□□□ -0.33
LDLR-214ENST00000560628 USP17L1Q7RTZ2 530 aa13□□□□□ -0.33
LDLR-214ENST00000560628 PODNQ7Z5L7 613 aa13□□□□□ -0.33
LDLR-214ENST00000560628 TXNRD3Q86VQ6 643 aa13□□□□□ -0.33
LDLR-214ENST00000560628 FBXW7Q969H0 707 aa13□□□□□ -0.33
LDLR-214ENST00000560628 MXD3Q9BW11 206 aa13□□□□□ -0.33
LDLR-214ENST00000560628 ANKRD18BA2A2Z9 1011 aa12.99□□□□□ -0.33
LDLR-214ENST00000560628 KLRK1P26718 216 aa12.99□□□□□ -0.33
LDLR-214ENST00000560628 MAP2K1Q02750 393 aaPredicted RBP12.99□□□□□ -0.33
LDLR-214ENST00000560628 AGBL3Q8NEM8 1001 aa12.99□□□□□ -0.33
LDLR-214ENST00000560628 HELBQ8NG08 1087 aaPredicted RBP12.99□□□□□ -0.33
LDLR-214ENST00000560628 GMLQ99445 158 aa12.99□□□□□ -0.33
LDLR-214ENST00000560628 ANKRD2Q9GZV1 360 aa12.99□□□□□ -0.33
LDLR-214ENST00000560628 LEMD3Q9Y2U8 911 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms