RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 BRIP1Q9BX63 1249 aa12.52□□□□□ -0.4
SRP54-208ENST00000555557 OSBPL3Q9H4L5 887 aa12.52□□□□□ -0.4
SRP54-208ENST00000555557 STAP2Q9UGK3 403 aa12.52□□□□□ -0.4
SRP54-208ENST00000555557 ATF5Q9Y2D1 282 aaPredicted RBP12.52□□□□□ -0.4
SRP54-208ENST00000555557 A0A1B0GUL7 405 aa12.52□□□□□ -0.41
SRP54-208ENST00000555557 TTC22Q5TAA0 569 aa12.52□□□□□ -0.41
SRP54-208ENST00000555557 VGLL2Q8N8G2 317 aa12.52□□□□□ -0.41
SRP54-208ENST00000555557 SLC16A10Q8TF71 515 aa12.52□□□□□ -0.41
SRP54-208ENST00000555557 BSDC1Q9NW68 430 aaPredicted RBP12.52□□□□□ -0.41
SRP54-208ENST00000555557 TAF1P21675 1872 aa12.52□□□□□ -0.41
SRP54-208ENST00000555557 RIC1Q4ADV7 1423 aa12.52□□□□□ -0.41
SRP54-208ENST00000555557 KLRG2A4D1S0 409 aaPredicted RBP12.51□□□□□ -0.41
SRP54-208ENST00000555557 PDE8BO95263 885 aa12.51□□□□□ -0.41
SRP54-208ENST00000555557 CHRNDQ07001 517 aa12.51□□□□□ -0.41
SRP54-208ENST00000555557 PI4K2BQ8TCG2 481 aa12.51□□□□□ -0.41
SRP54-208ENST00000555557 QSER1Q2KHR3 1735 aa12.51□□□□□ -0.41
SRP54-208ENST00000555557 WTIPA6NIX2 430 aaPredicted RBP12.5□□□□□ -0.41
SRP54-208ENST00000555557 MAP4K4O95819 1239 aaPredicted RBP12.5□□□□□ -0.41
SRP54-208ENST00000555557 ADORA1P30542 326 aa12.5□□□□□ -0.41
SRP54-208ENST00000555557 GRAPQ13588 217 aa12.5□□□□□ -0.41
SRP54-208ENST00000555557 BMP2KLQ5H9B9 411 aa12.5□□□□□ -0.41
SRP54-208ENST00000555557 GRAPLQ8TC17 118 aaPredicted RBP12.5□□□□□ -0.41
SRP54-208ENST00000555557 GPR108Q9NPR9 543 aa12.5□□□□□ -0.41
SRP54-208ENST00000555557 ECHDC1Q9NTX5 307 aa12.5□□□□□ -0.41
SRP54-208ENST00000555557 MINPP1Q9UNW1 487 aa12.5□□□□□ -0.41
SRP54-208ENST00000555557 MROH5Q6ZUA9 1318 aa12.5□□□□□ -0.41
SRP54-208ENST00000555557 ATP2B3Q16720 1220 aa12.5□□□□□ -0.41
SRP54-208ENST00000555557 C8orf34Q49A92 452 aa12.5□□□□□ -0.41
SRP54-208ENST00000555557 RBM17Q96I25 401 aaKnown RBP12.5□□□□□ -0.41
SRP54-208ENST00000555557 AKAP2Q9Y2D5 859 aa12.5□□□□□ -0.41
SRP54-208ENST00000555557 LRP5O75197 1615 aa12.49□□□□□ -0.41
SRP54-208ENST00000555557 SRGNP10124 158 aa12.49□□□□□ -0.41
SRP54-208ENST00000555557 SDSP20132 328 aa12.49□□□□□ -0.41
SRP54-208ENST00000555557 PDE6BP35913 854 aa12.49□□□□□ -0.41
SRP54-208ENST00000555557 XAGE2Q96GT9 111 aa12.49□□□□□ -0.41
SRP54-208ENST00000555557 BOLA2Q9H3K6 86 aa12.49□□□□□ -0.41
SRP54-208ENST00000555557 NRXN2Q9P2S2 1712 aa12.49□□□□□ -0.41
SRP54-208ENST00000555557 ZNF609O15014 1411 aa12.49□□□□□ -0.41
SRP54-208ENST00000555557 TTC41PQ6P2S7 1318 aa12.49□□□□□ -0.41
SRP54-208ENST00000555557 HOXA10P31260 410 aaPredicted RBP12.49□□□□□ -0.41
SRP54-208ENST00000555557 GPATCH3Q96I76 525 aa12.49□□□□□ -0.41
SRP54-208ENST00000555557 CASZ1Q86V15 1759 aa12.48□□□□□ -0.41
SRP54-208ENST00000555557 TRIM6-TRIM34B2RNG4 842 aa12.48□□□□□ -0.41
SRP54-208ENST00000555557 FGFR2P21802 821 aa12.48□□□□□ -0.41
SRP54-208ENST00000555557 CHRNA5P30532 468 aa12.48□□□□□ -0.41
SRP54-208ENST00000555557 PUM3Q15397 648 aaKnown RBP12.48□□□□□ -0.41
SRP54-208ENST00000555557 C2CD5Q86YS7 1000 aa12.48□□□□□ -0.41
SRP54-208ENST00000555557 RILPL2Q969X0 211 aa12.48□□□□□ -0.41
SRP54-208ENST00000555557 BACH2Q9BYV9 841 aa12.48□□□□□ -0.41
SRP54-208ENST00000555557 MTFR1LQ9H019 292 aa12.48□□□□□ -0.41
SRP54-208ENST00000555557 NDUFB9Q9Y6M9 179 aa12.48□□□□□ -0.41
SRP54-208ENST00000555557 GOLGB1Q14789 3259 aaKnown RBP12.48□□□□□ -0.41
SRP54-208ENST00000555557 AOX1Q06278 1338 aa12.47□□□□□ -0.41
SRP54-208ENST00000555557 ERC2O15083 957 aa12.47□□□□□ -0.41
SRP54-208ENST00000555557 GLRX3O76003 335 aaKnown RBP12.47□□□□□ -0.41
SRP54-208ENST00000555557 GORABQ5T7V8 394 aa12.47□□□□□ -0.41
SRP54-208ENST00000555557 LPIN2Q92539 896 aa12.47□□□□□ -0.41
SRP54-208ENST00000555557 ZNF622Q969S3 477 aaKnown RBP eCLIP12.47□□□□□ -0.417e-7■■□□□ 11.8
SRP54-208ENST00000555557 CRAMP1Q96RY5 1269 aa12.47□□□□□ -0.41
SRP54-208ENST00000555557 ANKRD31Q8N7Z5 1873 aa12.47□□□□□ -0.41
SRP54-208ENST00000555557 SPEF2Q9C093 1822 aa12.47□□□□□ -0.41
SRP54-208ENST00000555557 NPR1P16066 1061 aa12.47□□□□□ -0.41
SRP54-208ENST00000555557 MASTLQ96GX5 879 aa12.47□□□□□ -0.41
SRP54-208ENST00000555557 H0YIN7 160 aa12.46□□□□□ -0.42
SRP54-208ENST00000555557 BBOX1O75936 387 aa12.46□□□□□ -0.42
SRP54-208ENST00000555557 EDC3Q96F86 508 aaKnown RBP12.46□□□□□ -0.42
SRP54-208ENST00000555557 SEC24BO95487 1268 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 SLC5A1P13866 664 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 ATP5JP18859 108 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 CCDC158Q5M9N0 1113 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 OLFM4Q6UX06 510 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 TSHZ2Q9NRE2 1034 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 ANKIB1Q9P2G1 1089 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 IFIT1P09914 478 aaKnown RBP12.45□□□□□ -0.42
SRP54-208ENST00000555557 KLRK1P26718 216 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 POLD1P28340 1107 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 TTC39AQ5SRH9 613 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 DNAJC2Q99543 621 aaKnown RBP12.45□□□□□ -0.42
SRP54-208ENST00000555557 ANKRD2Q9GZV1 360 aa12.45□□□□□ -0.42
SRP54-208ENST00000555557 NSFL1CQ9UNZ2 370 aaKnown RBP12.45□□□□□ -0.42
SRP54-208ENST00000555557 PPEF1O14829 653 aaPredicted RBP12.44□□□□□ -0.42
SRP54-208ENST00000555557 ALDH1B1P30837 517 aa12.44□□□□□ -0.42
SRP54-208ENST00000555557 PHKA1P46020 1223 aa12.44□□□□□ -0.42
SRP54-208ENST00000555557 KCNJ4P48050 445 aa12.44□□□□□ -0.42
SRP54-208ENST00000555557 BCAMP50895 628 aa12.44□□□□□ -0.42
SRP54-208ENST00000555557 GPSM2P81274 684 aa12.44□□□□□ -0.42
SRP54-208ENST00000555557 SCARF1Q14162 830 aa12.44□□□□□ -0.42
SRP54-208ENST00000555557 CCDC102BQ68D86 513 aa12.44□□□□□ -0.42
SRP54-208ENST00000555557 TBC1D9Q6ZT07 1266 aa12.44□□□□□ -0.42
SRP54-208ENST00000555557 SNRKQ9NRH2 765 aa12.44□□□□□ -0.42
SRP54-208ENST00000555557 A0A0G2JLW4 131 aa12.43□□□□□ -0.42
SRP54-208ENST00000555557 GYG1P46976 350 aa12.43□□□□□ -0.42
SRP54-208ENST00000555557 UBE4AQ14139 1066 aa12.43□□□□□ -0.42
SRP54-208ENST00000555557 PI16Q6UXB8 463 aa12.43□□□□□ -0.42
SRP54-208ENST00000555557 GPR101Q96P66 508 aaPredicted RBP12.43□□□□□ -0.42
SRP54-208ENST00000555557 ZNF219Q9P2Y4 722 aaPredicted RBP12.43□□□□□ -0.42
SRP54-208ENST00000555557 PPP1R1BQ9UD71 204 aaPredicted RBP12.43□□□□□ -0.42
SRP54-208ENST00000555557 C10orf71Q711Q0 1435 aa12.43□□□□□ -0.42
SRP54-208ENST00000555557 CDC45O75419 566 aa12.43□□□□□ -0.42
SRP54-208ENST00000555557 FKBP4Q02790 459 aaKnown RBP eCLIP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms