RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PDE4AP27815 886 aa14.02□□□□□ -0.17
VPS29-208ENST00000550267 RGS19P49795 217 aa14.02□□□□□ -0.17
VPS29-208ENST00000550267 DCTN1Q14203 1278 aa14.02□□□□□ -0.17
VPS29-208ENST00000550267 CC2D2BQ6DHV5 1058 aa14.02□□□□□ -0.17
VPS29-208ENST00000550267 LARGE2Q8N3Y3 721 aa14.02□□□□□ -0.17
VPS29-208ENST00000550267 RTF1Q92541 710 aaKnown RBP14.02□□□□□ -0.17
VPS29-208ENST00000550267 TLL2Q9Y6L7 1015 aa14.02□□□□□ -0.17
VPS29-208ENST00000550267 TCERG1O14776 1098 aaKnown RBP14.01□□□□□ -0.17
VPS29-208ENST00000550267 USP50Q70EL3 339 aaPredicted RBP14.01□□□□□ -0.17
VPS29-208ENST00000550267 NGEFQ8N5V2 710 aa14.01□□□□□ -0.17
VPS29-208ENST00000550267 NYXQ9GZU5 481 aa14.01□□□□□ -0.17
VPS29-208ENST00000550267 VPS9D1Q9Y2B5 631 aa14.01□□□□□ -0.17
VPS29-208ENST00000550267 NPC1L1Q9UHC9 1359 aa14□□□□□ -0.17
VPS29-208ENST00000550267 ZNF454Q8N9F8 522 aa14□□□□□ -0.17
VPS29-208ENST00000550267 RPGRQ92834 1020 aaKnown RBP14□□□□□ -0.17
VPS29-208ENST00000550267 KCTD12Q96CX2 325 aaKnown RBP14□□□□□ -0.17
VPS29-208ENST00000550267 HOXA10P31260 410 aaPredicted RBP13.99□□□□□ -0.17
VPS29-208ENST00000550267 NIM1KQ8IY84 436 aa13.99□□□□□ -0.17
VPS29-208ENST00000550267 CFAP44Q96MT7 982 aa13.99□□□□□ -0.17
VPS29-208ENST00000550267 SLC4A5Q9BY07 1137 aa13.99□□□□□ -0.17
VPS29-208ENST00000550267 RIC1Q4ADV7 1423 aa13.98□□□□□ -0.17
VPS29-208ENST00000550267 PPEF1O14829 653 aaPredicted RBP13.98□□□□□ -0.17
VPS29-208ENST00000550267 GPTP24298 496 aa13.98□□□□□ -0.17
VPS29-208ENST00000550267 MAP2K2P36507 400 aa13.98□□□□□ -0.17
VPS29-208ENST00000550267 RBM17Q96I25 401 aaKnown RBP13.98□□□□□ -0.17
VPS29-208ENST00000550267 CFAP53Q96M91 514 aa13.98□□□□□ -0.17
VPS29-208ENST00000550267 MCOLN1Q9GZU1 580 aa13.98□□□□□ -0.17
VPS29-208ENST00000550267 ADARB2Q9NS39 739 aaKnown RBP13.98□□□□□ -0.17
VPS29-208ENST00000550267 MIS18AQ9NYP9 233 aa13.98□□□□□ -0.17
VPS29-208ENST00000550267 MAP3K15Q6ZN16 1313 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 UBN2Q6ZU65 1347 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 LAMB4A4D0S4 1761 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 ERVV-1B6SEH8 477 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 PPIP5K2O43314 1243 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 U2AF1L5P0DN76 240 aaPredicted RBP13.97□□□□□ -0.17
VPS29-208ENST00000550267 U2AF1Q01081 240 aaKnown RBP eCLIP13.97□□□□□ -0.17
VPS29-208ENST00000550267 AOC3Q16853 763 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 GRIPAP1Q4V328 841 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 SUSD4Q5VX71 490 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 TTLL7Q6ZT98 887 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 SAPCD2Q86UD0 394 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 CRAMP1Q96RY5 1269 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 GLIS2Q9BZE0 524 aaPredicted RBP13.97□□□□□ -0.17
VPS29-208ENST00000550267 GPRC5DQ9NZD1 345 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 TRPM7Q96QT4 1865 aa13.97□□□□□ -0.17
VPS29-208ENST00000550267 CELF2O95319 508 aaKnown RBP13.96□□□□□ -0.17
VPS29-208ENST00000550267 FOSBP53539 338 aa13.96□□□□□ -0.17
VPS29-208ENST00000550267 TAF7Q15545 349 aaPredicted RBP13.96□□□□□ -0.17
VPS29-208ENST00000550267 KIF6Q6ZMV9 814 aa13.96□□□□□ -0.17
VPS29-208ENST00000550267 ZBTB3Q9H5J0 574 aa13.96□□□□□ -0.17
VPS29-208ENST00000550267 NUDCQ9Y266 331 aa13.96□□□□□ -0.17
VPS29-208ENST00000550267 RRP7AQ9Y3A4 280 aaKnown RBP13.96□□□□□ -0.17
VPS29-208ENST00000550267 IBTKQ9P2D0 1353 aaPredicted RBP13.96□□□□□ -0.18
VPS29-208ENST00000550267 HTATSF1O43719 755 aaKnown RBP13.95□□□□□ -0.18
VPS29-208ENST00000550267 NTSR2O95665 410 aa13.95□□□□□ -0.18
VPS29-208ENST00000550267 MYL6BP14649 208 aa13.95□□□□□ -0.18
VPS29-208ENST00000550267 CXCL9Q07325 125 aa13.95□□□□□ -0.18
VPS29-208ENST00000550267 CA12O43570 354 aa13.94□□□□□ -0.18
VPS29-208ENST00000550267 GMPSP49915 693 aaPredicted RBP13.94□□□□□ -0.18
VPS29-208ENST00000550267 BRPF1P55201 1214 aaPredicted RBP13.94□□□□□ -0.18
VPS29-208ENST00000550267 DGKZQ13574 1117 aa13.94□□□□□ -0.18
VPS29-208ENST00000550267 ZNF408Q9H9D4 720 aa13.94□□□□□ -0.18
VPS29-208ENST00000550267 NUP98P52948 1817 aa13.93□□□□□ -0.18
VPS29-208ENST00000550267 GTPBP6O43824 516 aaPredicted RBP13.93□□□□□ -0.18
VPS29-208ENST00000550267 CIAPIN1Q6FI81 312 aa13.93□□□□□ -0.18
VPS29-208ENST00000550267 ZNF34Q8IZ26 560 aa13.93□□□□□ -0.18
VPS29-208ENST00000550267 HHIPL1Q96JK4 782 aa13.93□□□□□ -0.18
VPS29-208ENST00000550267 ZNRF3Q9ULT6 936 aa13.93□□□□□ -0.18
VPS29-208ENST00000550267 ATP6V0A2Q9Y487 856 aa13.93□□□□□ -0.18
VPS29-208ENST00000550267 PTPREP23469 700 aa13.92□□□□□ -0.18
VPS29-208ENST00000550267 HIRAP54198 1017 aaPredicted RBP13.92□□□□□ -0.18
VPS29-208ENST00000550267 CCER1Q8TC90 406 aaPredicted RBP13.92□□□□□ -0.18
VPS29-208ENST00000550267 TMX4Q9H1E5 349 aaPredicted RBP13.92□□□□□ -0.18
VPS29-208ENST00000550267 VPS33BQ9H267 617 aa13.92□□□□□ -0.18
VPS29-208ENST00000550267 PGAP2Q9UHJ9 254 aa13.92□□□□□ -0.18
VPS29-208ENST00000550267 EIF4A1P60842 406 aaKnown RBP13.91□□□□□ -0.18
VPS29-208ENST00000550267 GIGYF2Q6Y7W6 1299 aaKnown RBP13.91□□□□□ -0.18
VPS29-208ENST00000550267 PPP1R42Q7Z4L9 355 aa13.91□□□□□ -0.18
VPS29-208ENST00000550267 SUPT20HQ8NEM7 779 aa13.91□□□□□ -0.18
VPS29-208ENST00000550267 TRPM4Q8TD43 1214 aa13.91□□□□□ -0.18
VPS29-208ENST00000550267 NLRP3Q96P20 1036 aa13.91□□□□□ -0.18
VPS29-208ENST00000550267 ZIC5Q96T25 663 aa13.91□□□□□ -0.18
VPS29-208ENST00000550267 RTFDC1Q9BY42 306 aaPredicted RBP13.91□□□□□ -0.18
VPS29-208ENST00000550267 KDM3BQ7LBC6 1761 aa13.91□□□□□ -0.18
VPS29-208ENST00000550267 ABCC4O15439 1325 aa13.9□□□□□ -0.18
VPS29-208ENST00000550267 SHTN1A0MZ66 631 aa13.9□□□□□ -0.18
VPS29-208ENST00000550267 BHMG1C9JSJ3 638 aaPredicted RBP13.9□□□□□ -0.18
VPS29-208ENST00000550267 RAD17O75943 681 aa13.9□□□□□ -0.18
VPS29-208ENST00000550267 PPP2R1AP30153 589 aa13.9□□□□□ -0.18
VPS29-208ENST00000550267 DPP8Q6V1X1 898 aaPredicted RBP13.9□□□□□ -0.18
VPS29-208ENST00000550267 PNISRQ8TF01 805 aaKnown RBP13.9□□□□□ -0.18
VPS29-208ENST00000550267 BCL2L13Q9BXK5 485 aa13.9□□□□□ -0.18
VPS29-208ENST00000550267 CDHR2Q9BYE9 1310 aa13.9□□□□□ -0.19
VPS29-208ENST00000550267 EVI5O60447 810 aa13.89□□□□□ -0.19
VPS29-208ENST00000550267 PARP10Q53GL7 1025 aa13.89□□□□□ -0.19
VPS29-208ENST00000550267 DLK2Q6UY11 383 aa13.89□□□□□ -0.19
VPS29-208ENST00000550267 CDC37L1Q7L3B6 337 aa13.89□□□□□ -0.19
VPS29-208ENST00000550267 ZC3H15Q8WU90 426 aaKnown RBP13.89□□□□□ -0.19
VPS29-208ENST00000550267 HUNKP57058 714 aa13.88□□□□□ -0.19
VPS29-208ENST00000550267 KIAA2012Q0VF49 1180 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms