RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 RIMBP2O15034 1052 aa16.61■□□□□ 0.25
PTCH1-221ENST00000550914 AOC2O75106 756 aa16.61■□□□□ 0.25
PTCH1-221ENST00000550914 BRPF1P55201 1214 aaPredicted RBP16.61■□□□□ 0.25
PTCH1-221ENST00000550914 CCDC152Q4G0S7 254 aa16.61■□□□□ 0.25
PTCH1-221ENST00000550914 ZC3H12CQ9C0D7 883 aaKnown RBP16.61■□□□□ 0.25
PTCH1-221ENST00000550914 RTL9Q8NET4 1388 aa16.61■□□□□ 0.25
PTCH1-221ENST00000550914 ZNF609O15014 1411 aa16.61■□□□□ 0.25
PTCH1-221ENST00000550914 PDE8AO60658 829 aa16.6■□□□□ 0.25
PTCH1-221ENST00000550914 DDX58O95786 925 aaKnown RBP16.6■□□□□ 0.25
PTCH1-221ENST00000550914 VIL1P09327 827 aaKnown RBP16.6■□□□□ 0.25
PTCH1-221ENST00000550914 CCDC30Q5VVM6 783 aa16.6■□□□□ 0.25
PTCH1-221ENST00000550914 SAMD7Q7Z3H4 446 aa16.6■□□□□ 0.25
PTCH1-221ENST00000550914 ABHD8Q96I13 439 aa16.6■□□□□ 0.25
PTCH1-221ENST00000550914 MYD88Q99836 296 aa16.6■□□□□ 0.25
PTCH1-221ENST00000550914 ZNF408Q9H9D4 720 aa16.6■□□□□ 0.25
PTCH1-221ENST00000550914 CWC25Q9NXE8 425 aaPredicted RBP16.6■□□□□ 0.25
PTCH1-221ENST00000550914 CASP8AP2Q9UKL3 1982 aa16.6■□□□□ 0.25
PTCH1-221ENST00000550914 NOGQ13253 232 aa16.59■□□□□ 0.25
PTCH1-221ENST00000550914 DOK7Q18PE1 504 aa16.59■□□□□ 0.25
PTCH1-221ENST00000550914 KRT26Q7Z3Y9 468 aa16.59■□□□□ 0.25
PTCH1-221ENST00000550914 USP48Q86UV5 1035 aa16.59■□□□□ 0.25
PTCH1-221ENST00000550914 METTL22Q9BUU2 404 aaPredicted RBP16.59■□□□□ 0.25
PTCH1-221ENST00000550914 ANKIB1Q9P2G1 1089 aa16.59■□□□□ 0.25
PTCH1-221ENST00000550914 GGA1Q9UJY5 639 aa16.59■□□□□ 0.25
PTCH1-221ENST00000550914 CACNA1FO60840 1977 aa16.58■□□□□ 0.25
PTCH1-221ENST00000550914 ELL2O00472 640 aaPredicted RBP16.58■□□□□ 0.24
PTCH1-221ENST00000550914 UFL1O94874 794 aa16.58■□□□□ 0.24
PTCH1-221ENST00000550914 TBC1D10BQ4KMP7 808 aaPredicted RBP16.58■□□□□ 0.24
PTCH1-221ENST00000550914 PIAS4Q8N2W9 510 aaPredicted RBP16.58■□□□□ 0.24
PTCH1-221ENST00000550914 C8orf58Q8NAV2 365 aa16.58■□□□□ 0.24
PTCH1-221ENST00000550914 DCPSQ96C86 337 aaKnown RBP16.58■□□□□ 0.24
PTCH1-221ENST00000550914 SEC31BQ9NQW1 1179 aa16.58■□□□□ 0.24
PTCH1-221ENST00000550914 KCNQ5Q9NR82 932 aa16.58■□□□□ 0.24
PTCH1-221ENST00000550914 EGFRP00533 1210 aa16.57■□□□□ 0.24
PTCH1-221ENST00000550914 HUNKP57058 714 aa16.57■□□□□ 0.24
PTCH1-221ENST00000550914 AGBL3Q8NEM8 1001 aa16.57■□□□□ 0.24
PTCH1-221ENST00000550914 XDHP47989 1333 aa16.56■□□□□ 0.24
PTCH1-221ENST00000550914 G3V3G9 751 aa16.56■□□□□ 0.24
PTCH1-221ENST00000550914 DCAF8Q5TAQ9 597 aa16.56■□□□□ 0.24
PTCH1-221ENST00000550914 ANKRD18AQ8IVF6 992 aa16.56■□□□□ 0.24
PTCH1-221ENST00000550914 C2orf69Q8N8R5 385 aa16.56■□□□□ 0.24
PTCH1-221ENST00000550914 GBA2Q9HCG7 927 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-221ENST00000550914 AKAP11Q9UKA4 1901 aa16.55■□□□□ 0.24
PTCH1-221ENST00000550914 ZNF280AP59817 542 aaPredicted RBP16.55■□□□□ 0.24
PTCH1-221ENST00000550914 KIF4BQ2VIQ3 1234 aa16.55■□□□□ 0.24
PTCH1-221ENST00000550914 KSR2Q6VAB6 950 aa16.55■□□□□ 0.24
PTCH1-221ENST00000550914 ATP2B4P23634 1241 aa16.54■□□□□ 0.24
PTCH1-221ENST00000550914 CCDC27Q2M243 656 aa16.54■□□□□ 0.24
PTCH1-221ENST00000550914 RBM26Q5T8P6 1007 aaKnown RBP16.54■□□□□ 0.24
PTCH1-221ENST00000550914 RGMBQ6NW40 437 aa16.54■□□□□ 0.24
PTCH1-221ENST00000550914 RSBN1LQ6PCB5 846 aaPredicted RBP16.54■□□□□ 0.24
PTCH1-221ENST00000550914 PODNQ7Z5L7 613 aa16.54■□□□□ 0.24
PTCH1-221ENST00000550914 SULF1Q8IWU6 871 aa16.54■□□□□ 0.24
PTCH1-221ENST00000550914 CCDC102AQ96A19 550 aa16.54■□□□□ 0.24
PTCH1-221ENST00000550914 CDC5LQ99459 802 aaKnown RBP16.54■□□□□ 0.24
PTCH1-221ENST00000550914 MAP3K2Q9Y2U5 619 aa16.54■□□□□ 0.24
PTCH1-221ENST00000550914 SPEF2Q9C093 1822 aa16.54■□□□□ 0.24
PTCH1-221ENST00000550914 IGKV5-2P06315 115 aa16.53■□□□□ 0.24
PTCH1-221ENST00000550914 CTSWP56202 376 aa16.53■□□□□ 0.24
PTCH1-221ENST00000550914 NEXNQ0ZGT2 675 aa16.53■□□□□ 0.24
PTCH1-221ENST00000550914 STK31Q9BXU1 1019 aa16.53■□□□□ 0.24
PTCH1-221ENST00000550914 GGA3Q9NZ52 723 aa16.53■□□□□ 0.24
PTCH1-221ENST00000550914 TSKSQ9UJT2 592 aa16.53■□□□□ 0.24
PTCH1-221ENST00000550914 PI4KAP2A4QPH2 592 aa16.52■□□□□ 0.24
PTCH1-221ENST00000550914 FAM155AB1AL88 458 aaPredicted RBP16.52■□□□□ 0.24
PTCH1-221ENST00000550914 ADM5C9JUS6 153 aa16.52■□□□□ 0.24
PTCH1-221ENST00000550914 DLK2Q6UY11 383 aa16.52■□□□□ 0.24
PTCH1-221ENST00000550914 TSPYL6Q8N831 410 aa16.52■□□□□ 0.24
PTCH1-221ENST00000550914 PI4KAP1Q8N8J0 262 aa16.52■□□□□ 0.24
PTCH1-221ENST00000550914 TTLL11Q8NHH1 800 aa16.52■□□□□ 0.24
PTCH1-221ENST00000550914 GMLQ99445 158 aa16.52■□□□□ 0.24
PTCH1-221ENST00000550914 BSDC1Q9NW68 430 aaPredicted RBP16.52■□□□□ 0.24
PTCH1-221ENST00000550914 SAGE1Q9NXZ1 904 aa16.52■□□□□ 0.24
PTCH1-221ENST00000550914 PITPNM2Q9BZ72 1349 aa16.51■□□□□ 0.23
PTCH1-221ENST00000550914 USP17L3A6NCW0 530 aa16.51■□□□□ 0.23
PTCH1-221ENST00000550914 USP17L4A6NCW7 530 aa16.51■□□□□ 0.23
PTCH1-221ENST00000550914 NCBP3Q53F19 620 aaKnown RBP16.51■□□□□ 0.23
PTCH1-221ENST00000550914 USP17L1Q7RTZ2 530 aa16.51■□□□□ 0.23
PTCH1-221ENST00000550914 JARID2Q92833 1246 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-221ENST00000550914 CCDC85AQ96PX6 553 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-221ENST00000550914 ZIC5Q96T25 663 aa16.51■□□□□ 0.23
PTCH1-221ENST00000550914 MED23Q9ULK4 1368 aa16.51■□□□□ 0.23
PTCH1-221ENST00000550914 IL16Q14005 1332 aa16.5■□□□□ 0.23
PTCH1-221ENST00000550914 ZNF646O15015 1829 aaPredicted RBP16.5■□□□□ 0.23
PTCH1-221ENST00000550914 USP17L8P0C7I0 530 aa16.5■□□□□ 0.23
PTCH1-221ENST00000550914 FKBP1BP68106 108 aa16.5■□□□□ 0.23
PTCH1-221ENST00000550914 MINPP1Q9UNW1 487 aa16.5■□□□□ 0.23
PTCH1-221ENST00000550914 PAPPA2Q9BXP8 1791 aa16.49■□□□□ 0.23
PTCH1-221ENST00000550914 NEURL1BA8MQ27 555 aa16.49■□□□□ 0.23
PTCH1-221ENST00000550914 RGS19P49795 217 aa16.49■□□□□ 0.23
PTCH1-221ENST00000550914 MMP14P50281 582 aa16.49■□□□□ 0.23
PTCH1-221ENST00000550914 ZNF157P51786 506 aaPredicted RBP16.49■□□□□ 0.23
PTCH1-221ENST00000550914 SCARF1Q14162 830 aa16.49■□□□□ 0.23
PTCH1-221ENST00000550914 TSR2Q969E8 191 aaKnown RBP16.49■□□□□ 0.23
PTCH1-221ENST00000550914 CDCA5Q96FF9 252 aa16.49■□□□□ 0.23
PTCH1-221ENST00000550914 MCOLN1Q9GZU1 580 aa16.49■□□□□ 0.23
PTCH1-221ENST00000550914 MYOZ2Q9NPC6 264 aa16.49■□□□□ 0.23
PTCH1-221ENST00000550914 ASTN2O75129 1339 aaPredicted RBP16.48■□□□□ 0.23
PTCH1-221ENST00000550914 CCDC85CA6NKD9 419 aa16.48■□□□□ 0.23
PTCH1-221ENST00000550914 H7C1W4 665 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms