RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 C6orf229H3BNL8 230 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 RIMBP2O15034 1052 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 ECE2O60344 883 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 EGFRP00533 1210 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 RPS12P25398 132 aaKnown RBP17.98■□□□□ 0.47
LDLR-213ENST00000560502 RPS8P62241 208 aaKnown RBP17.98■□□□□ 0.47
LDLR-213ENST00000560502 SAMD7Q7Z3H4 446 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 USP48Q86UV5 1035 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 ZBTB38Q8NAP3 1195 aaPredicted RBP17.98■□□□□ 0.47
LDLR-213ENST00000560502 EYA3Q99504 573 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 ZNF408Q9H9D4 720 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 IFT57Q9NWB7 429 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 PODXL2Q9NZ53 605 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 TSKSQ9UJT2 592 aa17.98■□□□□ 0.47
LDLR-213ENST00000560502 CA12O43570 354 aa17.97■□□□□ 0.47
LDLR-213ENST00000560502 GOLGA2Q08379 1002 aa17.97■□□□□ 0.47
LDLR-213ENST00000560502 PHAXQ9H814 394 aaKnown RBP17.97■□□□□ 0.47
LDLR-213ENST00000560502 KCNQ5Q9NR82 932 aa17.97■□□□□ 0.47
LDLR-213ENST00000560502 ZNF521Q96K83 1311 aa17.97■□□□□ 0.47
LDLR-213ENST00000560502 MYH3P11055 1940 aa17.96■□□□□ 0.47
LDLR-213ENST00000560502 DOK7Q18PE1 504 aa17.96■□□□□ 0.47
LDLR-213ENST00000560502 TBC1D10BQ4KMP7 808 aaPredicted RBP17.96■□□□□ 0.47
LDLR-213ENST00000560502 DLK2Q6UY11 383 aa17.96■□□□□ 0.47
LDLR-213ENST00000560502 RIC3Q7Z5B4 369 aa17.96■□□□□ 0.47
LDLR-213ENST00000560502 SEC31BQ9NQW1 1179 aa17.96■□□□□ 0.47
LDLR-213ENST00000560502 GNAI1P63096 354 aa17.95■□□□□ 0.46
LDLR-213ENST00000560502 CCDC27Q2M243 656 aa17.95■□□□□ 0.46
LDLR-213ENST00000560502 CCDC191Q8NCU4 936 aa17.95■□□□□ 0.46
LDLR-213ENST00000560502 ZNF646O15015 1829 aaPredicted RBP17.95■□□□□ 0.46
LDLR-213ENST00000560502 APAF1O14727 1248 aa17.94■□□□□ 0.46
LDLR-213ENST00000560502 PCCAP05165 728 aaPredicted RBP17.94■□□□□ 0.46
LDLR-213ENST00000560502 VIL1P09327 827 aaKnown RBP17.94■□□□□ 0.46
LDLR-213ENST00000560502 HUNKP57058 714 aa17.94■□□□□ 0.46
LDLR-213ENST00000560502 NOGQ13253 232 aa17.94■□□□□ 0.46
LDLR-213ENST00000560502 KRT26Q7Z3Y9 468 aa17.94■□□□□ 0.46
LDLR-213ENST00000560502 ZIC5Q96T25 663 aa17.94■□□□□ 0.46
LDLR-213ENST00000560502 MYD88Q99836 296 aa17.94■□□□□ 0.46
LDLR-213ENST00000560502 SPEF2Q9C093 1822 aa17.93■□□□□ 0.46
LDLR-213ENST00000560502 ADM5C9JUS6 153 aa17.93■□□□□ 0.46
LDLR-213ENST00000560502 HSP90B1P14625 803 aaKnown RBP17.93■□□□□ 0.46
LDLR-213ENST00000560502 CALD1Q05682 793 aaKnown RBP17.93■□□□□ 0.46
LDLR-213ENST00000560502 ZC3H12CQ9C0D7 883 aaKnown RBP17.93■□□□□ 0.46
LDLR-213ENST00000560502 FAM155AB1AL88 458 aaPredicted RBP17.92■□□□□ 0.46
LDLR-213ENST00000560502 ELL2O00472 640 aaPredicted RBP17.92■□□□□ 0.46
LDLR-213ENST00000560502 PDE8AO60658 829 aa17.92■□□□□ 0.46
LDLR-213ENST00000560502 UFL1O94874 794 aa17.92■□□□□ 0.46
LDLR-213ENST00000560502 KIF4BQ2VIQ3 1234 aa17.92■□□□□ 0.46
LDLR-213ENST00000560502 CCDC152Q4G0S7 254 aa17.92■□□□□ 0.46
LDLR-213ENST00000560502 C8orf58Q8NAV2 365 aa17.92■□□□□ 0.46
LDLR-213ENST00000560502 METTL22Q9BUU2 404 aaPredicted RBP17.92■□□□□ 0.46
LDLR-213ENST00000560502 CWC25Q9NXE8 425 aaPredicted RBP17.92■□□□□ 0.46
LDLR-213ENST00000560502 ZNF280AP59817 542 aaPredicted RBP17.91■□□□□ 0.46
LDLR-213ENST00000560502 RGMBQ6NW40 437 aa17.91■□□□□ 0.46
LDLR-213ENST00000560502 DCPSQ96C86 337 aaKnown RBP17.91■□□□□ 0.46
LDLR-213ENST00000560502 GBA2Q9HCG7 927 aaPredicted RBP17.91■□□□□ 0.46
LDLR-213ENST00000560502 GGA1Q9UJY5 639 aa17.91■□□□□ 0.46
LDLR-213ENST00000560502 AKAP11Q9UKA4 1901 aa17.9■□□□□ 0.46
LDLR-213ENST00000560502 RBM26Q5T8P6 1007 aaKnown RBP17.9■□□□□ 0.46
LDLR-213ENST00000560502 GGA3Q9NZ52 723 aa17.9■□□□□ 0.46
LDLR-213ENST00000560502 ANKIB1Q9P2G1 1089 aa17.9■□□□□ 0.46
LDLR-213ENST00000560502 ASTN2O75129 1339 aaPredicted RBP17.9■□□□□ 0.46
LDLR-213ENST00000560502 RGS19P49795 217 aa17.89■□□□□ 0.45
LDLR-213ENST00000560502 JARID2Q92833 1246 aaPredicted RBP17.89■□□□□ 0.45
LDLR-213ENST00000560502 GMLQ99445 158 aa17.89■□□□□ 0.45
LDLR-213ENST00000560502 MCOLN1Q9GZU1 580 aa17.89■□□□□ 0.45
LDLR-213ENST00000560502 GTF3C3Q9Y5Q9 886 aa17.89■□□□□ 0.45
LDLR-213ENST00000560502 XDHP47989 1333 aa17.89■□□□□ 0.45
LDLR-213ENST00000560502 CCDC85CA6NKD9 419 aa17.88■□□□□ 0.45
LDLR-213ENST00000560502 DDX58O95786 925 aaKnown RBP17.88■□□□□ 0.45
LDLR-213ENST00000560502 FAM161AQ3B820 660 aa17.88■□□□□ 0.45
LDLR-213ENST00000560502 CCDC30Q5VVM6 783 aa17.88■□□□□ 0.45
LDLR-213ENST00000560502 RSBN1LQ6PCB5 846 aaPredicted RBP17.88■□□□□ 0.45
LDLR-213ENST00000560502 C2orf69Q8N8R5 385 aa17.88■□□□□ 0.45
LDLR-213ENST00000560502 AGBL3Q8NEM8 1001 aa17.88■□□□□ 0.45
LDLR-213ENST00000560502 CCDC85AQ96PX6 553 aaPredicted RBP17.88■□□□□ 0.45
LDLR-213ENST00000560502 PAPPA2Q9BXP8 1791 aa17.88■□□□□ 0.45
LDLR-213ENST00000560502 IGKV5-2P06315 115 aa17.87■□□□□ 0.45
LDLR-213ENST00000560502 NEFLP07196 543 aa17.87■□□□□ 0.45
LDLR-213ENST00000560502 ANKRD18AQ8IVF6 992 aa17.87■□□□□ 0.45
LDLR-213ENST00000560502 WDR63Q8IWG1 891 aa17.87■□□□□ 0.45
LDLR-213ENST00000560502 SULF1Q8IWU6 871 aa17.87■□□□□ 0.45
LDLR-213ENST00000560502 TSPYL6Q8N831 410 aa17.87■□□□□ 0.45
LDLR-213ENST00000560502 CCDC102AQ96A19 550 aa17.87■□□□□ 0.45
LDLR-213ENST00000560502 CDCA5Q96FF9 252 aa17.87■□□□□ 0.45
LDLR-213ENST00000560502 CHMP4AQ9BY43 222 aa17.87■□□□□ 0.45
LDLR-213ENST00000560502 MAP3K2Q9Y2U5 619 aa17.87■□□□□ 0.45
LDLR-213ENST00000560502 E9PSI1 815 aa17.86■□□□□ 0.45
LDLR-213ENST00000560502 SLC10A3P09131 477 aa17.86■□□□□ 0.45
LDLR-213ENST00000560502 CTSWP56202 376 aa17.86■□□□□ 0.45
LDLR-213ENST00000560502 KSR2Q6VAB6 950 aa17.86■□□□□ 0.45
LDLR-213ENST00000560502 SAGE1Q9NXZ1 904 aa17.86■□□□□ 0.45
LDLR-213ENST00000560502 MED23Q9ULK4 1368 aa17.86■□□□□ 0.45
LDLR-213ENST00000560502 G3V3G9 751 aa17.85■□□□□ 0.45
LDLR-213ENST00000560502 ATP2B4P23634 1241 aa17.85■□□□□ 0.45
LDLR-213ENST00000560502 KIF23Q02241 960 aaPredicted RBP17.85■□□□□ 0.45
LDLR-213ENST00000560502 DCAF8Q5TAQ9 597 aa17.85■□□□□ 0.45
LDLR-213ENST00000560502 WWC1Q8IX03 1113 aa17.85■□□□□ 0.45
LDLR-213ENST00000560502 CACNA1FO60840 1977 aa17.84■□□□□ 0.45
LDLR-213ENST00000560502 PITPNM2Q9BZ72 1349 aa17.84■□□□□ 0.45
LDLR-213ENST00000560502 PI4KAP2A4QPH2 592 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 154.9 ms