RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CARD10Q9BWT7 1032 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 GPR108Q9NPR9 543 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 LETM1O95202 739 aaPredicted RBP8.68□□□□□ -1.02
VPS13C-206ENST00000558338 IL2RBP14784 551 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 TSGA10IPQ3SY00 556 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 HS1BP3Q53T59 392 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 EPHA10Q5JZY3 1008 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 BLOC1S2Q6QNY1 142 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 BOLA2Q9H3K6 86 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 RRAGDQ9NQL2 400 aaPredicted RBP8.68□□□□□ -1.02
VPS13C-206ENST00000558338 CWC25Q9NXE8 425 aaPredicted RBP8.68□□□□□ -1.02
VPS13C-206ENST00000558338 NHSL1Q5SYE7 1610 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 ESPNB1AK53 854 aa8.67□□□□□ -1.02
VPS13C-206ENST00000558338 SLC27A2O14975 620 aa8.67□□□□□ -1.02
VPS13C-206ENST00000558338 F13A1P00488 732 aa8.67□□□□□ -1.02
VPS13C-206ENST00000558338 PDCP20941 246 aa8.67□□□□□ -1.02
VPS13C-206ENST00000558338 CASP7P55210 303 aa8.67□□□□□ -1.02
VPS13C-206ENST00000558338 CCDC191Q8NCU4 936 aa8.67□□□□□ -1.02
VPS13C-206ENST00000558338 FAM227BQ96M60 508 aa8.67□□□□□ -1.02
VPS13C-206ENST00000558338 ATG3Q9NT62 314 aa8.67□□□□□ -1.02
VPS13C-206ENST00000558338 TLR7Q9NYK1 1049 aaKnown RBP8.67□□□□□ -1.02
VPS13C-206ENST00000558338 PALLDQ8WX93 1383 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 A0A0D9SFI3 127 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 H7C1W4 665 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 TFCP2Q12800 502 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 IER5LQ5T953 404 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 TMCO4Q5TGY1 634 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 HAUS7Q99871 368 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 TMEM63CQ9P1W3 806 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 SH3TC1Q8TE82 1336 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 CIAO1O76071 339 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 SYT1P21579 422 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 RPS6KB1P23443 525 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 GJB2P29033 226 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 IL15P40933 162 aaPredicted RBP8.66□□□□□ -1.02
VPS13C-206ENST00000558338 UBE2HP62256 183 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 LRRFIP1Q32MZ4 808 aaKnown RBP8.66□□□□□ -1.02
VPS13C-206ENST00000558338 CCDC183Q5T5S1 534 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 USPL1Q5W0Q7 1092 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 CCDC83Q8IWF9 413 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 FAM184AQ8NB25 1140 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 TEX13AQ9BXU3 409 aaPredicted RBP8.66□□□□□ -1.02
VPS13C-206ENST00000558338 TSPY26PQ9H489 355 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 RBM27Q9P2N5 1060 aaKnown RBP8.66□□□□□ -1.02
VPS13C-206ENST00000558338 DBNLQ9UJU6 430 aaKnown RBP8.66□□□□□ -1.02
VPS13C-206ENST00000558338 STRCQ7RTU9 1775 aa8.66□□□□□ -1.02
VPS13C-206ENST00000558338 ZNF609O15014 1411 aa8.65□□□□□ -1.02
VPS13C-206ENST00000558338 SYCE3A1L190 88 aa8.65□□□□□ -1.02
VPS13C-206ENST00000558338 ZMYND10O75800 440 aa8.65□□□□□ -1.02
VPS13C-206ENST00000558338 PRIM1P49642 420 aaKnown RBP8.65□□□□□ -1.02
VPS13C-206ENST00000558338 ADCK5Q3MIX3 580 aa8.65□□□□□ -1.02
VPS13C-206ENST00000558338 KLHDC4Q8TBB5 520 aa8.65□□□□□ -1.02
VPS13C-206ENST00000558338 TOGARAM1Q9Y4F4 1720 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 PLCH1Q4KWH8 1693 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 LRP6O75581 1613 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 NBPF26B4DH59 902 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 ATP5J2-PTCD1G3V325 749 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 PTCD1O75127 700 aaKnown RBP8.64□□□□□ -1.03
VPS13C-206ENST00000558338 TAF5LO75529 589 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 FOXO4P98177 505 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 MCMDC2Q4G0Z9 681 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 NBPF14Q5TI25 921 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 NBPF10Q6P3W6 841 aaKnown RBP8.64□□□□□ -1.03
VPS13C-206ENST00000558338 LMBR1LQ6UX01 489 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 USP48Q86UV5 1035 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 NBPF15Q8N660 670 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 KBTBD3Q8NAB2 608 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS13C-206ENST00000558338 CHMP4CQ96CF2 233 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 PDLIM2Q96JY6 352 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 RBSNQ9H1K0 784 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 CHMP3Q9Y3E7 222 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 ME3Q16798 604 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 UVSSAQ2YD98 709 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 ZSCAN30Q86W11 494 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 DBNDD2Q9BQY9 259 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 HELLSQ9NRZ9 838 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 SLAIN2Q9P270 581 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 MTMR6Q9Y217 621 aa8.64□□□□□ -1.03
VPS13C-206ENST00000558338 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.64□□□□□ -1.03
VPS13C-206ENST00000558338 ABCC12Q96J65 1359 aa8.63□□□□□ -1.03
VPS13C-206ENST00000558338 EYA2O00167 538 aa8.63□□□□□ -1.03
VPS13C-206ENST00000558338 LARGE1O95461 756 aa8.63□□□□□ -1.03
VPS13C-206ENST00000558338 MSNP26038 577 aaKnown RBP8.63□□□□□ -1.03
VPS13C-206ENST00000558338 PIP4K2AP48426 406 aaPredicted RBP8.63□□□□□ -1.03
VPS13C-206ENST00000558338 EVA1CP58658 441 aa8.63□□□□□ -1.03
VPS13C-206ENST00000558338 KIF6Q6ZMV9 814 aa8.63□□□□□ -1.03
VPS13C-206ENST00000558338 DNAJC2Q99543 621 aaKnown RBP8.63□□□□□ -1.03
VPS13C-206ENST00000558338 TMOD3Q9NYL9 352 aa8.63□□□□□ -1.03
VPS13C-206ENST00000558338 COL14A1Q05707 1796 aaKnown RBP8.63□□□□□ -1.03
VPS13C-206ENST00000558338 CPA1P15085 419 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 MCM5P33992 734 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 KRT85P78386 507 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 TRIM28Q13263 835 aaKnown RBP8.62□□□□□ -1.03
VPS13C-206ENST00000558338 TTLL7Q6ZT98 887 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 ZNF589Q86UQ0 364 aaPredicted RBP8.62□□□□□ -1.03
VPS13C-206ENST00000558338 DHX37Q8IY37 1157 aaKnown RBP8.62□□□□□ -1.03
VPS13C-206ENST00000558338 NEK1Q96PY6 1258 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 ISCA1Q9BUE6 129 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 DSCC1Q9BVC3 393 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms