RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 ZMYM1Q5SVZ6 1142 aa8.75□□□□□ -1.01
VRK1-207ENST00000557352 DTWD1Q8N5C7 304 aa8.75□□□□□ -1.01
VRK1-207ENST00000557352 PLD4Q96BZ4 506 aa8.75□□□□□ -1.01
VRK1-207ENST00000557352 TMEM88BA6NKF7 163 aa8.74□□□□□ -1.01
VRK1-207ENST00000557352 GHRHP01286 108 aa8.74□□□□□ -1.01
VRK1-207ENST00000557352 SCNN1AP37088 669 aa8.74□□□□□ -1.01
VRK1-207ENST00000557352 TXNRD3Q86VQ6 643 aa8.74□□□□□ -1.01
VRK1-207ENST00000557352 FBXO11Q86XK2 927 aa8.74□□□□□ -1.01
VRK1-207ENST00000557352 OR13H1Q8NG92 308 aa8.74□□□□□ -1.01
VRK1-207ENST00000557352 FNDC3AQ9Y2H6 1198 aaKnown RBP8.74□□□□□ -1.01
VRK1-207ENST00000557352 NRG1Q02297 640 aaPredicted RBP8.73□□□□□ -1.01
VRK1-207ENST00000557352 C14orf37Q86TY3 774 aa8.72□□□□□ -1.01
VRK1-207ENST00000557352 RBSNQ9H1K0 784 aa8.72□□□□□ -1.01
VRK1-207ENST00000557352 DEAF1O75398 565 aaPredicted RBP8.71□□□□□ -1.02
VRK1-207ENST00000557352 H2AFB1P0C5Y9 115 aa8.71□□□□□ -1.02
VRK1-207ENST00000557352 H2AFB2P0C5Z0 115 aa8.71□□□□□ -1.02
VRK1-207ENST00000557352 SSFA2P28290 1259 aa8.71□□□□□ -1.02
VRK1-207ENST00000557352 PRSS36Q5K4E3 855 aa8.71□□□□□ -1.02
VRK1-207ENST00000557352 COL13A1Q5TAT6 717 aaPredicted RBP8.71□□□□□ -1.02
VRK1-207ENST00000557352 GDF6Q6KF10 455 aaPredicted RBP8.71□□□□□ -1.02
VRK1-207ENST00000557352 ATCAYQ86WG3 371 aa8.71□□□□□ -1.02
VRK1-207ENST00000557352 HELQQ8TDG4 1101 aa8.71□□□□□ -1.02
VRK1-207ENST00000557352 SSBP4Q9BWG4 385 aaPredicted RBP8.71□□□□□ -1.02
VRK1-207ENST00000557352 USP21Q9UK80 565 aa8.71□□□□□ -1.02
VRK1-207ENST00000557352 TTC39BQ5VTQ0 682 aaPredicted RBP8.7□□□□□ -1.02
VRK1-207ENST00000557352 IL22RA1Q8N6P7 574 aa8.7□□□□□ -1.02
VRK1-207ENST00000557352 NUDT16Q96DE0 195 aaKnown RBP8.7□□□□□ -1.02
VRK1-207ENST00000557352 HYAL2Q12891 473 aa8.69□□□□□ -1.02
VRK1-207ENST00000557352 ABI2Q9NYB9 513 aaPredicted RBP8.69□□□□□ -1.02
VRK1-207ENST00000557352 TRIM33Q9UPN9 1127 aa8.69□□□□□ -1.02
VRK1-207ENST00000557352 PDE12Q6L8Q7 609 aaKnown RBP8.68□□□□□ -1.02
VRK1-207ENST00000557352 IGF2-ASQ6U949 168 aa8.68□□□□□ -1.02
VRK1-207ENST00000557352 GTF3C2Q8WUA4 911 aaPredicted RBP8.68□□□□□ -1.02
VRK1-207ENST00000557352 DLL1O00548 723 aa8.67□□□□□ -1.02
VRK1-207ENST00000557352 CYP2E1P05181 493 aaPredicted RBP8.67□□□□□ -1.02
VRK1-207ENST00000557352 NOM1Q5C9Z4 860 aaKnown RBP8.67□□□□□ -1.02
VRK1-207ENST00000557352 EDEM1Q92611 657 aa8.67□□□□□ -1.02
VRK1-207ENST00000557352 ELP3Q9H9T3 547 aa8.67□□□□□ -1.02
VRK1-207ENST00000557352 TMEM63CQ9P1W3 806 aa8.67□□□□□ -1.02
VRK1-207ENST00000557352 CARNS1A5YM72 827 aa8.66□□□□□ -1.02
VRK1-207ENST00000557352 KIF4AO95239 1232 aa8.66□□□□□ -1.02
VRK1-207ENST00000557352 MPSTP25325 297 aa8.66□□□□□ -1.02
VRK1-207ENST00000557352 ATP11AP98196 1134 aa8.66□□□□□ -1.02
VRK1-207ENST00000557352 ZNF438Q7Z4V0 828 aa8.66□□□□□ -1.02
VRK1-207ENST00000557352 WFDC12Q8WWY7 111 aa8.66□□□□□ -1.02
VRK1-207ENST00000557352 TP53INP1Q96A56 240 aa8.66□□□□□ -1.02
VRK1-207ENST00000557352 SPACA7Q96KW9 195 aa8.66□□□□□ -1.02
VRK1-207ENST00000557352 RPLP1P05386 114 aaKnown RBP8.65□□□□□ -1.02
VRK1-207ENST00000557352 NOS3P29474 1203 aa8.65□□□□□ -1.02
VRK1-207ENST00000557352 EIF1AXP47813 144 aaKnown RBP8.65□□□□□ -1.02
VRK1-207ENST00000557352 IREB2P48200 963 aaKnown RBP8.65□□□□□ -1.02
VRK1-207ENST00000557352 DNM1Q05193 864 aaKnown RBP8.65□□□□□ -1.02
VRK1-207ENST00000557352 MTMR3Q13615 1198 aa8.65□□□□□ -1.02
VRK1-207ENST00000557352 PHLDB3Q6NSJ2 640 aa8.65□□□□□ -1.02
VRK1-207ENST00000557352 CACTIN-AS1Q8N1I8 211 aa8.65□□□□□ -1.02
VRK1-207ENST00000557352 PDGFAP04085 211 aa8.64□□□□□ -1.03
VRK1-207ENST00000557352 SETDB1Q15047 1291 aa8.64□□□□□ -1.03
VRK1-207ENST00000557352 CEP135Q66GS9 1140 aa8.64□□□□□ -1.03
VRK1-207ENST00000557352 XKR5Q6UX68 686 aa8.64□□□□□ -1.03
VRK1-207ENST00000557352 RASSF4Q9H2L5 321 aa8.64□□□□□ -1.03
VRK1-207ENST00000557352 GGNBP2Q9H3C7 697 aa8.64□□□□□ -1.03
VRK1-207ENST00000557352 SRA1Q9HD15 236 aaKnown RBP8.64□□□□□ -1.03
VRK1-207ENST00000557352 CNTN3Q9P232 1028 aa8.64□□□□□ -1.03
VRK1-207ENST00000557352 PPME1Q9Y570 386 aa8.64□□□□□ -1.03
VRK1-207ENST00000557352 SMNDC1O75940 238 aaKnown RBP eCLIP8.63□□□□□ -1.03
VRK1-207ENST00000557352 MZF1P28698 734 aaPredicted RBP8.63□□□□□ -1.03
VRK1-207ENST00000557352 ARTNQ5T4W7 220 aa8.63□□□□□ -1.03
VRK1-207ENST00000557352 NCAPG2Q86XI2 1143 aa8.63□□□□□ -1.03
VRK1-207ENST00000557352 MAP4K3Q8IVH8 894 aa8.63□□□□□ -1.03
VRK1-207ENST00000557352 CEP120Q8N960 986 aa8.63□□□□□ -1.03
VRK1-207ENST00000557352 MUC3BQ9H195 1237 aa8.63□□□□□ -1.03
VRK1-207ENST00000557352 SCO2A0A1W2PP80 73 aa8.62□□□□□ -1.03
VRK1-207ENST00000557352 A6NHS1 94 aa8.62□□□□□ -1.03
VRK1-207ENST00000557352 PCSK2P16519 638 aa8.62□□□□□ -1.03
VRK1-207ENST00000557352 NPR3P17342 541 aa8.62□□□□□ -1.03
VRK1-207ENST00000557352 ADAMTSL4Q6UY14 1074 aa8.62□□□□□ -1.03
VRK1-207ENST00000557352 MEGF10Q96KG7 1140 aa8.62□□□□□ -1.03
VRK1-207ENST00000557352 PBX4Q9BYU1 374 aa8.62□□□□□ -1.03
VRK1-207ENST00000557352 LACRTQ9GZZ8 138 aa8.62□□□□□ -1.03
VRK1-207ENST00000557352 KANSL3Q9P2N6 904 aa8.62□□□□□ -1.03
VRK1-207ENST00000557352 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.62□□□□□ -1.03
VRK1-207ENST00000557352 C8orf34Q49A92 452 aa8.61□□□□□ -1.03
VRK1-207ENST00000557352 ALKBH2Q6NS38 261 aa8.61□□□□□ -1.03
VRK1-207ENST00000557352 C1orf127Q8N9H9 656 aa8.61□□□□□ -1.03
VRK1-207ENST00000557352 KRTAP4-8Q9BYQ9 185 aa8.61□□□□□ -1.03
VRK1-207ENST00000557352 MRPL18Q9H0U6 180 aaKnown RBP8.61□□□□□ -1.03
VRK1-207ENST00000557352 LINC01387J3KSC0 135 aa8.6□□□□□ -1.03
VRK1-207ENST00000557352 CDC27P30260 824 aa8.6□□□□□ -1.03
VRK1-207ENST00000557352 TMEM130Q8N3G9 435 aa8.6□□□□□ -1.03
VRK1-207ENST00000557352 GALNT11Q8NCW6 608 aa8.6□□□□□ -1.03
VRK1-207ENST00000557352 TTC16Q8NEE8 873 aa8.6□□□□□ -1.03
VRK1-207ENST00000557352 AKTIPQ9H8T0 292 aa8.6□□□□□ -1.03
VRK1-207ENST00000557352 ZFP64Q9NPA5 681 aa8.6□□□□□ -1.03
VRK1-207ENST00000557352 SALL4Q9UJQ4 1053 aa8.6□□□□□ -1.03
VRK1-207ENST00000557352 POLIQ9UNA4 740 aa8.6□□□□□ -1.03
VRK1-207ENST00000557352 ALX3O95076 343 aa8.59□□□□□ -1.03
VRK1-207ENST00000557352 CES1P23141 567 aa8.59□□□□□ -1.03
VRK1-207ENST00000557352 TXNDC11Q6PKC3 985 aa8.59□□□□□ -1.03
VRK1-207ENST00000557352 DCAF11Q8TEB1 546 aa8.59□□□□□ -1.03
VRK1-207ENST00000557352 POP1Q99575 1024 aaKnown RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms