RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 PHF20L1A8MW92 1017 aa8.37□□□□□ -1.07
SCFD1-221ENST00000556534 PHACTR2O75167 634 aa8.37□□□□□ -1.07
SCFD1-221ENST00000556534 MARSP56192 900 aaKnown RBP8.37□□□□□ -1.07
SCFD1-221ENST00000556534 PERM1Q5SV97 790 aa8.37□□□□□ -1.07
SCFD1-221ENST00000556534 PSAPL1Q6NUJ1 521 aa8.37□□□□□ -1.07
SCFD1-221ENST00000556534 HFE2Q6ZVN8 426 aa8.37□□□□□ -1.07
SCFD1-221ENST00000556534 MICALL1Q8N3F8 863 aa8.37□□□□□ -1.07
SCFD1-221ENST00000556534 DMRTB1Q96MA1 342 aa8.37□□□□□ -1.07
SCFD1-221ENST00000556534 LOC102724428A0A0B4J2F2 783 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 J3QW42 95 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 M0R082 166 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 EREGO14944 169 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 EIF2AK2P19525 551 aaKnown RBP8.36□□□□□ -1.07
SCFD1-221ENST00000556534 SIK1P57059 783 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 HYAL2Q12891 473 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 ORC1Q13415 861 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 ZNF417Q8TAU3 575 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 ASB16Q96NS5 453 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 ZNF587Q96SQ5 575 aaPredicted RBP8.36□□□□□ -1.07
SCFD1-221ENST00000556534 PRDM6Q9NQX0 595 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 FRRS1LQ9P0K9 344 aa8.36□□□□□ -1.07
SCFD1-221ENST00000556534 CES1P23141 567 aa8.35□□□□□ -1.07
SCFD1-221ENST00000556534 LINC00114Q6XXX2 140 aa8.35□□□□□ -1.07
SCFD1-221ENST00000556534 C8orf86Q6ZUL3 223 aa8.35□□□□□ -1.07
SCFD1-221ENST00000556534 TMC1Q8TDI8 760 aa8.35□□□□□ -1.07
SCFD1-221ENST00000556534 RRAGCQ9HB90 399 aa8.35□□□□□ -1.07
SCFD1-221ENST00000556534 SALL4Q9UJQ4 1053 aa8.35□□□□□ -1.07
SCFD1-221ENST00000556534 ZBTB7CA1YPR0 619 aa8.34□□□□□ -1.07
SCFD1-221ENST00000556534 TREHO43280 583 aa8.34□□□□□ -1.07
SCFD1-221ENST00000556534 COL9A3Q14050 684 aaPredicted RBP8.34□□□□□ -1.07
SCFD1-221ENST00000556534 DSC3Q14574 896 aa8.34□□□□□ -1.07
SCFD1-221ENST00000556534 GRIK5Q16478 980 aa8.34□□□□□ -1.07
SCFD1-221ENST00000556534 NUDT8Q8WV74 236 aa8.34□□□□□ -1.07
SCFD1-221ENST00000556534 NIF3L1Q9GZT8 377 aa8.34□□□□□ -1.07
SCFD1-221ENST00000556534 ZFYVE28Q9HCC9 887 aa8.34□□□□□ -1.07
SCFD1-221ENST00000556534 JPH1Q9HDC5 661 aaPredicted RBP8.34□□□□□ -1.07
SCFD1-221ENST00000556534 AMOTL2Q9Y2J4 779 aa8.34□□□□□ -1.07
SCFD1-221ENST00000556534 GHRHP01286 108 aa8.33□□□□□ -1.08
SCFD1-221ENST00000556534 ACPPP15309 386 aa8.33□□□□□ -1.08
SCFD1-221ENST00000556534 ATP11AP98196 1134 aa8.33□□□□□ -1.08
SCFD1-221ENST00000556534 ELMSAN1Q6PJG2 1045 aa8.33□□□□□ -1.08
SCFD1-221ENST00000556534 ZSCAN29Q8IWY8 852 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-221ENST00000556534 CEP120Q8N960 986 aa8.33□□□□□ -1.08
SCFD1-221ENST00000556534 PLD4Q96BZ4 506 aa8.33□□□□□ -1.08
SCFD1-221ENST00000556534 SMG9Q9H0W8 520 aaKnown RBP8.33□□□□□ -1.08
SCFD1-221ENST00000556534 CNTNAP5Q8WYK1 1306 aa8.32□□□□□ -1.08
SCFD1-221ENST00000556534 NID1P14543 1247 aa8.32□□□□□ -1.08
SCFD1-221ENST00000556534 FMR1Q06787 632 aaKnown RBP eCLIP8.32□□□□□ -1.08
SCFD1-221ENST00000556534 USPL1Q5W0Q7 1092 aa8.32□□□□□ -1.08
SCFD1-221ENST00000556534 DNAJC14Q6Y2X3 702 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-221ENST00000556534 NCAPG2Q86XI2 1143 aa8.32□□□□□ -1.08
SCFD1-221ENST00000556534 TTC9Q92623 222 aa8.32□□□□□ -1.08
SCFD1-221ENST00000556534 PMEPA1Q969W9 287 aa8.32□□□□□ -1.08
SCFD1-221ENST00000556534 TRIM11Q96F44 468 aa8.32□□□□□ -1.08
SCFD1-221ENST00000556534 MKL2Q9ULH7 1088 aa8.32□□□□□ -1.08
SCFD1-221ENST00000556534 LILRB5O75023 590 aa8.31□□□□□ -1.08
SCFD1-221ENST00000556534 RGS9O75916 674 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-221ENST00000556534 POLR3DP05423 398 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-221ENST00000556534 AFF1P51825 1210 aaKnown RBP8.31□□□□□ -1.08
SCFD1-221ENST00000556534 PODNQ7Z5L7 613 aa8.31□□□□□ -1.08
SCFD1-221ENST00000556534 SCARF2Q96GP6 870 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-221ENST00000556534 RASSF4Q9H2L5 321 aa8.31□□□□□ -1.08
SCFD1-221ENST00000556534 EIF1AYO14602 144 aaKnown RBP8.3□□□□□ -1.08
SCFD1-221ENST00000556534 GNB5O14775 395 aa8.3□□□□□ -1.08
SCFD1-221ENST00000556534 CPNE3O75131 537 aaKnown RBP8.3□□□□□ -1.08
SCFD1-221ENST00000556534 NEFLP07196 543 aa8.3□□□□□ -1.08
SCFD1-221ENST00000556534 TRIM26Q12899 539 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-221ENST00000556534 CCDC27Q2M243 656 aa8.3□□□□□ -1.08
SCFD1-221ENST00000556534 PEAR1Q5VY43 1037 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-221ENST00000556534 GALNT12Q8IXK2 581 aa8.3□□□□□ -1.08
SCFD1-221ENST00000556534 SPACA7Q96KW9 195 aa8.3□□□□□ -1.08
SCFD1-221ENST00000556534 CSRNP1Q96S65 589 aa8.3□□□□□ -1.08
SCFD1-221ENST00000556534 RBSNQ9H1K0 784 aa8.3□□□□□ -1.08
SCFD1-221ENST00000556534 DNAJC25Q9H1X3 360 aa8.3□□□□□ -1.08
SCFD1-221ENST00000556534 LATS2Q9NRM7 1088 aa8.3□□□□□ -1.08
SCFD1-221ENST00000556534 EDN3P14138 238 aa8.29□□□□□ -1.08
SCFD1-221ENST00000556534 ADAMTSL4Q6UY14 1074 aa8.29□□□□□ -1.08
SCFD1-221ENST00000556534 PBX4Q9BYU1 374 aa8.29□□□□□ -1.08
SCFD1-221ENST00000556534 SUV39H2Q9H5I1 410 aa8.29□□□□□ -1.08
SCFD1-221ENST00000556534 DZANK1Q9NVP4 752 aa8.29□□□□□ -1.08
SCFD1-221ENST00000556534 TRIM33Q9UPN9 1127 aa8.29□□□□□ -1.08
SCFD1-221ENST00000556534 NFKBIEO00221 500 aa8.28□□□□□ -1.08
SCFD1-221ENST00000556534 ENOX2Q16206 610 aaKnown RBP8.28□□□□□ -1.08
SCFD1-221ENST00000556534 ILDR2Q71H61 639 aa8.28□□□□□ -1.08
SCFD1-221ENST00000556534 BEND7Q8N7W2 519 aaPredicted RBP8.28□□□□□ -1.08
SCFD1-221ENST00000556534 HHIPQ96QV1 700 aa8.28□□□□□ -1.08
SCFD1-221ENST00000556534 ZKSCAN3Q9BRR0 538 aa8.28□□□□□ -1.08
SCFD1-221ENST00000556534 PNMA6FA0A0J9YX94 578 aa8.27□□□□□ -1.09
SCFD1-221ENST00000556534 RNF225M0QZC1 329 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-221ENST00000556534 P4HBP07237 508 aaKnown RBP8.27□□□□□ -1.09
SCFD1-221ENST00000556534 BAG6P46379 1132 aa8.27□□□□□ -1.09
SCFD1-221ENST00000556534 NPAS4Q8IUM7 802 aa8.27□□□□□ -1.09
SCFD1-221ENST00000556534 NPHS2Q9NP85 383 aa8.27□□□□□ -1.09
SCFD1-221ENST00000556534 ANKRD33BA6NCL7 494 aa8.26□□□□□ -1.09
SCFD1-221ENST00000556534 PIK3R2O00459 728 aa8.26□□□□□ -1.09
SCFD1-221ENST00000556534 TRPA1O75762 1119 aa8.26□□□□□ -1.09
SCFD1-221ENST00000556534 SMNDC1O75940 238 aaKnown RBP eCLIP8.26□□□□□ -1.09
SCFD1-221ENST00000556534 GSK3AP49840 483 aa8.26□□□□□ -1.09
SCFD1-221ENST00000556534 PLCB3Q01970 1234 aa8.26□□□□□ -1.09
SCFD1-221ENST00000556534 TMCO4Q5TGY1 634 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms