RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	RNF123	Q5XPI4	1314 aa		11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	WTIP	A6NIX2	430 aa	Predicted RBP	11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	GRM8	O00222	908 aa		11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	PLIN1	O60240	522 aa		11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	ALDH1B1	P30837	517 aa		11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	SUCLG2	Q96I99	432 aa		11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	USP44	Q9H0E7	712 aa		11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	GREM2	Q9H772	168 aa		11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	C9orf78	Q9NZ63	289 aa	Predicted RBP	11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	PDZRN3	Q9UPQ7	1066 aa		11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	AFDN	P55196	1824 aa	Known RBP	11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.16	□□□□□ -0.62
PRKCH-222	ENST00000556778	CDHR2	Q9BYE9	1310 aa		11.15	□□□□□ -0.62
PRKCH-222	ENST00000556778	PPEF1	O14829	653 aa	Predicted RBP	11.15	□□□□□ -0.62
PRKCH-222	ENST00000556778	ALDH1L1	O75891	902 aa		11.15	□□□□□ -0.62
PRKCH-222	ENST00000556778	RLBP1	P12271	317 aa		11.15	□□□□□ -0.62
PRKCH-222	ENST00000556778	CTSW	P56202	376 aa		11.15	□□□□□ -0.62
PRKCH-222	ENST00000556778	DDX46	Q7L014	1031 aa	Known RBP	11.15	□□□□□ -0.62
PRKCH-222	ENST00000556778	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.15	□□□□□ -0.62
PRKCH-222	ENST00000556778	API5	Q9BZZ5	524 aa	Known RBP	11.15	□□□□□ -0.62
PRKCH-222	ENST00000556778	COL4A1	P02462	1669 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	NUP98	P52948	1817 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	CSF1R	P07333	972 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	GRAP	Q13588	217 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	ZKSCAN2	Q63HK3	967 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	ATF7IP	Q6VMQ6	1270 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	TMEM57	Q8N5G2	664 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	GRAPL	Q8TC17	118 aa	Predicted RBP	11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	ARHGAP45	Q92619	1136 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	RCAN3	Q9UKA8	241 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	BOLA1	Q9Y3E2	137 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	RIC1	Q4ADV7	1423 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	ANKRD31	Q8N7Z5	1873 aa		11.14	□□□□□ -0.63
PRKCH-222	ENST00000556778	BBOX1	O75936	387 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	RPS8	P62241	208 aa	Known RBP	11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	FAM161A	Q3B820	660 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	CCDC152	Q4G0S7	254 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	C9orf131	Q5VYM1	1079 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	LMBR1L	Q6UX01	489 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	PANK1	Q8TE04	598 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	ZNF594	Q96JF6	807 aa	Predicted RBP	11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	MEIS3	Q99687	375 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	PLA2G12B	Q9BX93	195 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	ATP6V0A2	Q9Y487	856 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	KIF13B	Q9NQT8	1826 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	ARFGEF2	Q9Y6D5	1785 aa		11.13	□□□□□ -0.63
PRKCH-222	ENST00000556778	COL11A2	P13942	1736 aa	Predicted RBP	11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	UTY	O14607	1347 aa		11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	KIF16B	Q96L93	1317 aa		11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	IPO8	O15397	1037 aa	Known RBP	11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	YY1	P25490	414 aa		11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	CCT4	P50991	539 aa	Known RBP	11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	GPSM2	P81274	684 aa		11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	C20orf194	Q5TEA3	1177 aa		11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	INTS3	Q68E01	1043 aa	Known RBP	11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	SP8	Q8IXZ3	490 aa		11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	ANKRD44	Q8N8A2	993 aa		11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	GPR101	Q96P66	508 aa	Predicted RBP	11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	BICC1	Q9H694	974 aa	Known RBP	11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	CHMP3	Q9Y3E7	222 aa		11.12	□□□□□ -0.63
PRKCH-222	ENST00000556778	ITGA6	P23229	1130 aa		11.11	□□□□□ -0.63
PRKCH-222	ENST00000556778	CCDC93	Q567U6	631 aa		11.11	□□□□□ -0.63
PRKCH-222	ENST00000556778	KLHDC4	Q8TBB5	520 aa		11.11	□□□□□ -0.63
PRKCH-222	ENST00000556778	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.11	□□□□□ -0.63
PRKCH-222	ENST00000556778	RNF181	Q9P0P0	153 aa		11.11	□□□□□ -0.63
PRKCH-222	ENST00000556778	MICALL2	Q8IY33	904 aa		11.1	□□□□□ -0.63
PRKCH-222	ENST00000556778	ZNF526	Q8TF50	670 aa	Predicted RBP	11.1	□□□□□ -0.63
PRKCH-222	ENST00000556778	TAOK3	Q9H2K8	898 aa		11.1	□□□□□ -0.63
PRKCH-222	ENST00000556778	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.1	□□□□□ -0.63
PRKCH-222	ENST00000556778	SNED1	Q8TER0	1413 aa		11.09	□□□□□ -0.63
PRKCH-222	ENST00000556778	SNAP23	O00161	211 aa		11.09	□□□□□ -0.63
PRKCH-222	ENST00000556778	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
PRKCH-222	ENST00000556778	ANKRD18A	Q8IVF6	992 aa		11.09	□□□□□ -0.63
PRKCH-222	ENST00000556778	DZIP1L	Q8IYY4	767 aa	Known RBP	11.09	□□□□□ -0.63
PRKCH-222	ENST00000556778	RTKN2	Q8IZC4	609 aa		11.09	□□□□□ -0.63
PRKCH-222	ENST00000556778	PUS3	Q9BZE2	481 aa	Known RBP	11.09	□□□□□ -0.63
PRKCH-222	ENST00000556778	POLL	Q9UGP5	575 aa		11.09	□□□□□ -0.63
PRKCH-222	ENST00000556778	MINPP1	Q9UNW1	487 aa		11.09	□□□□□ -0.63
PRKCH-222	ENST00000556778	LRRFIP2	Q9Y608	721 aa	Known RBP	11.09	□□□□□ -0.63
PRKCH-222	ENST00000556778	SLX4	Q8IY92	1834 aa		11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	ANKRD18B	A2A2Z9	1011 aa		11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	RIMBP2	O15034	1052 aa		11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	ZBTB7B	O15156	539 aa	Predicted RBP	11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	UBTFL1	P0CB47	393 aa	Predicted RBP	11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	HSP90B1	P14625	803 aa	Known RBP	11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	LMNB1	P20700	586 aa		11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	IFIT5	Q13325	482 aa	Known RBP	11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	RABL6	Q3YEC7	729 aa	Predicted RBP	11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	DPP8	Q6V1X1	898 aa	Predicted RBP	11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	MPND	Q8N594	471 aa		11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	SLAIN1	Q8ND83	568 aa		11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	HELB	Q8NG08	1087 aa	Predicted RBP	11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	C1orf115	Q9H7X2	142 aa		11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.08	□□□□□ -0.64
PRKCH-222	ENST00000556778	TAF5L	O75529	589 aa		11.07	□□□□□ -0.64
PRKCH-222	ENST00000556778	AOC3	Q16853	763 aa		11.07	□□□□□ -0.64
PRKCH-222	ENST00000556778	CCDC57	Q2TAC2	916 aa		11.07	□□□□□ -0.64
PRKCH-222	ENST00000556778	SOGA3	Q5TF21	947 aa		11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms