RNA–Protein interactions for RNA: ENST00000553846.1

PRKCH-208, Transcript of protein kinase C eta, humanhuman

TSL 4

Gene PRKCH, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-208ENST00000553846 GMLQ99445 158 aa12.03□□□□□ -0.48
PRKCH-208ENST00000553846 CFHR5Q9BXR6 569 aa12.03□□□□□ -0.48
PRKCH-208ENST00000553846 TCIRG1Q13488 830 aa12.02□□□□□ -0.49
PRKCH-208ENST00000553846 CNGB1Q14028 1251 aaPredicted RBP12.02□□□□□ -0.49
PRKCH-208ENST00000553846 SF3B3Q15393 1217 aaKnown RBP12.02□□□□□ -0.49
PRKCH-208ENST00000553846 NFE2L2Q16236 605 aa12.02□□□□□ -0.49
PRKCH-208ENST00000553846 HABP4Q5JVS0 413 aaKnown RBP12.02□□□□□ -0.49
PRKCH-208ENST00000553846 KIAA0100Q14667 2235 aaKnown RBP12.02□□□□□ -0.49
PRKCH-208ENST00000553846 MOB2Q70IA6 237 aa12.01□□□□□ -0.49
PRKCH-208ENST00000553846 SULF1Q8IWU6 871 aa12.01□□□□□ -0.49
PRKCH-208ENST00000553846 TBC1D16Q8TBP0 767 aa12.01□□□□□ -0.49
PRKCH-208ENST00000553846 PITPNM2Q9BZ72 1349 aa12.01□□□□□ -0.49
PRKCH-208ENST00000553846 CEP290O15078 2479 aa12.01□□□□□ -0.49
PRKCH-208ENST00000553846 TBC1D8O95759 1140 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 TM4SF4P48230 202 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 DOK7Q18PE1 504 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 HSP90AB3PQ58FF7 597 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 RBM26Q5T8P6 1007 aaKnown RBP12□□□□□ -0.49
PRKCH-208ENST00000553846 ANGEL2Q5VTE6 544 aaKnown RBP12□□□□□ -0.49
PRKCH-208ENST00000553846 FBXO46Q6PJ61 603 aaPredicted RBP12□□□□□ -0.49
PRKCH-208ENST00000553846 COPS6Q7L5N1 327 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 XAGE3Q8WTP9 111 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 GCC1Q96CN9 775 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 PCGF6Q9BYE7 350 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 R3HDMLQ9H3Y0 253 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 PODXL2Q9NZ53 605 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 TRMT112Q9UI30 125 aaKnown RBP12□□□□□ -0.49
PRKCH-208ENST00000553846 A0A0C4DFX4 3053 aa12□□□□□ -0.49
PRKCH-208ENST00000553846 GPR25O00155 361 aa11.99□□□□□ -0.49
PRKCH-208ENST00000553846 RIMBP2O15034 1052 aa11.99□□□□□ -0.49
PRKCH-208ENST00000553846 ISCA1Q9BUE6 129 aa11.99□□□□□ -0.49
PRKCH-208ENST00000553846 NSFL1CQ9UNZ2 370 aaKnown RBP11.99□□□□□ -0.49
PRKCH-208ENST00000553846 COL6A3P12111 3177 aa11.99□□□□□ -0.49
PRKCH-208ENST00000553846 LAMA3Q16787 3333 aa11.99□□□□□ -0.49
PRKCH-208ENST00000553846 TRIOBPQ9H2D6 2365 aa11.98□□□□□ -0.49
PRKCH-208ENST00000553846 FXR1P51114 621 aaKnown RBP eCLIP11.98□□□□□ -0.49
PRKCH-208ENST00000553846 SCARF1Q14162 830 aa11.98□□□□□ -0.49
PRKCH-208ENST00000553846 RSBN1LQ6PCB5 846 aaPredicted RBP11.98□□□□□ -0.49
PRKCH-208ENST00000553846 AGBL3Q8NEM8 1001 aa11.98□□□□□ -0.49
PRKCH-208ENST00000553846 NECTIN2Q92692 538 aa11.98□□□□□ -0.49
PRKCH-208ENST00000553846 POTEFA5A3E0 1075 aa11.97□□□□□ -0.49
PRKCH-208ENST00000553846 BABAM1Q9NWV8 329 aa11.97□□□□□ -0.49
PRKCH-208ENST00000553846 TSPYL4Q9UJ04 414 aa11.97□□□□□ -0.49
PRKCH-208ENST00000553846 UBE2Q2LH0YL09 131 aa11.96□□□□□ -0.49
PRKCH-208ENST00000553846 C6orf229H3BNL8 230 aa11.96□□□□□ -0.49
PRKCH-208ENST00000553846 EIF2S2P20042 333 aaKnown RBP11.96□□□□□ -0.49
PRKCH-208ENST00000553846 ZNF428Q96B54 188 aa11.96□□□□□ -0.49
PRKCH-208ENST00000553846 FAM89AQ96GI7 184 aa11.96□□□□□ -0.49
PRKCH-208ENST00000553846 EYA3Q99504 573 aa11.96□□□□□ -0.49
PRKCH-208ENST00000553846 MYOZ2Q9NPC6 264 aa11.96□□□□□ -0.49
PRKCH-208ENST00000553846 HDAC9Q9UKV0 1011 aa11.96□□□□□ -0.49
PRKCH-208ENST00000553846 SCAF8Q9UPN6 1271 aaKnown RBP11.96□□□□□ -0.49
PRKCH-208ENST00000553846 RPS8P62241 208 aaKnown RBP11.95□□□□□ -0.5
PRKCH-208ENST00000553846 TRIM28Q13263 835 aaKnown RBP11.95□□□□□ -0.5
PRKCH-208ENST00000553846 KRT24Q2M2I5 525 aa11.95□□□□□ -0.5
PRKCH-208ENST00000553846 SSC5DA1L4H1 1573 aa11.95□□□□□ -0.5
PRKCH-208ENST00000553846 CAP1Q01518 475 aa11.94□□□□□ -0.5
PRKCH-208ENST00000553846 AIMP1Q12904 312 aaKnown RBP11.94□□□□□ -0.5
PRKCH-208ENST00000553846 NBPF9Q3BBW0 867 aa11.94□□□□□ -0.5
PRKCH-208ENST00000553846 LDLRAD1Q5T700 205 aa11.94□□□□□ -0.5
PRKCH-208ENST00000553846 PRAMEF18Q5VWM3 479 aa11.94□□□□□ -0.5
PRKCH-208ENST00000553846 PLBD2Q8NHP8 589 aa11.94□□□□□ -0.5
PRKCH-208ENST00000553846 SEC31BQ9NQW1 1179 aa11.94□□□□□ -0.5
PRKCH-208ENST00000553846 FKTNO75072 461 aa11.93□□□□□ -0.5
PRKCH-208ENST00000553846 UFL1O94874 794 aa11.93□□□□□ -0.5
PRKCH-208ENST00000553846 USP17L8P0C7I0 530 aa11.93□□□□□ -0.5
PRKCH-208ENST00000553846 OTOP1Q7RTM1 612 aa11.93□□□□□ -0.5
PRKCH-208ENST00000553846 CHPF2Q9P2E5 772 aa11.93□□□□□ -0.5
PRKCH-208ENST00000553846 CUL9Q8IWT3 2517 aa11.92□□□□□ -0.5
PRKCH-208ENST00000553846 WTIPA6NIX2 430 aaPredicted RBP11.92□□□□□ -0.5
PRKCH-208ENST00000553846 ATP5J2-PTCD1G3V325 749 aa11.92□□□□□ -0.5
PRKCH-208ENST00000553846 PTPN12Q05209 780 aaKnown RBP11.92□□□□□ -0.5
PRKCH-208ENST00000553846 ARMC5Q96C12 935 aa11.92□□□□□ -0.5
PRKCH-208ENST00000553846 ZBED3Q96IU2 234 aaPredicted RBP11.92□□□□□ -0.5
PRKCH-208ENST00000553846 ZC3H12CQ9C0D7 883 aaKnown RBP11.92□□□□□ -0.5
PRKCH-208ENST00000553846 CHL1O00533 1208 aa11.91□□□□□ -0.5
PRKCH-208ENST00000553846 WNT10BO00744 389 aa11.91□□□□□ -0.5
PRKCH-208ENST00000553846 IRS4O14654 1257 aaPredicted RBP11.91□□□□□ -0.5
PRKCH-208ENST00000553846 SREBF2Q12772 1141 aa11.91□□□□□ -0.5
PRKCH-208ENST00000553846 DACT2Q5SW24 774 aa11.91□□□□□ -0.5
PRKCH-208ENST00000553846 SPRYD7Q5W111 196 aa11.91□□□□□ -0.5
PRKCH-208ENST00000553846 GGA1Q9UJY5 639 aa11.91□□□□□ -0.5
PRKCH-208ENST00000553846 COL1A1P02452 1464 aaPredicted RBP11.9□□□□□ -0.5
PRKCH-208ENST00000553846 USP17L3A6NCW0 530 aa11.9□□□□□ -0.5
PRKCH-208ENST00000553846 USP17L4A6NCW7 530 aa11.9□□□□□ -0.5
PRKCH-208ENST00000553846 IGF2BP3O00425 579 aaKnown RBP eCLIP11.9□□□□□ -0.5
PRKCH-208ENST00000553846 HOXB7P09629 217 aa11.9□□□□□ -0.5
PRKCH-208ENST00000553846 ANKRD13DQ6ZTN6 518 aa11.9□□□□□ -0.5
PRKCH-208ENST00000553846 USP17L1Q7RTZ2 530 aa11.9□□□□□ -0.5
PRKCH-208ENST00000553846 MXD3Q9BW11 206 aa11.9□□□□□ -0.5
PRKCH-208ENST00000553846 OTOFQ9HC10 1997 aa11.9□□□□□ -0.5
PRKCH-208ENST00000553846 ECM29Q5VYK3 1845 aa11.9□□□□□ -0.5
PRKCH-208ENST00000553846 SPEF2Q9C093 1822 aa11.9□□□□□ -0.5
PRKCH-208ENST00000553846 MED23Q9ULK4 1368 aa11.9□□□□□ -0.5
PRKCH-208ENST00000553846 XDHP47989 1333 aa11.89□□□□□ -0.51
PRKCH-208ENST00000553846 MKRN3Q13064 507 aaKnown RBP11.89□□□□□ -0.51
PRKCH-208ENST00000553846 MAP3K11Q16584 847 aa11.89□□□□□ -0.51
PRKCH-208ENST00000553846 RTL5Q5HYW3 569 aaPredicted RBP11.89□□□□□ -0.51
PRKCH-208ENST00000553846 INTS3Q68E01 1043 aaKnown RBP11.89□□□□□ -0.51
PRKCH-208ENST00000553846 PODNQ7Z5L7 613 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms