RNA–Protein interactions for RNA: ENST00000551981.5

CHMP1A-210, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 689 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-210ENST00000551981 TRIM28Q13263 835 aaKnown RBP18.44■□□□□ 0.54
CHMP1A-210ENST00000551981 RTL5Q5HYW3 569 aaPredicted RBP18.44■□□□□ 0.54
CHMP1A-210ENST00000551981 DCAF8Q5TAQ9 597 aa18.44■□□□□ 0.54
CHMP1A-210ENST00000551981 TBC1D16Q8TBP0 767 aa18.44■□□□□ 0.54
CHMP1A-210ENST00000551981 RUNDC1Q96C34 613 aa18.44■□□□□ 0.54
CHMP1A-210ENST00000551981 ZIC5Q96T25 663 aa18.44■□□□□ 0.54
CHMP1A-210ENST00000551981 ZC3H12CQ9C0D7 883 aaKnown RBP18.44■□□□□ 0.54
CHMP1A-210ENST00000551981 RTL9Q8NET4 1388 aa18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 AKAP11Q9UKA4 1901 aa18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 ADM5C9JUS6 153 aa18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 EGFRP00533 1210 aa18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 ZNF157P51786 506 aaPredicted RBP18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 WDR43Q15061 677 aaKnown RBP eCLIP18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 KIF4BQ2VIQ3 1234 aa18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 DLK2Q6UY11 383 aa18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 SULF1Q8IWU6 871 aa18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 TRIM35Q9UPQ4 493 aa18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 MYBBP1AQ9BQG0 1328 aaKnown RBP18.43■□□□□ 0.54
CHMP1A-210ENST00000551981 FAM155AB1AL88 458 aaPredicted RBP18.42■□□□□ 0.54
CHMP1A-210ENST00000551981 KCNQ5Q9NR82 932 aa18.42■□□□□ 0.54
CHMP1A-210ENST00000551981 ANKIB1Q9P2G1 1089 aa18.42■□□□□ 0.54
CHMP1A-210ENST00000551981 COL4A1P02462 1669 aa18.41■□□□□ 0.54
CHMP1A-210ENST00000551981 SCN9AQ15858 1988 aa18.41■□□□□ 0.54
CHMP1A-210ENST00000551981 VIL1P09327 827 aaKnown RBP18.41■□□□□ 0.54
CHMP1A-210ENST00000551981 KIF23Q02241 960 aaPredicted RBP18.41■□□□□ 0.54
CHMP1A-210ENST00000551981 GOLGA2Q08379 1002 aa18.41■□□□□ 0.54
CHMP1A-210ENST00000551981 RIC3Q7Z5B4 369 aa18.41■□□□□ 0.54
CHMP1A-210ENST00000551981 ZBTB38Q8NAP3 1195 aaPredicted RBP18.41■□□□□ 0.54
CHMP1A-210ENST00000551981 GGA3Q9NZ52 723 aa18.41■□□□□ 0.54
CHMP1A-210ENST00000551981 PODXL2Q9NZ53 605 aa18.41■□□□□ 0.54
CHMP1A-210ENST00000551981 UFL1O94874 794 aa18.4■□□□□ 0.54
CHMP1A-210ENST00000551981 DUSP27Q5VZP5 1158 aa18.4■□□□□ 0.54
CHMP1A-210ENST00000551981 GGA1Q9UJY5 639 aa18.4■□□□□ 0.54
CHMP1A-210ENST00000551981 TNRC18O15417 2968 aaPredicted RBP18.4■□□□□ 0.54
CHMP1A-210ENST00000551981 CCDC152Q4G0S7 254 aa18.39■□□□□ 0.53
CHMP1A-210ENST00000551981 PSME4Q14997 1843 aa18.39■□□□□ 0.53
CHMP1A-210ENST00000551981 TRPA1O75762 1119 aa18.38■□□□□ 0.53
CHMP1A-210ENST00000551981 SLC10A3P09131 477 aa18.38■□□□□ 0.53
CHMP1A-210ENST00000551981 REM2Q8IYK8 340 aaPredicted RBP18.38■□□□□ 0.53
CHMP1A-210ENST00000551981 AGBL3Q8NEM8 1001 aa18.38■□□□□ 0.53
CHMP1A-210ENST00000551981 CDCA5Q96FF9 252 aa18.38■□□□□ 0.53
CHMP1A-210ENST00000551981 SEC31BQ9NQW1 1179 aa18.38■□□□□ 0.53
CHMP1A-210ENST00000551981 RNF186Q9NXI6 227 aa18.38■□□□□ 0.53
CHMP1A-210ENST00000551981 ZNF609O15014 1411 aa18.38■□□□□ 0.53
CHMP1A-210ENST00000551981 ZNF280AP59817 542 aaPredicted RBP18.37■□□□□ 0.53
CHMP1A-210ENST00000551981 RSBN1LQ6PCB5 846 aaPredicted RBP18.37■□□□□ 0.53
CHMP1A-210ENST00000551981 MBIPQ9NS73 344 aa18.37■□□□□ 0.53
CHMP1A-210ENST00000551981 PDE4DIPQ5VU43 2346 aa18.37■□□□□ 0.53
CHMP1A-210ENST00000551981 FKBP1BP68106 108 aa18.36■□□□□ 0.53
CHMP1A-210ENST00000551981 ANGEL2Q5VTE6 544 aaKnown RBP18.36■□□□□ 0.53
CHMP1A-210ENST00000551981 CCDC191Q8NCU4 936 aa18.36■□□□□ 0.53
CHMP1A-210ENST00000551981 MYD88Q99836 296 aa18.36■□□□□ 0.53
CHMP1A-210ENST00000551981 ASTN2O75129 1339 aaPredicted RBP18.35■□□□□ 0.53
CHMP1A-210ENST00000551981 XDHP47989 1333 aa18.35■□□□□ 0.53
CHMP1A-210ENST00000551981 PDE8AO60658 829 aa18.35■□□□□ 0.53
CHMP1A-210ENST00000551981 PCCAP05165 728 aaPredicted RBP18.35■□□□□ 0.53
CHMP1A-210ENST00000551981 SCARF1Q14162 830 aa18.35■□□□□ 0.53
CHMP1A-210ENST00000551981 CSRNP1Q96S65 589 aa18.35■□□□□ 0.53
CHMP1A-210ENST00000551981 CWC25Q9NXE8 425 aaPredicted RBP18.35■□□□□ 0.53
CHMP1A-210ENST00000551981 PAPPA2Q9BXP8 1791 aa18.35■□□□□ 0.53
CHMP1A-210ENST00000551981 USP17L8P0C7I0 530 aa18.34■□□□□ 0.53
CHMP1A-210ENST00000551981 CALD1Q05682 793 aaKnown RBP18.34■□□□□ 0.53
CHMP1A-210ENST00000551981 ANKRD18AQ8IVF6 992 aa18.34■□□□□ 0.53
CHMP1A-210ENST00000551981 CHMP4AQ9BY43 222 aa18.34■□□□□ 0.53
CHMP1A-210ENST00000551981 PHAXQ9H814 394 aaKnown RBP18.34■□□□□ 0.53
CHMP1A-210ENST00000551981 ADAMTS8Q9UP79 889 aa18.34■□□□□ 0.53
CHMP1A-210ENST00000551981 PITPNM2Q9BZ72 1349 aa18.33■□□□□ 0.53
CHMP1A-210ENST00000551981 DDX58O95786 925 aaKnown RBP18.33■□□□□ 0.52
CHMP1A-210ENST00000551981 GNAI1P63096 354 aa18.33■□□□□ 0.52
CHMP1A-210ENST00000551981 RASAL3Q86YV0 1011 aa18.33■□□□□ 0.52
CHMP1A-210ENST00000551981 MYOZ2Q9NPC6 264 aa18.33■□□□□ 0.52
CHMP1A-210ENST00000551981 IFT57Q9NWB7 429 aa18.33■□□□□ 0.52
CHMP1A-210ENST00000551981 USP17L3A6NCW0 530 aa18.32■□□□□ 0.52
CHMP1A-210ENST00000551981 USP17L4A6NCW7 530 aa18.32■□□□□ 0.52
CHMP1A-210ENST00000551981 ATP2B4P23634 1241 aa18.32■□□□□ 0.52
CHMP1A-210ENST00000551981 USP17L1Q7RTZ2 530 aa18.32■□□□□ 0.52
CHMP1A-210ENST00000551981 PODNQ7Z5L7 613 aa18.32■□□□□ 0.52
CHMP1A-210ENST00000551981 CTU1Q7Z7A3 348 aaKnown RBP18.32■□□□□ 0.52
CHMP1A-210ENST00000551981 CCDC85AQ96PX6 553 aaPredicted RBP18.32■□□□□ 0.52
CHMP1A-210ENST00000551981 ZNF853P0CG23 659 aa18.31■□□□□ 0.52
CHMP1A-210ENST00000551981 GMLQ99445 158 aa18.31■□□□□ 0.52
CHMP1A-210ENST00000551981 CDC5LQ99459 802 aaKnown RBP18.31■□□□□ 0.52
CHMP1A-210ENST00000551981 MYH3P11055 1940 aa18.3■□□□□ 0.52
CHMP1A-210ENST00000551981 ELL2O00472 640 aaPredicted RBP18.3■□□□□ 0.52
CHMP1A-210ENST00000551981 SOX10P56693 466 aa18.3■□□□□ 0.52
CHMP1A-210ENST00000551981 DDX10Q13206 875 aaKnown RBP18.3■□□□□ 0.52
CHMP1A-210ENST00000551981 METTL22Q9BUU2 404 aaPredicted RBP18.3■□□□□ 0.52
CHMP1A-210ENST00000551981 SPEF2Q9C093 1822 aa18.29■□□□□ 0.52
CHMP1A-210ENST00000551981 JARID2Q92833 1246 aaPredicted RBP18.29■□□□□ 0.52
CHMP1A-210ENST00000551981 MED23Q9ULK4 1368 aa18.29■□□□□ 0.52
CHMP1A-210ENST00000551981 CTSWP56202 376 aa18.28■□□□□ 0.52
CHMP1A-210ENST00000551981 CCDC30Q5VVM6 783 aa18.28■□□□□ 0.52
CHMP1A-210ENST00000551981 OGFOD1Q8N543 542 aa18.28■□□□□ 0.52
CHMP1A-210ENST00000551981 MYO3BQ8WXR4 1341 aa18.27■□□□□ 0.52
CHMP1A-210ENST00000551981 NF2P35240 595 aa18.27■□□□□ 0.52
CHMP1A-210ENST00000551981 TTLL12Q14166 644 aaPredicted RBP18.27■□□□□ 0.52
CHMP1A-210ENST00000551981 MAP3K2Q9Y2U5 619 aa18.27■□□□□ 0.52
CHMP1A-210ENST00000551981 APAF1O14727 1248 aa18.26■□□□□ 0.51
CHMP1A-210ENST00000551981 NEXNQ0ZGT2 675 aa18.26■□□□□ 0.51
CHMP1A-210ENST00000551981 PKN2Q16513 984 aaKnown RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms