RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 PROSER3Q2NL68 480 aa19.19■□□□□ 0.66
VPS29-209ENST00000551655 FKTNO75072 461 aa19.18■□□□□ 0.66
VPS29-209ENST00000551655 NLRP10Q86W26 655 aa19.18■□□□□ 0.66
VPS29-209ENST00000551655 CELF1Q92879 486 aaKnown RBP19.18■□□□□ 0.66
VPS29-209ENST00000551655 COLQQ9Y215 455 aaPredicted RBP19.18■□□□□ 0.66
VPS29-209ENST00000551655 RBBP6Q7Z6E9 1792 aaKnown RBP19.18■□□□□ 0.66
VPS29-209ENST00000551655 HTATSF1O43719 755 aaKnown RBP19.17■□□□□ 0.66
VPS29-209ENST00000551655 TM4SF4P48230 202 aa19.17■□□□□ 0.66
VPS29-209ENST00000551655 VIL1P09327 827 aaKnown RBP19.16■□□□□ 0.66
VPS29-209ENST00000551655 FKBP1BP68106 108 aa19.16■□□□□ 0.66
VPS29-209ENST00000551655 PDIA6Q15084 440 aa19.16■□□□□ 0.66
VPS29-209ENST00000551655 TRMT112Q9UI30 125 aaKnown RBP19.16■□□□□ 0.66
VPS29-209ENST00000551655 EN2P19622 333 aaPredicted RBP19.15■□□□□ 0.66
VPS29-209ENST00000551655 NOM1Q5C9Z4 860 aaKnown RBP19.15■□□□□ 0.66
VPS29-209ENST00000551655 TRIM17Q9Y577 477 aa19.15■□□□□ 0.66
VPS29-209ENST00000551655 ZNF280AP59817 542 aaPredicted RBP19.14■□□□□ 0.65
VPS29-209ENST00000551655 TTLL12Q14166 644 aaPredicted RBP19.14■□□□□ 0.65
VPS29-209ENST00000551655 TBC1D16Q8TBP0 767 aa19.14■□□□□ 0.65
VPS29-209ENST00000551655 CFAP53Q96M91 514 aa19.14■□□□□ 0.65
VPS29-209ENST00000551655 SH3TC1Q8TE82 1336 aa19.14■□□□□ 0.65
VPS29-209ENST00000551655 KIAA0100Q14667 2235 aaKnown RBP19.14■□□□□ 0.65
VPS29-209ENST00000551655 EIF2S2P20042 333 aaKnown RBP19.13■□□□□ 0.65
VPS29-209ENST00000551655 TMC4Q7Z404 712 aa19.13■□□□□ 0.65
VPS29-209ENST00000551655 PNISRQ8TF01 805 aaKnown RBP19.13■□□□□ 0.65
VPS29-209ENST00000551655 NUDCQ9Y266 331 aa19.13■□□□□ 0.65
VPS29-209ENST00000551655 TRIOBPQ9H2D6 2365 aa19.13■□□□□ 0.65
VPS29-209ENST00000551655 ERBB4Q15303 1308 aa19.12■□□□□ 0.65
VPS29-209ENST00000551655 AIMP1Q12904 312 aaKnown RBP19.12■□□□□ 0.65
VPS29-209ENST00000551655 OTOP1Q7RTM1 612 aa19.12■□□□□ 0.65
VPS29-209ENST00000551655 PSME4Q14997 1843 aa19.11■□□□□ 0.65
VPS29-209ENST00000551655 PRKG1Q13976 671 aa19.11■□□□□ 0.65
VPS29-209ENST00000551655 NECTIN2Q92692 538 aa19.11■□□□□ 0.65
VPS29-209ENST00000551655 EYA3Q99504 573 aa19.11■□□□□ 0.65
VPS29-209ENST00000551655 MYOZ2Q9NPC6 264 aa19.11■□□□□ 0.65
VPS29-209ENST00000551655 DLL1O00548 723 aa19.1■□□□□ 0.65
VPS29-209ENST00000551655 PTPN12Q05209 780 aaKnown RBP19.1■□□□□ 0.65
VPS29-209ENST00000551655 RSBN1LQ6PCB5 846 aaPredicted RBP19.1■□□□□ 0.65
VPS29-209ENST00000551655 COPS6Q7L5N1 327 aa19.1■□□□□ 0.65
VPS29-209ENST00000551655 CFHR5Q9BXR6 569 aa19.1■□□□□ 0.65
VPS29-209ENST00000551655 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.1■□□□□ 0.65
VPS29-209ENST00000551655 PITPNM2Q9BZ72 1349 aa19.09■□□□□ 0.65
VPS29-209ENST00000551655 SREBF2Q12772 1141 aa19.09■□□□□ 0.65
VPS29-209ENST00000551655 TCIRG1Q13488 830 aa19.09■□□□□ 0.65
VPS29-209ENST00000551655 NBPF9Q3BBW0 867 aa19.09■□□□□ 0.65
VPS29-209ENST00000551655 INTS3Q68E01 1043 aaKnown RBP19.09■□□□□ 0.65
VPS29-209ENST00000551655 XAGE3Q8WTP9 111 aa19.09■□□□□ 0.65
VPS29-209ENST00000551655 ZC3H12CQ9C0D7 883 aaKnown RBP19.09■□□□□ 0.65
VPS29-209ENST00000551655 FZD1Q9UP38 647 aa19.09■□□□□ 0.65
VPS29-209ENST00000551655 CEP290O15078 2479 aa19.09■□□□□ 0.65
VPS29-209ENST00000551655 RTL5Q5HYW3 569 aaPredicted RBP19.08■□□□□ 0.64
VPS29-209ENST00000551655 FAM89AQ96GI7 184 aa19.08■□□□□ 0.64
VPS29-209ENST00000551655 GMLQ99445 158 aa19.08■□□□□ 0.64
VPS29-209ENST00000551655 G3V3G9 751 aa19.07■□□□□ 0.64
VPS29-209ENST00000551655 UFL1O94874 794 aa19.07■□□□□ 0.64
VPS29-209ENST00000551655 USP17L8P0C7I0 530 aa19.07■□□□□ 0.64
VPS29-209ENST00000551655 CAP1Q01518 475 aa19.07■□□□□ 0.64
VPS29-209ENST00000551655 HSP90AB3PQ58FF7 597 aa19.07■□□□□ 0.64
VPS29-209ENST00000551655 DCAF8Q5TAQ9 597 aa19.07■□□□□ 0.64
VPS29-209ENST00000551655 AGBL3Q8NEM8 1001 aa19.07■□□□□ 0.64
VPS29-209ENST00000551655 ZNF609O15014 1411 aa19.07■□□□□ 0.64
VPS29-209ENST00000551655 SF3B3Q15393 1217 aaKnown RBP19.05■□□□□ 0.64
VPS29-209ENST00000551655 SPRYD7Q5W111 196 aa19.05■□□□□ 0.64
VPS29-209ENST00000551655 CD99L2Q8TCZ2 262 aa19.05■□□□□ 0.64
VPS29-209ENST00000551655 MXD3Q9BW11 206 aa19.05■□□□□ 0.64
VPS29-209ENST00000551655 PTPN22Q9Y2R2 807 aa19.05■□□□□ 0.64
VPS29-209ENST00000551655 RANBP2P49792 3224 aaKnown RBP19.04■□□□□ 0.64
VPS29-209ENST00000551655 H0YGN5 161 aa19.04■□□□□ 0.64
VPS29-209ENST00000551655 ZNF646O15015 1829 aaPredicted RBP19.04■□□□□ 0.64
VPS29-209ENST00000551655 A0A0C4DFX4 3053 aa19.04■□□□□ 0.64
VPS29-209ENST00000551655 COL6A3P12111 3177 aa19.03■□□□□ 0.64
VPS29-209ENST00000551655 ATP5J2-PTCD1G3V325 749 aa19.03■□□□□ 0.64
VPS29-209ENST00000551655 IGF2BP3O00425 579 aaKnown RBP eCLIP19.03■□□□□ 0.64
VPS29-209ENST00000551655 PPP2R1AP30153 589 aa19.03■□□□□ 0.64
VPS29-209ENST00000551655 IFNL1Q8IU54 200 aa19.03■□□□□ 0.64
VPS29-209ENST00000551655 ARMC5Q96C12 935 aa19.03■□□□□ 0.64
VPS29-209ENST00000551655 OTUD5Q96G74 571 aa19.03■□□□□ 0.64
VPS29-209ENST00000551655 PCGF6Q9BYE7 350 aa19.03■□□□□ 0.64
VPS29-209ENST00000551655 SEC31BQ9NQW1 1179 aa19.03■□□□□ 0.64
VPS29-209ENST00000551655 TSPYL4Q9UJ04 414 aa19.03■□□□□ 0.64
VPS29-209ENST00000551655 SASH1O94885 1247 aa19.02■□□□□ 0.64
VPS29-209ENST00000551655 RPS8P62241 208 aaKnown RBP19.02■□□□□ 0.64
VPS29-209ENST00000551655 PODXL2Q9NZ53 605 aa19.02■□□□□ 0.64
VPS29-209ENST00000551655 ANKIB1Q9P2G1 1089 aa19.02■□□□□ 0.64
VPS29-209ENST00000551655 GGA1Q9UJY5 639 aa19.02■□□□□ 0.64
VPS29-209ENST00000551655 WTIPA6NIX2 430 aaPredicted RBP19.01■□□□□ 0.63
VPS29-209ENST00000551655 NF2P35240 595 aa19.01■□□□□ 0.63
VPS29-209ENST00000551655 CHRDL2Q6WN34 429 aa19.01■□□□□ 0.63
VPS29-209ENST00000551655 SLC17A8Q8NDX2 589 aa19.01■□□□□ 0.63
VPS29-209ENST00000551655 ANGEL1Q9UNK9 670 aaKnown RBP19.01■□□□□ 0.63
VPS29-209ENST00000551655 WNT10BO00744 389 aa19■□□□□ 0.63
VPS29-209ENST00000551655 ALDH1A1P00352 501 aa19■□□□□ 0.63
VPS29-209ENST00000551655 MYCP01106 439 aaPredicted RBP19■□□□□ 0.63
VPS29-209ENST00000551655 LDLRAD1Q5T700 205 aa19■□□□□ 0.63
VPS29-209ENST00000551655 ARMC9Q7Z3E5 817 aa19■□□□□ 0.63
VPS29-209ENST00000551655 USP17L3A6NCW0 530 aa18.99■□□□□ 0.63
VPS29-209ENST00000551655 USP17L4A6NCW7 530 aa18.99■□□□□ 0.63
VPS29-209ENST00000551655 NFE2L2Q16236 605 aa18.99■□□□□ 0.63
VPS29-209ENST00000551655 USP17L1Q7RTZ2 530 aa18.99■□□□□ 0.63
VPS29-209ENST00000551655 ERO1AQ96HE7 468 aa18.99■□□□□ 0.63
VPS29-209ENST00000551655 CLMNQ96JQ2 1002 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms