RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 GOLGA6L6A8MZA4 724 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 NBPF26B4DH59 902 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 DYNC1I1O14576 645 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 PFKFB2O60825 505 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 HSP90B1P14625 803 aaKnown RBP15.94■□□□□ 0.14
SHMT2-222ENST00000555774 TJP1Q07157 1748 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 STK3Q13188 491 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 GLIPR1L2Q4G1C9 344 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 NBPF14Q5TI25 921 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 NBPF10Q6P3W6 841 aaKnown RBP15.94■□□□□ 0.14
SHMT2-222ENST00000555774 DDX46Q7L014 1031 aaKnown RBP15.94■□□□□ 0.14
SHMT2-222ENST00000555774 NBPF15Q8N660 670 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 MAP7D2Q96T17 732 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 PDCL3Q9H2J4 239 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 CLSTN2Q9H4D0 955 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 UQCRHLA0A096LP55 91 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 UQCRHP07919 91 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 LIG1P18858 919 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 TPRNQ4KMQ1 711 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 ZMYM1Q5SVZ6 1142 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 CCDC129Q6ZRS4 1044 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 DHX32Q7L7V1 743 aaKnown RBP15.94■□□□□ 0.14
SHMT2-222ENST00000555774 CABLES1Q8TDN4 633 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 TNMDQ9H2S6 317 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 CFAP45Q9UL16 551 aa15.94■□□□□ 0.14
SHMT2-222ENST00000555774 KCPQ6ZWJ8 1503 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 HMGN5P82970 282 aaKnown RBP15.93■□□□□ 0.14
SHMT2-222ENST00000555774 TYRO3Q06418 890 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 NAA16Q6N069 864 aaPredicted RBP15.93■□□□□ 0.14
SHMT2-222ENST00000555774 DDX17Q92841 729 aaKnown RBP15.93■□□□□ 0.14
SHMT2-222ENST00000555774 BRF1Q92994 677 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 SEC62Q99442 399 aaKnown RBP15.93■□□□□ 0.14
SHMT2-222ENST00000555774 AGXT2Q9BYV1 514 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 DNAJC5Q9H3Z4 198 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 SPTLC3Q9NUV7 552 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 WDR17Q8IZU2 1322 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 H3BQV1 296 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 EYA2O00167 538 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 NKX1-1Q15270 411 aaPredicted RBP15.93■□□□□ 0.14
SHMT2-222ENST00000555774 IFFO2Q5TF58 517 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 FBXO3Q9UK99 471 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 MRVI1Q9Y6F6 885 aa15.93■□□□□ 0.14
SHMT2-222ENST00000555774 JAK2O60674 1132 aa15.92■□□□□ 0.14
SHMT2-222ENST00000555774 CAVIN2O95810 425 aa15.92■□□□□ 0.14
SHMT2-222ENST00000555774 NOLC1Q14978 699 aaKnown RBP eCLIP15.92■□□□□ 0.141e-8■■■□□ 15.5
SHMT2-222ENST00000555774 LRRFIP1Q32MZ4 808 aaKnown RBP15.92■□□□□ 0.14
SHMT2-222ENST00000555774 ATL3Q6DD88 541 aa15.92■□□□□ 0.14
SHMT2-222ENST00000555774 FAM173BQ6P4H8 233 aa15.92■□□□□ 0.14
SHMT2-222ENST00000555774 ZCRB1Q8TBF4 217 aaKnown RBP15.92■□□□□ 0.14
SHMT2-222ENST00000555774 PRIMPOLQ96LW4 560 aa15.92■□□□□ 0.14
SHMT2-222ENST00000555774 DACT1Q9NYF0 836 aa15.92■□□□□ 0.14
SHMT2-222ENST00000555774 CHMP3Q9Y3E7 222 aa15.92■□□□□ 0.14
SHMT2-222ENST00000555774 TNS2Q63HR2 1409 aa15.92■□□□□ 0.14
SHMT2-222ENST00000555774 DTNBO60941 627 aa15.91■□□□□ 0.14
SHMT2-222ENST00000555774 SCRN1Q12765 414 aa15.91■□□□□ 0.14
SHMT2-222ENST00000555774 STRCP1A6NGW2 1772 aa15.91■□□□□ 0.14
SHMT2-222ENST00000555774 GOLIM4O00461 696 aa15.91■□□□□ 0.14
SHMT2-222ENST00000555774 FGD1P98174 961 aa15.91■□□□□ 0.14
SHMT2-222ENST00000555774 EXOSC10Q01780 885 aaKnown RBP15.91■□□□□ 0.14
SHMT2-222ENST00000555774 STOX1Q6ZVD7 989 aa15.91■□□□□ 0.14
SHMT2-222ENST00000555774 NEUROD6Q96NK8 337 aa15.91■□□□□ 0.14
SHMT2-222ENST00000555774 NDUFB9Q9Y6M9 179 aa15.91■□□□□ 0.14
SHMT2-222ENST00000555774 TTLL7Q6ZT98 887 aa15.9■□□□□ 0.14
SHMT2-222ENST00000555774 MTERF4Q7Z6M4 381 aaKnown RBP15.9■□□□□ 0.14
SHMT2-222ENST00000555774 FBXL16Q8N461 479 aa15.9■□□□□ 0.14
SHMT2-222ENST00000555774 RNF113AO15541 343 aaKnown RBP15.9■□□□□ 0.14
SHMT2-222ENST00000555774 NSUN7Q8NE18 718 aaKnown RBP15.9■□□□□ 0.14
SHMT2-222ENST00000555774 TTC12Q9H892 705 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-222ENST00000555774 TFIP11Q9UBB9 837 aaKnown RBP15.9■□□□□ 0.14
SHMT2-222ENST00000555774 IFIT1P09914 478 aaKnown RBP15.89■□□□□ 0.13
SHMT2-222ENST00000555774 BICD2Q8TD16 824 aa15.89■□□□□ 0.13
SHMT2-222ENST00000555774 AP5Z1O43299 807 aa15.89■□□□□ 0.13
SHMT2-222ENST00000555774 ZNF274Q96GC6 653 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-222ENST00000555774 PGBD1Q96JS3 809 aa15.89■□□□□ 0.13
SHMT2-222ENST00000555774 ABCC12Q96J65 1359 aa15.89■□□□□ 0.13
SHMT2-222ENST00000555774 HSPD1P10809 573 aaKnown RBP15.88■□□□□ 0.13
SHMT2-222ENST00000555774 CAMK4Q16566 473 aa15.88■□□□□ 0.13
SHMT2-222ENST00000555774 TDRD7Q8NHU6 1098 aaKnown RBP15.88■□□□□ 0.13
SHMT2-222ENST00000555774 ZNF830Q96NB3 372 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-222ENST00000555774 MAST3O60307 1309 aa15.88■□□□□ 0.13
SHMT2-222ENST00000555774 A0A1B0GUL7 405 aa15.88■□□□□ 0.13
SHMT2-222ENST00000555774 CTAGE5O15320 804 aa15.88■□□□□ 0.13
SHMT2-222ENST00000555774 CHGBP05060 677 aa15.88■□□□□ 0.13
SHMT2-222ENST00000555774 ZFYP08048 801 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-222ENST00000555774 PLCB2Q00722 1185 aa15.88■□□□□ 0.13
SHMT2-222ENST00000555774 DNTTIP2Q5QJE6 756 aaKnown RBP15.88■□□□□ 0.13
SHMT2-222ENST00000555774 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-222ENST00000555774 MYRIPQ8NFW9 859 aa15.88■□□□□ 0.13
SHMT2-222ENST00000555774 ISCA1Q9BUE6 129 aa15.88■□□□□ 0.13
SHMT2-222ENST00000555774 AKAP2Q9Y2D5 859 aa15.88■□□□□ 0.13
SHMT2-222ENST00000555774 SALL1Q9NSC2 1324 aa15.87■□□□□ 0.13
SHMT2-222ENST00000555774 COL5A2P05997 1499 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-222ENST00000555774 PTPDC1A2A3K4 754 aa15.87■□□□□ 0.13
SHMT2-222ENST00000555774 E7EWF7 191 aa15.87■□□□□ 0.13
SHMT2-222ENST00000555774 TIMM10P62072 90 aa15.87■□□□□ 0.13
SHMT2-222ENST00000555774 ANO6Q4KMQ2 910 aa15.87■□□□□ 0.13
SHMT2-222ENST00000555774 ZNF396Q96N95 335 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-222ENST00000555774 CBX8Q9HC52 389 aa15.87■□□□□ 0.13
SHMT2-222ENST00000555774 CTNNA3Q9UI47 895 aa15.87■□□□□ 0.13
SHMT2-222ENST00000555774 RCOR1Q9UKL0 485 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms