RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 CALD1Q05682 793 aaKnown RBP13.65□□□□□ -0.22
SHMT2-215ENST00000554656 DOK7Q18PE1 504 aa13.65□□□□□ -0.22
SHMT2-215ENST00000554656 SAMD7Q7Z3H4 446 aa13.65□□□□□ -0.22
SHMT2-215ENST00000554656 CCDC191Q8NCU4 936 aa13.65□□□□□ -0.22
SHMT2-215ENST00000554656 TSR2Q969E8 191 aaKnown RBP13.65□□□□□ -0.22
SHMT2-215ENST00000554656 AOC2O75106 756 aa13.64□□□□□ -0.23
SHMT2-215ENST00000554656 CENPBP07199 599 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-215ENST00000554656 GRM1Q13255 1194 aa13.64□□□□□ -0.23
SHMT2-215ENST00000554656 SAPCD2Q86UD0 394 aa13.64□□□□□ -0.23
SHMT2-215ENST00000554656 ZC3H15Q8WU90 426 aaKnown RBP13.64□□□□□ -0.23
SHMT2-215ENST00000554656 DPF2Q92785 391 aa13.64□□□□□ -0.23
SHMT2-215ENST00000554656 METTL22Q9BUU2 404 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-215ENST00000554656 PODXL2Q9NZ53 605 aa13.64□□□□□ -0.23
SHMT2-215ENST00000554656 PDE8AO60658 829 aa13.63□□□□□ -0.23
SHMT2-215ENST00000554656 IGKV5-2P06315 115 aa13.63□□□□□ -0.23
SHMT2-215ENST00000554656 MAP2K1Q02750 393 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-215ENST00000554656 TBC1D10BQ4KMP7 808 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-215ENST00000554656 CCDC30Q5VVM6 783 aa13.63□□□□□ -0.23
SHMT2-215ENST00000554656 PAXIP1Q6ZW49 1069 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-215ENST00000554656 CCDC85AQ96PX6 553 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-215ENST00000554656 CWC25Q9NXE8 425 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-215ENST00000554656 MAP3K2Q9Y2U5 619 aa13.63□□□□□ -0.23
SHMT2-215ENST00000554656 CACNA1FO60840 1977 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 WTIPA6NIX2 430 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-215ENST00000554656 H7C1D1 291 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 UFL1O94874 794 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 ECE1P42892 770 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 CCDC152Q4G0S7 254 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 G2E3Q7L622 706 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 USP48Q86UV5 1035 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 EYA3Q99504 573 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 ZNF408Q9H9D4 720 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 A0A1B0GUL6 1792 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 ZNF609O15014 1411 aa13.62□□□□□ -0.23
SHMT2-215ENST00000554656 PI4KAP2A4QPH2 592 aa13.61□□□□□ -0.23
SHMT2-215ENST00000554656 CDC37L1Q7L3B6 337 aa13.61□□□□□ -0.23
SHMT2-215ENST00000554656 WWC1Q8IX03 1113 aa13.61□□□□□ -0.23
SHMT2-215ENST00000554656 PI4KAP1Q8N8J0 262 aa13.61□□□□□ -0.23
SHMT2-215ENST00000554656 CASP8AP2Q9UKL3 1982 aa13.61□□□□□ -0.23
SHMT2-215ENST00000554656 ASTN2O75129 1339 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-215ENST00000554656 ADM5C9JUS6 153 aa13.6□□□□□ -0.23
SHMT2-215ENST00000554656 DDX58O95786 925 aaKnown RBP13.6□□□□□ -0.23
SHMT2-215ENST00000554656 VIL1P09327 827 aaKnown RBP13.6□□□□□ -0.23
SHMT2-215ENST00000554656 RPS12P25398 132 aaKnown RBP13.6□□□□□ -0.23
SHMT2-215ENST00000554656 CTSWP56202 376 aa13.6□□□□□ -0.23
SHMT2-215ENST00000554656 CCDC27Q2M243 656 aa13.6□□□□□ -0.23
SHMT2-215ENST00000554656 CWF19L2Q2TBE0 894 aaKnown RBP13.6□□□□□ -0.23
SHMT2-215ENST00000554656 KSR2Q6VAB6 950 aa13.6□□□□□ -0.23
SHMT2-215ENST00000554656 HHIPL1Q96JK4 782 aa13.6□□□□□ -0.23
SHMT2-215ENST00000554656 ZIC5Q96T25 663 aa13.6□□□□□ -0.23
SHMT2-215ENST00000554656 MRS2Q9HD23 443 aa13.6□□□□□ -0.23
SHMT2-215ENST00000554656 TSKSQ9UJT2 592 aa13.6□□□□□ -0.23
SHMT2-215ENST00000554656 GGA1Q9UJY5 639 aa13.6□□□□□ -0.23
SHMT2-215ENST00000554656 MAP2K2P36507 400 aa13.59□□□□□ -0.23
SHMT2-215ENST00000554656 ZC3H12CQ9C0D7 883 aaKnown RBP13.59□□□□□ -0.23
SHMT2-215ENST00000554656 ANKIB1Q9P2G1 1089 aa13.59□□□□□ -0.23
SHMT2-215ENST00000554656 NEURL1BA8MQ27 555 aa13.58□□□□□ -0.24
SHMT2-215ENST00000554656 HSP90B1P14625 803 aaKnown RBP13.58□□□□□ -0.24
SHMT2-215ENST00000554656 KIF4BQ2VIQ3 1234 aa13.58□□□□□ -0.24
SHMT2-215ENST00000554656 TWISTNBQ3B726 338 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-215ENST00000554656 RBM26Q5T8P6 1007 aaKnown RBP13.58□□□□□ -0.24
SHMT2-215ENST00000554656 KRT26Q7Z3Y9 468 aa13.58□□□□□ -0.24
SHMT2-215ENST00000554656 ANKRD18AQ8IVF6 992 aa13.58□□□□□ -0.24
SHMT2-215ENST00000554656 TTLL11Q8NHH1 800 aa13.58□□□□□ -0.24
SHMT2-215ENST00000554656 GMLQ99445 158 aa13.58□□□□□ -0.24
SHMT2-215ENST00000554656 GREM2Q9H772 168 aa13.58□□□□□ -0.24
SHMT2-215ENST00000554656 XDHP47989 1333 aa13.58□□□□□ -0.24
SHMT2-215ENST00000554656 ZNF280AP59817 542 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-215ENST00000554656 GGA3Q9NZ52 723 aa13.57□□□□□ -0.24
SHMT2-215ENST00000554656 IL16Q14005 1332 aa13.57□□□□□ -0.24
SHMT2-215ENST00000554656 FAM155AB1AL88 458 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-215ENST00000554656 H7C1W4 665 aa13.56□□□□□ -0.24
SHMT2-215ENST00000554656 BRPF1P55201 1214 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-215ENST00000554656 CASP7P55210 303 aa13.56□□□□□ -0.24
SHMT2-215ENST00000554656 HUNKP57058 714 aa13.56□□□□□ -0.24
SHMT2-215ENST00000554656 RSBN1LQ6PCB5 846 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-215ENST00000554656 UBE3BQ7Z3V4 1068 aa13.56□□□□□ -0.24
SHMT2-215ENST00000554656 ABHD8Q96I13 439 aa13.56□□□□□ -0.24
SHMT2-215ENST00000554656 STK31Q9BXU1 1019 aa13.56□□□□□ -0.24
SHMT2-215ENST00000554656 FANCIQ9NVI1 1328 aa13.56□□□□□ -0.24
SHMT2-215ENST00000554656 MED23Q9ULK4 1368 aa13.56□□□□□ -0.24
SHMT2-215ENST00000554656 SLC4A2P04920 1241 aa13.55□□□□□ -0.24
SHMT2-215ENST00000554656 ATP2B4P23634 1241 aa13.55□□□□□ -0.24
SHMT2-215ENST00000554656 YTHDC1Q96MU7 727 aaKnown RBP13.55□□□□□ -0.24
SHMT2-215ENST00000554656 CDC5LQ99459 802 aaKnown RBP13.55□□□□□ -0.24
SHMT2-215ENST00000554656 BEGAINQ9BUH8 593 aa13.55□□□□□ -0.24
SHMT2-215ENST00000554656 CHMP4AQ9BY43 222 aa13.55□□□□□ -0.24
SHMT2-215ENST00000554656 GBA2Q9HCG7 927 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-215ENST00000554656 BSDC1Q9NW68 430 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-215ENST00000554656 MINPP1Q9UNW1 487 aa13.55□□□□□ -0.24
SHMT2-215ENST00000554656 PAPPA2Q9BXP8 1791 aa13.55□□□□□ -0.24
SHMT2-215ENST00000554656 AKAP11Q9UKA4 1901 aa13.54□□□□□ -0.24
SHMT2-215ENST00000554656 G3V3G9 751 aa13.54□□□□□ -0.24
SHMT2-215ENST00000554656 NEXNQ0ZGT2 675 aa13.54□□□□□ -0.24
SHMT2-215ENST00000554656 FLIIQ13045 1269 aa13.54□□□□□ -0.24
SHMT2-215ENST00000554656 GCKRQ14397 625 aa13.54□□□□□ -0.24
SHMT2-215ENST00000554656 DCAF8Q5TAQ9 597 aa13.54□□□□□ -0.24
SHMT2-215ENST00000554656 TXNRD3Q86VQ6 643 aa13.54□□□□□ -0.24
SHMT2-215ENST00000554656 AGBL3Q8NEM8 1001 aa13.54□□□□□ -0.24
SHMT2-215ENST00000554656 DCPSQ96C86 337 aaKnown RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms