RNA–Protein interactions for RNA: ENST00000558867.1

CDC42BPB-203, Transcript of CDC42 binding protein kinase beta, humanhuman

TSL 3

Gene CDC42BPB, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPB-203ENST00000558867 KIF4BQ2VIQ3 1234 aa20.76■□□□□ 0.91
CDC42BPB-203ENST00000558867 ISCA1Q9BUE6 129 aa20.76■□□□□ 0.91
CDC42BPB-203ENST00000558867 PCDH10Q9P2E7 1040 aa20.76■□□□□ 0.91
CDC42BPB-203ENST00000558867 POLLQ9UGP5 575 aa20.76■□□□□ 0.91
CDC42BPB-203ENST00000558867 CENPBP07199 599 aaPredicted RBP20.75■□□□□ 0.91
CDC42BPB-203ENST00000558867 GPSM2P81274 684 aa20.75■□□□□ 0.91
CDC42BPB-203ENST00000558867 KIF23Q02241 960 aaPredicted RBP20.75■□□□□ 0.91
CDC42BPB-203ENST00000558867 DOK7Q18PE1 504 aa20.75■□□□□ 0.91
CDC42BPB-203ENST00000558867 DUOX1Q9NRD9 1551 aa20.75■□□□□ 0.91
CDC42BPB-203ENST00000558867 ATP5J2-PTCD1G3V325 749 aa20.74■□□□□ 0.91
CDC42BPB-203ENST00000558867 IRS4O14654 1257 aaPredicted RBP20.74■□□□□ 0.91
CDC42BPB-203ENST00000558867 TAF1P21675 1872 aa20.74■□□□□ 0.91
CDC42BPB-203ENST00000558867 TBC1D16Q8TBP0 767 aa20.74■□□□□ 0.91
CDC42BPB-203ENST00000558867 ZIC5Q96T25 663 aa20.74■□□□□ 0.91
CDC42BPB-203ENST00000558867 ANKIB1Q9P2G1 1089 aa20.74■□□□□ 0.91
CDC42BPB-203ENST00000558867 DDX60Q8IY21 1712 aaKnown RBP20.73■□□□□ 0.91
CDC42BPB-203ENST00000558867 FAM155AB1AL88 458 aaPredicted RBP20.73■□□□□ 0.91
CDC42BPB-203ENST00000558867 ADM5C9JUS6 153 aa20.73■□□□□ 0.91
CDC42BPB-203ENST00000558867 TRPA1O75762 1119 aa20.73■□□□□ 0.91
CDC42BPB-203ENST00000558867 VIL1P09327 827 aaKnown RBP20.73■□□□□ 0.91
CDC42BPB-203ENST00000558867 TRIM28Q13263 835 aaKnown RBP20.73■□□□□ 0.91
CDC42BPB-203ENST00000558867 ZNF428Q96B54 188 aa20.72■□□□□ 0.91
CDC42BPB-203ENST00000558867 RNF186Q9NXI6 227 aa20.72■□□□□ 0.91
CDC42BPB-203ENST00000558867 GGA3Q9NZ52 723 aa20.72■□□□□ 0.91
CDC42BPB-203ENST00000558867 PODXL2Q9NZ53 605 aa20.72■□□□□ 0.91
CDC42BPB-203ENST00000558867 GGA1Q9UJY5 639 aa20.72■□□□□ 0.91
CDC42BPB-203ENST00000558867 FKBP1BP68106 108 aa20.71■□□□□ 0.91
CDC42BPB-203ENST00000558867 GOLGA2Q08379 1002 aa20.71■□□□□ 0.91
CDC42BPB-203ENST00000558867 RTL5Q5HYW3 569 aaPredicted RBP20.71■□□□□ 0.91
CDC42BPB-203ENST00000558867 DLK2Q6UY11 383 aa20.71■□□□□ 0.91
CDC42BPB-203ENST00000558867 RIC3Q7Z5B4 369 aa20.71■□□□□ 0.91
CDC42BPB-203ENST00000558867 RUNDC1Q96C34 613 aa20.71■□□□□ 0.91
CDC42BPB-203ENST00000558867 POLR2AP24928 1970 aaKnown RBP20.7■□□□□ 0.9
CDC42BPB-203ENST00000558867 UFL1O94874 794 aa20.7■□□□□ 0.9
CDC42BPB-203ENST00000558867 EGFRP00533 1210 aa20.7■□□□□ 0.9
CDC42BPB-203ENST00000558867 SLC10A3P09131 477 aa20.7■□□□□ 0.9
CDC42BPB-203ENST00000558867 WDR43Q15061 677 aaKnown RBP eCLIP20.7■□□□□ 0.9
CDC42BPB-203ENST00000558867 KRT24Q2M2I5 525 aa20.7■□□□□ 0.9
CDC42BPB-203ENST00000558867 ZBTB38Q8NAP3 1195 aaPredicted RBP20.7■□□□□ 0.9
CDC42BPB-203ENST00000558867 AGBL3Q8NEM8 1001 aa20.7■□□□□ 0.9
CDC42BPB-203ENST00000558867 AKAP11Q9UKA4 1901 aa20.7■□□□□ 0.9
CDC42BPB-203ENST00000558867 RTL9Q8NET4 1388 aa20.7■□□□□ 0.9
CDC42BPB-203ENST00000558867 CCDC152Q4G0S7 254 aa20.69■□□□□ 0.9
CDC42BPB-203ENST00000558867 CDCA5Q96FF9 252 aa20.69■□□□□ 0.9
CDC42BPB-203ENST00000558867 CHMP4AQ9BY43 222 aa20.69■□□□□ 0.9
CDC42BPB-203ENST00000558867 KCNQ5Q9NR82 932 aa20.69■□□□□ 0.9
CDC42BPB-203ENST00000558867 RSBN1LQ6PCB5 846 aaPredicted RBP20.68■□□□□ 0.9
CDC42BPB-203ENST00000558867 CTU1Q7Z7A3 348 aaKnown RBP20.68■□□□□ 0.9
CDC42BPB-203ENST00000558867 CCDC146Q8IYE0 955 aa20.68■□□□□ 0.9
CDC42BPB-203ENST00000558867 CSRNP1Q96S65 589 aa20.68■□□□□ 0.9
CDC42BPB-203ENST00000558867 ZNF280AP59817 542 aaPredicted RBP20.67■□□□□ 0.9
CDC42BPB-203ENST00000558867 SCARF1Q14162 830 aa20.67■□□□□ 0.9
CDC42BPB-203ENST00000558867 ANGEL2Q5VTE6 544 aaKnown RBP20.67■□□□□ 0.9
CDC42BPB-203ENST00000558867 DUSP27Q5VZP5 1158 aa20.67■□□□□ 0.9
CDC42BPB-203ENST00000558867 USP17L8P0C7I0 530 aa20.66■□□□□ 0.9
CDC42BPB-203ENST00000558867 TRIM35Q9UPQ4 493 aa20.66■□□□□ 0.9
CDC42BPB-203ENST00000558867 PITPNM2Q9BZ72 1349 aa20.66■□□□□ 0.9
CDC42BPB-203ENST00000558867 PDE4DIPQ5VU43 2346 aa20.66■□□□□ 0.9
CDC42BPB-203ENST00000558867 PKN2Q16513 984 aaKnown RBP20.65■□□□□ 0.9
CDC42BPB-203ENST00000558867 PODNQ7Z5L7 613 aa20.65■□□□□ 0.9
CDC42BPB-203ENST00000558867 CCDC191Q8NCU4 936 aa20.65■□□□□ 0.9
CDC42BPB-203ENST00000558867 ZNF609O15014 1411 aa20.64■□□□□ 0.89
CDC42BPB-203ENST00000558867 XDHP47989 1333 aa20.64■□□□□ 0.89
CDC42BPB-203ENST00000558867 PDE8AO60658 829 aa20.64■□□□□ 0.89
CDC42BPB-203ENST00000558867 ATP2B4P23634 1241 aa20.64■□□□□ 0.89
CDC42BPB-203ENST00000558867 SOX10P56693 466 aa20.64■□□□□ 0.89
CDC42BPB-203ENST00000558867 CALD1Q05682 793 aaKnown RBP20.64■□□□□ 0.89
CDC42BPB-203ENST00000558867 ANKRD18AQ8IVF6 992 aa20.64■□□□□ 0.89
CDC42BPB-203ENST00000558867 MYOZ2Q9NPC6 264 aa20.64■□□□□ 0.89
CDC42BPB-203ENST00000558867 SEC31BQ9NQW1 1179 aa20.64■□□□□ 0.89
CDC42BPB-203ENST00000558867 HDAC9Q9UKV0 1011 aa20.64■□□□□ 0.89
CDC42BPB-203ENST00000558867 MYBBP1AQ9BQG0 1328 aaKnown RBP20.63■□□□□ 0.89
CDC42BPB-203ENST00000558867 USP17L3A6NCW0 530 aa20.63■□□□□ 0.89
CDC42BPB-203ENST00000558867 USP17L4A6NCW7 530 aa20.63■□□□□ 0.89
CDC42BPB-203ENST00000558867 DDX58O95786 925 aaKnown RBP20.63■□□□□ 0.89
CDC42BPB-203ENST00000558867 PCCAP05165 728 aaPredicted RBP20.63■□□□□ 0.89
CDC42BPB-203ENST00000558867 NF2P35240 595 aa20.63■□□□□ 0.89
CDC42BPB-203ENST00000558867 USP17L1Q7RTZ2 530 aa20.63■□□□□ 0.89
CDC42BPB-203ENST00000558867 RASAL3Q86YV0 1011 aa20.63■□□□□ 0.89
CDC42BPB-203ENST00000558867 CWC25Q9NXE8 425 aaPredicted RBP20.63■□□□□ 0.89
CDC42BPB-203ENST00000558867 TNRC18O15417 2968 aaPredicted RBP20.63■□□□□ 0.89
CDC42BPB-203ENST00000558867 OGFOD1Q8N543 542 aa20.62■□□□□ 0.89
CDC42BPB-203ENST00000558867 MYD88Q99836 296 aa20.62■□□□□ 0.89
CDC42BPB-203ENST00000558867 MMP14P50281 582 aa20.61■□□□□ 0.89
CDC42BPB-203ENST00000558867 TTLL12Q14166 644 aaPredicted RBP20.61■□□□□ 0.89
CDC42BPB-203ENST00000558867 CDC5LQ99459 802 aaKnown RBP20.61■□□□□ 0.89
CDC42BPB-203ENST00000558867 ASTN2O75129 1339 aaPredicted RBP20.6■□□□□ 0.89
CDC42BPB-203ENST00000558867 PAPPA2Q9BXP8 1791 aa20.6■□□□□ 0.89
CDC42BPB-203ENST00000558867 MBIPQ9NS73 344 aa20.6■□□□□ 0.89
CDC42BPB-203ENST00000558867 SCN9AQ15858 1988 aa20.59■□□□□ 0.89
CDC42BPB-203ENST00000558867 GNAI1P63096 354 aa20.59■□□□□ 0.89
CDC42BPB-203ENST00000558867 MYO3BQ8WXR4 1341 aa20.58■□□□□ 0.89
CDC42BPB-203ENST00000558867 PRPF38BQ5VTL8 546 aaKnown RBP20.58■□□□□ 0.89
CDC42BPB-203ENST00000558867 YTHDC1Q96MU7 727 aaKnown RBP20.58■□□□□ 0.89
CDC42BPB-203ENST00000558867 CCDC85AQ96PX6 553 aaPredicted RBP20.58■□□□□ 0.89
CDC42BPB-203ENST00000558867 GMLQ99445 158 aa20.58■□□□□ 0.89
CDC42BPB-203ENST00000558867 SREBF2Q12772 1141 aa20.57■□□□□ 0.88
CDC42BPB-203ENST00000558867 METTL22Q9BUU2 404 aaPredicted RBP20.57■□□□□ 0.88
CDC42BPB-203ENST00000558867 PHAXQ9H814 394 aaKnown RBP20.57■□□□□ 0.88
CDC42BPB-203ENST00000558867 IFT57Q9NWB7 429 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms