RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 PDIA6Q15084 440 aa18.27■□□□□ 0.52
PRPF39-204ENST00000553605 CFHR5Q9BXR6 569 aa18.27■□□□□ 0.52
PRPF39-204ENST00000553605 KDM3BQ7LBC6 1761 aa18.27■□□□□ 0.51
PRPF39-204ENST00000553605 LRRC37AA6NMS7 1700 aa18.26■□□□□ 0.51
PRPF39-204ENST00000553605 CLSPNQ9HAW4 1339 aa18.26■□□□□ 0.51
PRPF39-204ENST00000553605 SREBF2Q12772 1141 aa18.26■□□□□ 0.51
PRPF39-204ENST00000553605 MKRN3Q13064 507 aaKnown RBP18.26■□□□□ 0.51
PRPF39-204ENST00000553605 CELF1Q92879 486 aaKnown RBP18.26■□□□□ 0.51
PRPF39-204ENST00000553605 ZC3H12CQ9C0D7 883 aaKnown RBP18.26■□□□□ 0.51
PRPF39-204ENST00000553605 R3HDMLQ9H3Y0 253 aa18.26■□□□□ 0.51
PRPF39-204ENST00000553605 G3V3G9 751 aa18.25■□□□□ 0.51
PRPF39-204ENST00000553605 EIF2S2P20042 333 aaKnown RBP18.25■□□□□ 0.51
PRPF39-204ENST00000553605 TCIRG1Q13488 830 aa18.25■□□□□ 0.51
PRPF39-204ENST00000553605 TTLL12Q14166 644 aaPredicted RBP18.25■□□□□ 0.51
PRPF39-204ENST00000553605 DCAF8Q5TAQ9 597 aa18.25■□□□□ 0.51
PRPF39-204ENST00000553605 TBC1D16Q8TBP0 767 aa18.25■□□□□ 0.51
PRPF39-204ENST00000553605 PITPNM2Q9BZ72 1349 aa18.24■□□□□ 0.51
PRPF39-204ENST00000553605 ANXA1P04083 346 aa18.24■□□□□ 0.51
PRPF39-204ENST00000553605 PRAMEF18Q5VWM3 479 aa18.24■□□□□ 0.51
PRPF39-204ENST00000553605 AGBL3Q8NEM8 1001 aa18.24■□□□□ 0.51
PRPF39-204ENST00000553605 SCAF8Q9UPN6 1271 aaKnown RBP18.24■□□□□ 0.51
PRPF39-204ENST00000553605 TRIM17Q9Y577 477 aa18.24■□□□□ 0.51
PRPF39-204ENST00000553605 AIMP1Q12904 312 aaKnown RBP18.23■□□□□ 0.51
PRPF39-204ENST00000553605 PROSER3Q2NL68 480 aa18.23■□□□□ 0.51
PRPF39-204ENST00000553605 RSBN1LQ6PCB5 846 aaPredicted RBP18.23■□□□□ 0.51
PRPF39-204ENST00000553605 COPS6Q7L5N1 327 aa18.23■□□□□ 0.51
PRPF39-204ENST00000553605 MYOZ2Q9NPC6 264 aa18.23■□□□□ 0.51
PRPF39-204ENST00000553605 COLQQ9Y215 455 aaPredicted RBP18.23■□□□□ 0.51
PRPF39-204ENST00000553605 SF3B3Q15393 1217 aaKnown RBP18.22■□□□□ 0.51
PRPF39-204ENST00000553605 NECTIN2Q92692 538 aa18.22■□□□□ 0.51
PRPF39-204ENST00000553605 ZNF428Q96B54 188 aa18.22■□□□□ 0.51
PRPF39-204ENST00000553605 DDX60Q8IY21 1712 aaKnown RBP18.22■□□□□ 0.51
PRPF39-204ENST00000553605 HTTP42858 3142 aa18.22■□□□□ 0.51
PRPF39-204ENST00000553605 SCN9AQ15858 1988 aa18.21■□□□□ 0.51
PRPF39-204ENST00000553605 ALDH1A1P00352 501 aa18.21■□□□□ 0.51
PRPF39-204ENST00000553605 NEFMP07197 916 aa18.21■□□□□ 0.51
PRPF39-204ENST00000553605 USP17L8P0C7I0 530 aa18.21■□□□□ 0.51
PRPF39-204ENST00000553605 EN2P19622 333 aaPredicted RBP18.21■□□□□ 0.51
PRPF39-204ENST00000553605 OTOP1Q7RTM1 612 aa18.21■□□□□ 0.51
PRPF39-204ENST00000553605 CENPFP49454 3210 aa18.21■□□□□ 0.51
PRPF39-204ENST00000553605 XAGE3Q8WTP9 111 aa18.2■□□□□ 0.5
PRPF39-204ENST00000553605 ZNF609O15014 1411 aa18.2■□□□□ 0.5
PRPF39-204ENST00000553605 NF2P35240 595 aa18.19■□□□□ 0.5
PRPF39-204ENST00000553605 RPS8P62241 208 aaKnown RBP18.19■□□□□ 0.5
PRPF39-204ENST00000553605 GMLQ99445 158 aa18.19■□□□□ 0.5
PRPF39-204ENST00000553605 PODXL2Q9NZ53 605 aa18.19■□□□□ 0.5
PRPF39-204ENST00000553605 PTPN12Q05209 780 aaKnown RBP18.18■□□□□ 0.5
PRPF39-204ENST00000553605 FAM89AQ96GI7 184 aa18.18■□□□□ 0.5
PRPF39-204ENST00000553605 TSPYL4Q9UJ04 414 aa18.18■□□□□ 0.5
PRPF39-204ENST00000553605 PTPN22Q9Y2R2 807 aa18.18■□□□□ 0.5
PRPF39-204ENST00000553605 BRCA2P51587 3418 aa18.17■□□□□ 0.5
PRPF39-204ENST00000553605 UFL1O94874 794 aa18.17■□□□□ 0.5
PRPF39-204ENST00000553605 NBPF9Q3BBW0 867 aa18.17■□□□□ 0.5
PRPF39-204ENST00000553605 ARMC9Q7Z3E5 817 aa18.17■□□□□ 0.5
PRPF39-204ENST00000553605 ANKIB1Q9P2G1 1089 aa18.17■□□□□ 0.5
PRPF39-204ENST00000553605 DLG5Q8TDM6 1919 aa18.16■□□□□ 0.5
PRPF39-204ENST00000553605 DLL1O00548 723 aa18.16■□□□□ 0.5
PRPF39-204ENST00000553605 PPP2R1AP30153 589 aa18.16■□□□□ 0.5
PRPF39-204ENST00000553605 INHBEP58166 350 aa18.16■□□□□ 0.5
PRPF39-204ENST00000553605 SPRYD7Q5W111 196 aa18.16■□□□□ 0.5
PRPF39-204ENST00000553605 ARMC5Q96C12 935 aa18.16■□□□□ 0.5
PRPF39-204ENST00000553605 PCGF6Q9BYE7 350 aa18.16■□□□□ 0.5
PRPF39-204ENST00000553605 GGA1Q9UJY5 639 aa18.16■□□□□ 0.5
PRPF39-204ENST00000553605 COL4A1P02462 1669 aa18.15■□□□□ 0.5
PRPF39-204ENST00000553605 RBBP6Q7Z6E9 1792 aaKnown RBP18.15■□□□□ 0.5
PRPF39-204ENST00000553605 SZT2Q5T011 3432 aa18.15■□□□□ 0.5
PRPF39-204ENST00000553605 USP17L3A6NCW0 530 aa18.15■□□□□ 0.5
PRPF39-204ENST00000553605 USP17L4A6NCW7 530 aa18.15■□□□□ 0.5
PRPF39-204ENST00000553605 TRIM26Q12899 539 aaPredicted RBP18.15■□□□□ 0.5
PRPF39-204ENST00000553605 PRKG1Q13976 671 aa18.15■□□□□ 0.5
PRPF39-204ENST00000553605 NFE2L2Q16236 605 aa18.15■□□□□ 0.5
PRPF39-204ENST00000553605 USP17L1Q7RTZ2 530 aa18.15■□□□□ 0.5
PRPF39-204ENST00000553605 IFNL1Q8IU54 200 aa18.15■□□□□ 0.5
PRPF39-204ENST00000553605 ERO1AQ96HE7 468 aa18.15■□□□□ 0.5
PRPF39-204ENST00000553605 MANSC4A6NHS7 340 aaPredicted RBP18.14■□□□□ 0.49
PRPF39-204ENST00000553605 LDLRAD1Q5T700 205 aa18.14■□□□□ 0.49
PRPF39-204ENST00000553605 TMEM106CQ9BVX2 250 aa18.14■□□□□ 0.49
PRPF39-204ENST00000553605 KIAA0100Q14667 2235 aaKnown RBP18.14■□□□□ 0.49
PRPF39-204ENST00000553605 RTL5Q5HYW3 569 aaPredicted RBP18.13■□□□□ 0.49
PRPF39-204ENST00000553605 PODNQ7Z5L7 613 aa18.13■□□□□ 0.49
PRPF39-204ENST00000553605 PLEKHF1Q96S99 279 aa18.13■□□□□ 0.49
PRPF39-204ENST00000553605 WNT10BO00744 389 aa18.12■□□□□ 0.49
PRPF39-204ENST00000553605 IRS4O14654 1257 aaPredicted RBP18.12■□□□□ 0.49
PRPF39-204ENST00000553605 OGFOD1Q8N543 542 aa18.12■□□□□ 0.49
PRPF39-204ENST00000553605 CD99L2Q8TCZ2 262 aa18.12■□□□□ 0.49
PRPF39-204ENST00000553605 OTUD5Q96G74 571 aa18.12■□□□□ 0.49
PRPF39-204ENST00000553605 ISCA1Q9BUE6 129 aa18.12■□□□□ 0.49
PRPF39-204ENST00000553605 EFCC1Q9HA90 598 aa18.12■□□□□ 0.49
PRPF39-204ENST00000553605 ATP5J2-PTCD1G3V325 749 aa18.11■□□□□ 0.49
PRPF39-204ENST00000553605 SLC17A8Q8NDX2 589 aa18.11■□□□□ 0.49
PRPF39-204ENST00000553605 PLBD2Q8NHP8 589 aa18.11■□□□□ 0.49
PRPF39-204ENST00000553605 SLC10A4Q96EP9 437 aa18.11■□□□□ 0.49
PRPF39-204ENST00000553605 SEC31BQ9NQW1 1179 aa18.11■□□□□ 0.49
PRPF39-204ENST00000553605 ANGEL1Q9UNK9 670 aaKnown RBP18.11■□□□□ 0.49
PRPF39-204ENST00000553605 H0YGN5 161 aa18.1■□□□□ 0.49
PRPF39-204ENST00000553605 IGF2BP3O00425 579 aaKnown RBP eCLIP18.1■□□□□ 0.49
PRPF39-204ENST00000553605 ANKRD13DQ6ZTN6 518 aa18.1■□□□□ 0.49
PRPF39-204ENST00000553605 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.1■□□□□ 0.49
PRPF39-204ENST00000553605 PSME4Q14997 1843 aa18.09■□□□□ 0.49
PRPF39-204ENST00000553605 BABAM1Q9NWV8 329 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms