RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 SLC24A3Q9HC58 644 aa9.94□□□□□ -0.82
ATXN3-219ENST00000553488 COL3A1P02461 1466 aaPredicted RBP9.93□□□□□ -0.82
ATXN3-219ENST00000553488 LTBP3Q9NS15 1303 aa9.93□□□□□ -0.82
ATXN3-219ENST00000553488 SSTR3P32745 418 aaPredicted RBP9.93□□□□□ -0.82
ATXN3-219ENST00000553488 EIF5P55010 431 aaKnown RBP9.93□□□□□ -0.82
ATXN3-219ENST00000553488 PARP9Q8IXQ6 854 aa9.93□□□□□ -0.82
ATXN3-219ENST00000553488 TIMELESSQ9UNS1 1208 aa9.93□□□□□ -0.82
ATXN3-219ENST00000553488 SALL2Q9Y467 1007 aaPredicted RBP9.93□□□□□ -0.82
ATXN3-219ENST00000553488 H0YIN7 160 aa9.92□□□□□ -0.82
ATXN3-219ENST00000553488 KDM4AO75164 1064 aa9.92□□□□□ -0.82
ATXN3-219ENST00000553488 GIGYF2Q6Y7W6 1299 aaKnown RBP9.92□□□□□ -0.82
ATXN3-219ENST00000553488 MORC1Q86VD1 984 aa9.92□□□□□ -0.82
ATXN3-219ENST00000553488 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.92□□□□□ -0.82
ATXN3-219ENST00000553488 SLC27A5Q9Y2P5 690 aa9.92□□□□□ -0.82
ATXN3-219ENST00000553488 THSD7BQ9C0I4 1608 aa9.92□□□□□ -0.82
ATXN3-219ENST00000553488 CNTNAP1P78357 1384 aa9.91□□□□□ -0.82
ATXN3-219ENST00000553488 ADH1BP00325 375 aa9.91□□□□□ -0.82
ATXN3-219ENST00000553488 HSPA5P11021 654 aaKnown RBP9.91□□□□□ -0.82
ATXN3-219ENST00000553488 TBC1D9BQ66K14 1250 aa9.91□□□□□ -0.82
ATXN3-219ENST00000553488 PRR5LQ6MZQ0 368 aa9.91□□□□□ -0.82
ATXN3-219ENST00000553488 PASKQ96RG2 1323 aa9.9□□□□□ -0.82
ATXN3-219ENST00000553488 C21orf2O43822 256 aa9.9□□□□□ -0.82
ATXN3-219ENST00000553488 CANXP27824 592 aaKnown RBP9.9□□□□□ -0.82
ATXN3-219ENST00000553488 USP46P62068 366 aa9.9□□□□□ -0.82
ATXN3-219ENST00000553488 MTHFSDQ2M296 383 aaKnown RBP9.9□□□□□ -0.82
ATXN3-219ENST00000553488 ERFEQ4G0M1 354 aa9.9□□□□□ -0.82
ATXN3-219ENST00000553488 BICDL1Q6ZP65 573 aa9.9□□□□□ -0.82
ATXN3-219ENST00000553488 BRIP1Q9BX63 1249 aa9.9□□□□□ -0.82
ATXN3-219ENST00000553488 HEG1Q9ULI3 1381 aa9.89□□□□□ -0.83
ATXN3-219ENST00000553488 FOXN1O15353 648 aa9.89□□□□□ -0.83
ATXN3-219ENST00000553488 HMOX1P09601 288 aa9.89□□□□□ -0.83
ATXN3-219ENST00000553488 TTLL12Q14166 644 aaPredicted RBP9.89□□□□□ -0.83
ATXN3-219ENST00000553488 BRICD5Q6PL45 260 aa9.89□□□□□ -0.83
ATXN3-219ENST00000553488 TAOK3Q9H2K8 898 aa9.89□□□□□ -0.83
ATXN3-219ENST00000553488 MKRN1Q9UHC7 482 aaKnown RBP9.89□□□□□ -0.83
ATXN3-219ENST00000553488 PDZRN3Q9UPQ7 1066 aa9.89□□□□□ -0.83
ATXN3-219ENST00000553488 LAMB4A4D0S4 1761 aa9.88□□□□□ -0.83
ATXN3-219ENST00000553488 A0A087WZG4 1122 aa9.88□□□□□ -0.83
ATXN3-219ENST00000553488 HOXA2O43364 376 aa9.88□□□□□ -0.83
ATXN3-219ENST00000553488 DDNO94850 711 aaPredicted RBP9.88□□□□□ -0.83
ATXN3-219ENST00000553488 PDE6BP35913 854 aa9.88□□□□□ -0.83
ATXN3-219ENST00000553488 EIF4G2P78344 907 aaKnown RBP eCLIP9.88□□□□□ -0.83
ATXN3-219ENST00000553488 PDE4DQ08499 809 aa9.88□□□□□ -0.83
ATXN3-219ENST00000553488 CCDC24Q8N4L8 307 aa9.88□□□□□ -0.83
ATXN3-219ENST00000553488 ZNF622Q969S3 477 aaKnown RBP eCLIP9.88□□□□□ -0.83
ATXN3-219ENST00000553488 ZNF496Q96IT1 587 aaPredicted RBP9.88□□□□□ -0.83
ATXN3-219ENST00000553488 SNED1Q8TER0 1413 aa9.88□□□□□ -0.83
ATXN3-219ENST00000553488 LTBP1Q14766 1721 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 CLSPNQ9HAW4 1339 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 RNF223E7ERA6 249 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 CAMTA2O94983 1202 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 STARD3NLO95772 234 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 SRGNP10124 158 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 MS4A1P11836 297 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 IL6STP40189 918 aaPredicted RBP9.87□□□□□ -0.83
ATXN3-219ENST00000553488 GRIPAP1Q4V328 841 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 PRPF40BQ6NWY9 871 aaKnown RBP9.87□□□□□ -0.83
ATXN3-219ENST00000553488 SPSB2Q99619 263 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 TBC1D2BQ9UPU7 963 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 TRPM7Q96QT4 1865 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 CEMIPQ8WUJ3 1361 aa9.87□□□□□ -0.83
ATXN3-219ENST00000553488 STYK1Q6J9G0 422 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 ZNF790Q6PG37 636 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 RNF19BQ6ZMZ0 732 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 LDHDQ86WU2 507 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 TTC5Q8N0Z6 440 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 FAM160A2Q8N612 972 aaPredicted RBP9.86□□□□□ -0.83
ATXN3-219ENST00000553488 CNBD1Q8NA66 436 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 C7orf43Q8WVR3 580 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 HLA-CQ95604 372 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 CNKSR1Q969H4 720 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 TAF1DQ9H5J8 278 aaPredicted RBP9.86□□□□□ -0.83
ATXN3-219ENST00000553488 PRDM10Q9NQV6 1147 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 KNSTRNQ9Y448 316 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 COL4A5P29400 1685 aa9.86□□□□□ -0.83
ATXN3-219ENST00000553488 TNRC18O15417 2968 aaPredicted RBP9.86□□□□□ -0.83
ATXN3-219ENST00000553488 ZNF541Q9H0D2 1346 aa9.85□□□□□ -0.83
ATXN3-219ENST00000553488 NUP98P52948 1817 aa9.85□□□□□ -0.83
ATXN3-219ENST00000553488 IQCA1LA6NCM1 817 aa9.85□□□□□ -0.83
ATXN3-219ENST00000553488 S1PR4O95977 384 aa9.85□□□□□ -0.83
ATXN3-219ENST00000553488 GGCXP38435 758 aa9.85□□□□□ -0.83
ATXN3-219ENST00000553488 IL17REQ8NFR9 667 aa9.85□□□□□ -0.83
ATXN3-219ENST00000553488 EMID1Q96A84 441 aaPredicted RBP9.85□□□□□ -0.83
ATXN3-219ENST00000553488 DIAPH1O60610 1272 aaKnown RBP9.84□□□□□ -0.83
ATXN3-219ENST00000553488 FMNL1O95466 1100 aaPredicted RBP9.84□□□□□ -0.83
ATXN3-219ENST00000553488 VEGFBP49765 207 aa9.84□□□□□ -0.83
ATXN3-219ENST00000553488 SOGA3Q5TF21 947 aa9.84□□□□□ -0.83
ATXN3-219ENST00000553488 ANKLE1Q8NAG6 615 aa9.84□□□□□ -0.83
ATXN3-219ENST00000553488 SPIRE2Q8WWL2 714 aa9.84□□□□□ -0.83
ATXN3-219ENST00000553488 MASTLQ96GX5 879 aa9.84□□□□□ -0.83
ATXN3-219ENST00000553488 TEX13AQ9BXU3 409 aaPredicted RBP9.84□□□□□ -0.83
ATXN3-219ENST00000553488 SLC6A16Q9GZN6 736 aa9.84□□□□□ -0.83
ATXN3-219ENST00000553488 KIF7Q2M1P5 1343 aa9.83□□□□□ -0.84
ATXN3-219ENST00000553488 KLRG2A4D1S0 409 aaPredicted RBP9.83□□□□□ -0.84
ATXN3-219ENST00000553488 TMEM88BA6NKF7 163 aa9.83□□□□□ -0.84
ATXN3-219ENST00000553488 A1BGP04217 495 aa9.83□□□□□ -0.84
ATXN3-219ENST00000553488 CTCFP49711 727 aaPredicted RBP9.83□□□□□ -0.84
ATXN3-219ENST00000553488 ST5P78524 1137 aa9.83□□□□□ -0.84
ATXN3-219ENST00000553488 TRIM26Q12899 539 aaPredicted RBP9.83□□□□□ -0.84
ATXN3-219ENST00000553488 CCDC93Q567U6 631 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms