RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 DPEP1P16444 411 aa11.92□□□□□ -0.5
CUX1-216ENST00000558469 ALDH1B1P30837 517 aa11.92□□□□□ -0.5
CUX1-216ENST00000558469 IGHMBP2P38935 993 aaKnown RBP11.92□□□□□ -0.5
CUX1-216ENST00000558469 TGFB2P61812 414 aa11.92□□□□□ -0.5
CUX1-216ENST00000558469 RPS8P62241 208 aaKnown RBP11.92□□□□□ -0.5
CUX1-216ENST00000558469 OS9Q13438 667 aaPredicted RBP11.92□□□□□ -0.5
CUX1-216ENST00000558469 STYK1Q6J9G0 422 aa11.92□□□□□ -0.5
CUX1-216ENST00000558469 LDHAL6AQ6ZMR3 332 aa11.92□□□□□ -0.5
CUX1-216ENST00000558469 CRAMP1Q96RY5 1269 aa11.92□□□□□ -0.5
CUX1-216ENST00000558469 MPHOSPH8Q99549 860 aa11.92□□□□□ -0.5
CUX1-216ENST00000558469 PUS3Q9BZE2 481 aaKnown RBP11.92□□□□□ -0.5
CUX1-216ENST00000558469 DCTPP1Q9H773 170 aa11.92□□□□□ -0.5
CUX1-216ENST00000558469 EXOC6BQ9Y2D4 811 aa11.92□□□□□ -0.5
CUX1-216ENST00000558469 LRP5O75197 1615 aa11.91□□□□□ -0.5
CUX1-216ENST00000558469 APBB1O00213 710 aa11.91□□□□□ -0.5
CUX1-216ENST00000558469 G3BP1Q13283 466 aaKnown RBP eCLIP11.91□□□□□ -0.5
CUX1-216ENST00000558469 GRAPQ13588 217 aa11.91□□□□□ -0.5
CUX1-216ENST00000558469 LRRC24Q50LG9 513 aa11.91□□□□□ -0.5
CUX1-216ENST00000558469 GRAPLQ8TC17 118 aaPredicted RBP11.91□□□□□ -0.5
CUX1-216ENST00000558469 CNNM1Q9NRU3 951 aa11.91□□□□□ -0.5
CUX1-216ENST00000558469 NOP58Q9Y2X3 529 aaKnown RBP11.91□□□□□ -0.5
CUX1-216ENST00000558469 LRRC37AA6NMS7 1700 aa11.9□□□□□ -0.5
CUX1-216ENST00000558469 EYA2O00167 538 aa11.9□□□□□ -0.5
CUX1-216ENST00000558469 BBOX1O75936 387 aa11.9□□□□□ -0.5
CUX1-216ENST00000558469 KCNA3P22001 575 aa11.9□□□□□ -0.5
CUX1-216ENST00000558469 HSP90AB4PQ58FF6 505 aa11.9□□□□□ -0.5
CUX1-216ENST00000558469 CNKSR1Q969H4 720 aa11.9□□□□□ -0.5
CUX1-216ENST00000558469 GCC1Q96CN9 775 aa11.9□□□□□ -0.5
CUX1-216ENST00000558469 FHDC1Q9C0D6 1143 aaPredicted RBP11.9□□□□□ -0.5
CUX1-216ENST00000558469 BSDC1Q9NW68 430 aaPredicted RBP11.9□□□□□ -0.5
CUX1-216ENST00000558469 ARFGEF1Q9Y6D6 1849 aa11.89□□□□□ -0.51
CUX1-216ENST00000558469 PPEF1O14829 653 aaPredicted RBP11.89□□□□□ -0.51
CUX1-216ENST00000558469 CIAO1O76071 339 aa11.89□□□□□ -0.51
CUX1-216ENST00000558469 IL15P40933 162 aaPredicted RBP11.89□□□□□ -0.51
CUX1-216ENST00000558469 CENPQQ7L2Z9 268 aaPredicted RBP11.89□□□□□ -0.51
CUX1-216ENST00000558469 ATG9AQ7Z3C6 839 aa11.89□□□□□ -0.51
CUX1-216ENST00000558469 NLGN2Q8NFZ4 835 aa11.89□□□□□ -0.51
CUX1-216ENST00000558469 BCL11AQ9H165 835 aa11.89□□□□□ -0.51
CUX1-216ENST00000558469 PIM2Q9P1W9 311 aa11.89□□□□□ -0.51
CUX1-216ENST00000558469 FBXO3Q9UK99 471 aa11.89□□□□□ -0.51
CUX1-216ENST00000558469 RIPOR2Q9Y4F9 1068 aa11.89□□□□□ -0.51
CUX1-216ENST00000558469 KDM2BQ8NHM5 1336 aa11.88□□□□□ -0.51
CUX1-216ENST00000558469 RAB11FIP3O75154 756 aa11.88□□□□□ -0.51
CUX1-216ENST00000558469 SASH1O94885 1247 aa11.88□□□□□ -0.51
CUX1-216ENST00000558469 METTL24Q5JXM2 366 aa11.88□□□□□ -0.51
CUX1-216ENST00000558469 PRPF40BQ6NWY9 871 aaKnown RBP11.88□□□□□ -0.51
CUX1-216ENST00000558469 ERC1Q8IUD2 1116 aa11.88□□□□□ -0.51
CUX1-216ENST00000558469 SMC5Q8IY18 1101 aa11.88□□□□□ -0.51
CUX1-216ENST00000558469 TTLL6Q8N841 843 aa11.88□□□□□ -0.51
CUX1-216ENST00000558469 HELBQ8NG08 1087 aaPredicted RBP11.88□□□□□ -0.51
CUX1-216ENST00000558469 MINPP1Q9UNW1 487 aa11.88□□□□□ -0.51
CUX1-216ENST00000558469 MROH5Q6ZUA9 1318 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 SMARCA5O60264 1052 aaPredicted RBP11.87□□□□□ -0.51
CUX1-216ENST00000558469 CHRNDQ07001 517 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 TFCP2Q12800 502 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 ANKRD45Q5TZF3 282 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 TMC4Q7Z404 712 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 SLC51AQ86UW1 340 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 SP8Q8IXZ3 490 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 RHPN1Q8TCX5 695 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 LRRCC1Q9C099 1032 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 CEP126Q9P2H0 1117 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 WWC3Q9ULE0 1092 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 CCDC88AQ3V6T2 1871 aa11.87□□□□□ -0.51
CUX1-216ENST00000558469 ARAP2Q8WZ64 1704 aa11.86□□□□□ -0.51
CUX1-216ENST00000558469 TAF5LO75529 589 aa11.86□□□□□ -0.51
CUX1-216ENST00000558469 DALRD3Q5D0E6 543 aaKnown RBP11.86□□□□□ -0.51
CUX1-216ENST00000558469 OLFM4Q6UX06 510 aa11.86□□□□□ -0.51
CUX1-216ENST00000558469 KIF1BPQ96EK5 621 aa11.86□□□□□ -0.51
CUX1-216ENST00000558469 SYT17Q9BSW7 474 aa11.86□□□□□ -0.51
CUX1-216ENST00000558469 TMX4Q9H1E5 349 aaPredicted RBP11.86□□□□□ -0.51
CUX1-216ENST00000558469 IL1RAPL2Q9NP60 686 aa11.86□□□□□ -0.51
CUX1-216ENST00000558469 ANKIB1Q9P2G1 1089 aa11.86□□□□□ -0.51
CUX1-216ENST00000558469 ZBTB47Q9UFB7 747 aaPredicted RBP11.86□□□□□ -0.51
CUX1-216ENST00000558469 ATP6V0A2Q9Y487 856 aa11.86□□□□□ -0.51
CUX1-216ENST00000558469 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.86□□□□□ -0.51
CUX1-216ENST00000558469 LTBP1Q14766 1721 aa11.86□□□□□ -0.51
CUX1-216ENST00000558469 FER1L6Q2WGJ9 1857 aa11.85□□□□□ -0.51
CUX1-216ENST00000558469 C21orf2O43822 256 aa11.85□□□□□ -0.51
CUX1-216ENST00000558469 PDE8BO95263 885 aa11.85□□□□□ -0.51
CUX1-216ENST00000558469 NUCB1Q02818 461 aa11.85□□□□□ -0.51
CUX1-216ENST00000558469 ANKRD2Q9GZV1 360 aa11.85□□□□□ -0.51
CUX1-216ENST00000558469 MYH13Q9UKX3 1938 aa11.85□□□□□ -0.51
CUX1-216ENST00000558469 GPSM2P81274 684 aa11.84□□□□□ -0.51
CUX1-216ENST00000558469 CHD1LQ86WJ1 897 aa11.84□□□□□ -0.51
CUX1-216ENST00000558469 VGLL2Q8N8G2 317 aa11.84□□□□□ -0.51
CUX1-216ENST00000558469 SPDYE1Q8NFV5 336 aaPredicted RBP11.84□□□□□ -0.51
CUX1-216ENST00000558469 NSFL1CQ9UNZ2 370 aaKnown RBP11.84□□□□□ -0.51
CUX1-216ENST00000558469 CLEC11AQ9Y240 323 aa11.84□□□□□ -0.51
CUX1-216ENST00000558469 BCS1LQ9Y276 419 aa11.84□□□□□ -0.51
CUX1-216ENST00000558469 AKAP2Q9Y2D5 859 aa11.84□□□□□ -0.51
CUX1-216ENST00000558469 XDHP47989 1333 aa11.84□□□□□ -0.51
CUX1-216ENST00000558469 WTIPA6NIX2 430 aaPredicted RBP11.83□□□□□ -0.52
CUX1-216ENST00000558469 SNAP23O00161 211 aa11.83□□□□□ -0.52
CUX1-216ENST00000558469 KCNJ4P48050 445 aa11.83□□□□□ -0.52
CUX1-216ENST00000558469 TIMM10P62072 90 aa11.83□□□□□ -0.52
CUX1-216ENST00000558469 ATP2B3Q16720 1220 aa11.83□□□□□ -0.52
CUX1-216ENST00000558469 TNNI3KQ59H18 835 aa11.83□□□□□ -0.52
CUX1-216ENST00000558469 CLASRPQ8N2M8 674 aaKnown RBP11.83□□□□□ -0.52
CUX1-216ENST00000558469 MPNDQ8N594 471 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms