RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 WASHC4Q2M389 1173 aa24.45■■□□□ 1.5
PTCH1-227ENST00000553256 SMC4Q9NTJ3 1288 aa24.45■■□□□ 1.5
PTCH1-227ENST00000553256 HNRNPUQ00839 825 aaKnown RBP eCLIP24.44■■□□□ 1.5
PTCH1-227ENST00000553256 C16orf71Q8IYS4 520 aaPredicted RBP24.44■■□□□ 1.5
PTCH1-227ENST00000553256 SMC1BQ8NDV3 1235 aa24.44■■□□□ 1.5
PTCH1-227ENST00000553256 XDHP47989 1333 aa24.43■■□□□ 1.5
PTCH1-227ENST00000553256 SUCLG2Q96I99 432 aa24.43■■□□□ 1.5
PTCH1-227ENST00000553256 USP44Q9H0E7 712 aa24.43■■□□□ 1.5
PTCH1-227ENST00000553256 HACL1Q9UJ83 578 aa24.43■■□□□ 1.5
PTCH1-227ENST00000553256 RABL6Q3YEC7 729 aaPredicted RBP24.42■■□□□ 1.5
PTCH1-227ENST00000553256 LMBR1LQ6UX01 489 aa24.42■■□□□ 1.5
PTCH1-227ENST00000553256 GGA1Q9UJY5 639 aa24.42■■□□□ 1.5
PTCH1-227ENST00000553256 NOB1Q9ULX3 412 aaKnown RBP24.42■■□□□ 1.5
PTCH1-227ENST00000553256 ZBED9Q6R2W3 1325 aa24.41■■□□□ 1.5
PTCH1-227ENST00000553256 IRS2Q9Y4H2 1338 aa24.41■■□□□ 1.5
PTCH1-227ENST00000553256 C6orf229H3BNL8 230 aa24.41■■□□□ 1.5
PTCH1-227ENST00000553256 EPHX2P34913 555 aa24.41■■□□□ 1.5
PTCH1-227ENST00000553256 KCNQ5Q9NR82 932 aa24.41■■□□□ 1.5
PTCH1-227ENST00000553256 C9orf78Q9NZ63 289 aaPredicted RBP24.41■■□□□ 1.5
PTCH1-227ENST00000553256 UFL1O94874 794 aa24.4■■□□□ 1.5
PTCH1-227ENST00000553256 EPS15P42566 896 aa24.4■■□□□ 1.5
PTCH1-227ENST00000553256 ANKRD44Q8N8A2 993 aa24.4■■□□□ 1.5
PTCH1-227ENST00000553256 EYA3Q99504 573 aa24.4■■□□□ 1.5
PTCH1-227ENST00000553256 DBNDD1Q9H9R9 158 aa24.4■■□□□ 1.5
PTCH1-227ENST00000553256 ANKIB1Q9P2G1 1089 aa24.4■■□□□ 1.5
PTCH1-227ENST00000553256 GJA3Q9Y6H8 435 aa24.4■■□□□ 1.5
PTCH1-227ENST00000553256 SPEF2Q9C093 1822 aa24.4■■□□□ 1.5
PTCH1-227ENST00000553256 SCN9AQ15858 1988 aa24.4■■□□□ 1.5
PTCH1-227ENST00000553256 RIMBP2O15034 1052 aa24.39■■□□□ 1.49
PTCH1-227ENST00000553256 RAD17O75943 681 aa24.39■■□□□ 1.49
PTCH1-227ENST00000553256 ATP2B4P23634 1241 aa24.39■■□□□ 1.49
PTCH1-227ENST00000553256 CIAPIN1Q6FI81 312 aa24.39■■□□□ 1.49
PTCH1-227ENST00000553256 ARHGAP45Q92619 1136 aa24.39■■□□□ 1.49
PTCH1-227ENST00000553256 GPRC5DQ9NZD1 345 aa24.39■■□□□ 1.49
PTCH1-227ENST00000553256 ANKRD18BA2A2Z9 1011 aa24.38■■□□□ 1.49
PTCH1-227ENST00000553256 IGHMBP2P38935 993 aaKnown RBP24.38■■□□□ 1.49
PTCH1-227ENST00000553256 CHADLQ6NUI6 762 aa24.38■■□□□ 1.49
PTCH1-227ENST00000553256 LDHDQ86WU2 507 aa24.38■■□□□ 1.49
PTCH1-227ENST00000553256 ECE2O60344 883 aa24.37■■□□□ 1.49
PTCH1-227ENST00000553256 CCT4P50991 539 aaKnown RBP24.37■■□□□ 1.49
PTCH1-227ENST00000553256 IFIT5Q13325 482 aaKnown RBP24.37■■□□□ 1.49
PTCH1-227ENST00000553256 DOK7Q18PE1 504 aa24.37■■□□□ 1.49
PTCH1-227ENST00000553256 DNAJC5GQ8N7S2 189 aa24.37■■□□□ 1.49
PTCH1-227ENST00000553256 MED23Q9ULK4 1368 aa24.37■■□□□ 1.49
PTCH1-227ENST00000553256 ZNF609O15014 1411 aa24.36■■□□□ 1.49
PTCH1-227ENST00000553256 ITGBL1O95965 494 aaPredicted RBP24.36■■□□□ 1.49
PTCH1-227ENST00000553256 GMPSP49915 693 aaPredicted RBP24.36■■□□□ 1.49
PTCH1-227ENST00000553256 TXNRD3Q86VQ6 643 aa24.36■■□□□ 1.49
PTCH1-227ENST00000553256 ZC3H12CQ9C0D7 883 aaKnown RBP24.36■■□□□ 1.49
PTCH1-227ENST00000553256 BICC1Q9H694 974 aaKnown RBP24.36■■□□□ 1.49
PTCH1-227ENST00000553256 A0A1B0GUL6 1792 aa24.36■■□□□ 1.49
PTCH1-227ENST00000553256 PASKQ96RG2 1323 aa24.35■■□□□ 1.49
PTCH1-227ENST00000553256 PSMD14O00487 310 aa24.35■■□□□ 1.49
PTCH1-227ENST00000553256 APLP1P51693 650 aa24.35■■□□□ 1.49
PTCH1-227ENST00000553256 CHRNDQ07001 517 aa24.35■■□□□ 1.49
PTCH1-227ENST00000553256 TNIP1Q15025 636 aa24.35■■□□□ 1.49
PTCH1-227ENST00000553256 ZNF594Q96JF6 807 aaPredicted RBP24.35■■□□□ 1.49
PTCH1-227ENST00000553256 LEMD3Q9Y2U8 911 aa24.35■■□□□ 1.49
PTCH1-227ENST00000553256 ZNF646O15015 1829 aaPredicted RBP24.34■■□□□ 1.49
PTCH1-227ENST00000553256 BCAR3O75815 825 aa24.34■■□□□ 1.49
PTCH1-227ENST00000553256 KLRK1P26718 216 aa24.34■■□□□ 1.49
PTCH1-227ENST00000553256 PNMA8AQ86V59 439 aaPredicted RBP24.34■■□□□ 1.49
PTCH1-227ENST00000553256 API5Q9BZZ5 524 aaKnown RBP24.34■■□□□ 1.49
PTCH1-227ENST00000553256 SHTN1A0MZ66 631 aa24.33■■□□□ 1.49
PTCH1-227ENST00000553256 VIL1P09327 827 aaKnown RBP24.33■■□□□ 1.49
PTCH1-227ENST00000553256 DPF2Q92785 391 aa24.33■■□□□ 1.49
PTCH1-227ENST00000553256 MPHOSPH8Q99549 860 aa24.33■■□□□ 1.49
PTCH1-227ENST00000553256 ANKRD2Q9GZV1 360 aa24.33■■□□□ 1.49
PTCH1-227ENST00000553256 KIF16BQ96L93 1317 aa24.33■■□□□ 1.48
PTCH1-227ENST00000553256 SNAP23O00161 211 aa24.32■■□□□ 1.48
PTCH1-227ENST00000553256 INTS3Q68E01 1043 aaKnown RBP24.32■■□□□ 1.48
PTCH1-227ENST00000553256 C15orf52Q6ZUT6 534 aaKnown RBP24.32■■□□□ 1.48
PTCH1-227ENST00000553256 TNNQ9UQP3 1299 aa24.32■■□□□ 1.48
PTCH1-227ENST00000553256 ZBTB12Q9Y330 459 aaPredicted RBP24.32■■□□□ 1.48
PTCH1-227ENST00000553256 PSME4Q14997 1843 aa24.32■■□□□ 1.48
PTCH1-227ENST00000553256 ZNF804BA4D1E1 1349 aa24.32■■□□□ 1.48
PTCH1-227ENST00000553256 RFX5P48382 616 aaPredicted RBP24.31■■□□□ 1.48
PTCH1-227ENST00000553256 HIRAP54198 1017 aaPredicted RBP24.31■■□□□ 1.48
PTCH1-227ENST00000553256 HTRA3P83110 453 aa24.31■■□□□ 1.48
PTCH1-227ENST00000553256 CCDC57Q2TAC2 916 aa24.31■■□□□ 1.48
PTCH1-227ENST00000553256 USP50Q70EL3 339 aaPredicted RBP24.31■■□□□ 1.48
PTCH1-227ENST00000553256 GMLQ99445 158 aa24.31■■□□□ 1.48
PTCH1-227ENST00000553256 PGAP2Q9UHJ9 254 aa24.31■■□□□ 1.48
PTCH1-227ENST00000553256 TRIM27P14373 513 aa24.3■■□□□ 1.48
PTCH1-227ENST00000553256 LMOD1P29536 600 aaPredicted RBP24.3■■□□□ 1.48
PTCH1-227ENST00000553256 PODNQ7Z5L7 613 aa24.3■■□□□ 1.48
PTCH1-227ENST00000553256 PUS3Q9BZE2 481 aaKnown RBP24.3■■□□□ 1.48
PTCH1-227ENST00000553256 ADARB2Q9NS39 739 aaKnown RBP24.3■■□□□ 1.48
PTCH1-227ENST00000553256 RIPOR2Q9Y4F9 1068 aa24.3■■□□□ 1.48
PTCH1-227ENST00000553256 EAPPQ56P03 285 aaPredicted RBP24.29■■□□□ 1.48
PTCH1-227ENST00000553256 CHMP3Q9Y3E7 222 aa24.29■■□□□ 1.48
PTCH1-227ENST00000553256 TAF5LO75529 589 aa24.28■■□□□ 1.48
PTCH1-227ENST00000553256 RPS12P25398 132 aaKnown RBP24.28■■□□□ 1.48
PTCH1-227ENST00000553256 LDHAL6AQ6ZMR3 332 aa24.28■■□□□ 1.48
PTCH1-227ENST00000553256 HELBQ8NG08 1087 aaPredicted RBP24.28■■□□□ 1.48
PTCH1-227ENST00000553256 TRPM4Q8TD43 1214 aa24.28■■□□□ 1.48
PTCH1-227ENST00000553256 CNOT7Q9UIV1 285 aaKnown RBP24.28■■□□□ 1.48
PTCH1-227ENST00000553256 EGFRP00533 1210 aa24.27■■□□□ 1.48
PTCH1-227ENST00000553256 MAP1SQ66K74 1059 aaPredicted RBP24.27■■□□□ 1.48
PTCH1-227ENST00000553256 COA1Q9GZY4 146 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms