RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ATP8B2P98198 1209 aa27.17■■□□□ 1.94
SNX1-210ENST00000560260 POLA2Q14181 598 aa27.17■■□□□ 1.94
SNX1-210ENST00000560260 LRRC24Q50LG9 513 aa27.17■■□□□ 1.94
SNX1-210ENST00000560260 CENPBP07199 599 aaPredicted RBP27.16■■□□□ 1.94
SNX1-210ENST00000560260 LDHAL6AQ6ZMR3 332 aa27.16■■□□□ 1.94
SNX1-210ENST00000560260 SIRT2Q8IXJ6 389 aa27.16■■□□□ 1.94
SNX1-210ENST00000560260 RTKN2Q8IZC4 609 aa27.16■■□□□ 1.94
SNX1-210ENST00000560260 EXOC6Q8TAG9 804 aa27.16■■□□□ 1.94
SNX1-210ENST00000560260 CHMP4BQ9H444 224 aaKnown RBP27.16■■□□□ 1.94
SNX1-210ENST00000560260 SBF1O95248 1867 aa27.16■■□□□ 1.94
SNX1-210ENST00000560260 LTBP3Q9NS15 1303 aa27.16■■□□□ 1.94
SNX1-210ENST00000560260 FKBP4Q02790 459 aaKnown RBP eCLIP27.16■■□□□ 1.94
SNX1-210ENST00000560260 SSH3Q8TE77 659 aa27.16■■□□□ 1.94
SNX1-210ENST00000560260 TAOK3Q9H2K8 898 aa27.16■■□□□ 1.94
SNX1-210ENST00000560260 WTIPA6NIX2 430 aaPredicted RBP27.15■■□□□ 1.94
SNX1-210ENST00000560260 CHRNDQ07001 517 aa27.15■■□□□ 1.94
SNX1-210ENST00000560260 MPNDQ8N594 471 aa27.15■■□□□ 1.94
SNX1-210ENST00000560260 SIL1Q9H173 461 aa27.15■■□□□ 1.94
SNX1-210ENST00000560260 COPRSQ9NQ92 184 aa27.15■■□□□ 1.94
SNX1-210ENST00000560260 CNNM1Q9NRU3 951 aa27.15■■□□□ 1.94
SNX1-210ENST00000560260 RIPOR2Q9Y4F9 1068 aa27.15■■□□□ 1.94
SNX1-210ENST00000560260 COL4A5P29400 1685 aa27.14■■□□□ 1.93
SNX1-210ENST00000560260 DCAF8L1A6NGE4 600 aa27.14■■□□□ 1.93
SNX1-210ENST00000560260 DPP8Q6V1X1 898 aaPredicted RBP27.14■■□□□ 1.93
SNX1-210ENST00000560260 PSMD1Q99460 953 aa27.14■■□□□ 1.93
SNX1-210ENST00000560260 RTFDC1Q9BY42 306 aaPredicted RBP27.14■■□□□ 1.93
SNX1-210ENST00000560260 PODXL2Q9NZ53 605 aa27.14■■□□□ 1.93
SNX1-210ENST00000560260 NSFL1CQ9UNZ2 370 aaKnown RBP27.14■■□□□ 1.93
SNX1-210ENST00000560260 EYA2O00167 538 aa27.13■■□□□ 1.93
SNX1-210ENST00000560260 ATG9AQ7Z3C6 839 aa27.13■■□□□ 1.93
SNX1-210ENST00000560260 HELBQ8NG08 1087 aaPredicted RBP27.13■■□□□ 1.93
SNX1-210ENST00000560260 GPR101Q96P66 508 aaPredicted RBP27.13■■□□□ 1.93
SNX1-210ENST00000560260 ZNF277Q9NRM2 450 aaPredicted RBP27.13■■□□□ 1.93
SNX1-210ENST00000560260 POLLQ9UGP5 575 aa27.13■■□□□ 1.93
SNX1-210ENST00000560260 CCDC88AQ3V6T2 1871 aa27.12■■□□□ 1.93
SNX1-210ENST00000560260 XDHP47989 1333 aa27.12■■□□□ 1.93
SNX1-210ENST00000560260 TMX4Q9H1E5 349 aaPredicted RBP27.12■■□□□ 1.93
SNX1-210ENST00000560260 GRIPAP1Q4V328 841 aa27.11■■□□□ 1.93
SNX1-210ENST00000560260 RPAP2Q8IXW5 612 aaPredicted RBP27.11■■□□□ 1.93
SNX1-210ENST00000560260 TBC1D16Q8TBP0 767 aa27.11■■□□□ 1.93
SNX1-210ENST00000560260 PCDHB15Q9Y5E8 787 aa27.11■■□□□ 1.93
SNX1-210ENST00000560260 SNAP23O00161 211 aa27.1■■□□□ 1.93
SNX1-210ENST00000560260 TAF5LO75529 589 aa27.1■■□□□ 1.93
SNX1-210ENST00000560260 VGLL2Q8N8G2 317 aa27.1■■□□□ 1.93
SNX1-210ENST00000560260 ANKIB1Q9P2G1 1089 aa27.1■■□□□ 1.93
SNX1-210ENST00000560260 CIAO1O76071 339 aa27.09■■□□□ 1.93
SNX1-210ENST00000560260 UFL1O94874 794 aa27.09■■□□□ 1.93
SNX1-210ENST00000560260 GGA1Q9UJY5 639 aa27.09■■□□□ 1.93
SNX1-210ENST00000560260 TIAM2Q8IVF5 1701 aa27.08■■□□□ 1.93
SNX1-210ENST00000560260 ANKRD2Q9GZV1 360 aa27.08■■□□□ 1.93
SNX1-210ENST00000560260 FBXO3Q9UK99 471 aa27.08■■□□□ 1.93
SNX1-210ENST00000560260 MROH5Q6ZUA9 1318 aa27.07■■□□□ 1.92
SNX1-210ENST00000560260 DICER1Q9UPY3 1922 aaKnown RBP27.07■■□□□ 1.92
SNX1-210ENST00000560260 CHD4Q14839 1912 aa27.06■■□□□ 1.92
SNX1-210ENST00000560260 C6orf229H3BNL8 230 aa27.06■■□□□ 1.92
SNX1-210ENST00000560260 LMNB1P20700 586 aa27.06■■□□□ 1.92
SNX1-210ENST00000560260 ATP2B4P23634 1241 aa27.06■■□□□ 1.92
SNX1-210ENST00000560260 KLRK1P26718 216 aa27.06■■□□□ 1.92
SNX1-210ENST00000560260 IARSP41252 1262 aaKnown RBP27.06■■□□□ 1.92
SNX1-210ENST00000560260 AOC3Q16853 763 aa27.06■■□□□ 1.92
SNX1-210ENST00000560260 METTL24Q5JXM2 366 aa27.06■■□□□ 1.92
SNX1-210ENST00000560260 C9orf131Q5VYM1 1079 aa27.06■■□□□ 1.92
SNX1-210ENST00000560260 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.06■■□□□ 1.92
SNX1-210ENST00000560260 RNF181Q9P0P0 153 aa27.05■■□□□ 1.92
SNX1-210ENST00000560260 NOP58Q9Y2X3 529 aaKnown RBP27.05■■□□□ 1.92
SNX1-210ENST00000560260 IRS2Q9Y4H2 1338 aa27.05■■□□□ 1.92
SNX1-210ENST00000560260 IL15P40933 162 aaPredicted RBP27.04■■□□□ 1.92
SNX1-210ENST00000560260 SUPT20HQ8NEM7 779 aa27.04■■□□□ 1.92
SNX1-210ENST00000560260 LEMD3Q9Y2U8 911 aa27.04■■□□□ 1.92
SNX1-210ENST00000560260 ZNF804BA4D1E1 1349 aa27.04■■□□□ 1.92
SNX1-210ENST00000560260 PPIP5K2O43314 1243 aa27.03■■□□□ 1.92
SNX1-210ENST00000560260 KIAA2012Q0VF49 1180 aa27.03■■□□□ 1.92
SNX1-210ENST00000560260 TXNRD3Q86VQ6 643 aa27.03■■□□□ 1.92
SNX1-210ENST00000560260 MED23Q9ULK4 1368 aa27.03■■□□□ 1.92
SNX1-210ENST00000560260 RIMBP2O15034 1052 aa27.02■■□□□ 1.92
SNX1-210ENST00000560260 SURF6O75683 361 aaKnown RBP27.02■■□□□ 1.92
SNX1-210ENST00000560260 SASH1O94885 1247 aa27.02■■□□□ 1.92
SNX1-210ENST00000560260 PDE8BO95263 885 aa27.02■■□□□ 1.92
SNX1-210ENST00000560260 EXOC6BQ9Y2D4 811 aa27.02■■□□□ 1.92
SNX1-210ENST00000560260 HMMRO75330 724 aa27.01■■□□□ 1.91
SNX1-210ENST00000560260 FGFR2P21802 821 aa27■■□□□ 1.91
SNX1-210ENST00000560260 TFCP2Q12800 502 aa27■■□□□ 1.91
SNX1-210ENST00000560260 G3BP1Q13283 466 aaKnown RBP eCLIP27■■□□□ 1.91
SNX1-210ENST00000560260 WASHC4Q2M389 1173 aa27■■□□□ 1.91
SNX1-210ENST00000560260 LARGE2Q8N3Y3 721 aa27■■□□□ 1.91
SNX1-210ENST00000560260 KCNJ4P48050 445 aa26.99■■□□□ 1.91
SNX1-210ENST00000560260 AAMPQ13685 434 aa26.99■■□□□ 1.91
SNX1-210ENST00000560260 ARAP2Q8WZ64 1704 aa26.99■■□□□ 1.91
SNX1-210ENST00000560260 EYA3Q99504 573 aa26.99■■□□□ 1.91
SNX1-210ENST00000560260 UBE4AQ14139 1066 aa26.98■■□□□ 1.91
SNX1-210ENST00000560260 VPS33BQ9H267 617 aa26.98■■□□□ 1.91
SNX1-210ENST00000560260 CEP126Q9P2H0 1117 aa26.98■■□□□ 1.91
SNX1-210ENST00000560260 ZNF609O15014 1411 aa26.97■■□□□ 1.91
SNX1-210ENST00000560260 PUM3Q15397 648 aaKnown RBP26.96■■□□□ 1.91
SNX1-210ENST00000560260 DOK7Q18PE1 504 aa26.96■■□□□ 1.91
SNX1-210ENST00000560260 C15orf52Q6ZUT6 534 aaKnown RBP26.96■■□□□ 1.91
SNX1-210ENST00000560260 ZC3H12CQ9C0D7 883 aaKnown RBP26.96■■□□□ 1.91
SNX1-210ENST00000560260 DBNDD1Q9H9R9 158 aa26.96■■□□□ 1.91
SNX1-210ENST00000560260 SCN9AQ15858 1988 aa26.95■■□□□ 1.91
SNX1-210ENST00000560260 OS9Q13438 667 aaPredicted RBP26.95■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms