RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 CASP7P55210 303 aa23.76■■□□□ 1.39
CHMP1A-207ENST00000549328 BCL2L13Q9BXK5 485 aa23.76■■□□□ 1.39
CHMP1A-207ENST00000549328 GREM2Q9H772 168 aa23.76■■□□□ 1.39
CHMP1A-207ENST00000549328 DBNDD1Q9H9R9 158 aa23.76■■□□□ 1.39
CHMP1A-207ENST00000549328 MYH3P11055 1940 aa23.75■■□□□ 1.39
CHMP1A-207ENST00000549328 TMEM88BA6NKF7 163 aa23.75■■□□□ 1.39
CHMP1A-207ENST00000549328 UFL1O94874 794 aa23.75■■□□□ 1.39
CHMP1A-207ENST00000549328 BSDC1Q9NW68 430 aaPredicted RBP23.75■■□□□ 1.39
CHMP1A-207ENST00000549328 XDHP47989 1333 aa23.75■■□□□ 1.39
CHMP1A-207ENST00000549328 ECE2O60344 883 aa23.74■■□□□ 1.39
CHMP1A-207ENST00000549328 DPF2Q92785 391 aa23.74■■□□□ 1.39
CHMP1A-207ENST00000549328 CSF1RP07333 972 aa23.73■■□□□ 1.39
CHMP1A-207ENST00000549328 BEND3Q5T5X7 828 aa23.73■■□□□ 1.39
CHMP1A-207ENST00000549328 CNOT7Q9UIV1 285 aaKnown RBP23.73■■□□□ 1.39
CHMP1A-207ENST00000549328 E9PSI1 815 aa23.72■■□□□ 1.39
CHMP1A-207ENST00000549328 F6X3S4 739 aa23.72■■□□□ 1.39
CHMP1A-207ENST00000549328 PSMD14O00487 310 aa23.72■■□□□ 1.39
CHMP1A-207ENST00000549328 ATP2B4P23634 1241 aa23.72■■□□□ 1.39
CHMP1A-207ENST00000549328 DOK7Q18PE1 504 aa23.72■■□□□ 1.39
CHMP1A-207ENST00000549328 MINPP1Q9UNW1 487 aa23.72■■□□□ 1.39
CHMP1A-207ENST00000549328 H7C1D1 291 aa23.71■■□□□ 1.39
CHMP1A-207ENST00000549328 CCER2I3L3R5 266 aa23.71■■□□□ 1.39
CHMP1A-207ENST00000549328 RPS12P25398 132 aaKnown RBP23.71■■□□□ 1.39
CHMP1A-207ENST00000549328 ZC3H15Q8WU90 426 aaKnown RBP23.71■■□□□ 1.39
CHMP1A-207ENST00000549328 GPR101Q96P66 508 aaPredicted RBP23.71■■□□□ 1.39
CHMP1A-207ENST00000549328 PGAP2Q9UHJ9 254 aa23.71■■□□□ 1.39
CHMP1A-207ENST00000549328 G3V3G9 751 aa23.7■■□□□ 1.38
CHMP1A-207ENST00000549328 DCAF8Q5TAQ9 597 aa23.7■■□□□ 1.38
CHMP1A-207ENST00000549328 ITGA6P23229 1130 aa23.69■■□□□ 1.38
CHMP1A-207ENST00000549328 IGHMBP2P38935 993 aaKnown RBP23.69■■□□□ 1.38
CHMP1A-207ENST00000549328 KCNQ5Q9NR82 932 aa23.69■■□□□ 1.38
CHMP1A-207ENST00000549328 MKRN1Q9UHC7 482 aaKnown RBP23.69■■□□□ 1.38
CHMP1A-207ENST00000549328 ZBTB12Q9Y330 459 aaPredicted RBP23.69■■□□□ 1.38
CHMP1A-207ENST00000549328 CNTNAP1P78357 1384 aa23.68■■□□□ 1.38
CHMP1A-207ENST00000549328 VIL1P09327 827 aaKnown RBP23.68■■□□□ 1.38
CHMP1A-207ENST00000549328 SLFN5Q08AF3 891 aa23.68■■□□□ 1.38
CHMP1A-207ENST00000549328 MICALL2Q8IY33 904 aa23.68■■□□□ 1.38
CHMP1A-207ENST00000549328 PCNTO95613 3336 aa23.68■■□□□ 1.38
CHMP1A-207ENST00000549328 ALDH1L1O75891 902 aa23.67■■□□□ 1.38
CHMP1A-207ENST00000549328 HIRAP54198 1017 aaPredicted RBP23.67■■□□□ 1.38
CHMP1A-207ENST00000549328 FAM161AQ3B820 660 aa23.67■■□□□ 1.38
CHMP1A-207ENST00000549328 CCT4P50991 539 aaKnown RBP23.66■■□□□ 1.38
CHMP1A-207ENST00000549328 PODNQ7Z5L7 613 aa23.66■■□□□ 1.38
CHMP1A-207ENST00000549328 MPHOSPH8Q99549 860 aa23.66■■□□□ 1.38
CHMP1A-207ENST00000549328 GRM8O00222 908 aa23.65■■□□□ 1.38
CHMP1A-207ENST00000549328 FOXO4P98177 505 aa23.65■■□□□ 1.38
CHMP1A-207ENST00000549328 TRPM4Q8TD43 1214 aa23.65■■□□□ 1.38
CHMP1A-207ENST00000549328 SRCIN1Q9C0H9 1055 aa23.65■■□□□ 1.38
CHMP1A-207ENST00000549328 ANKRD2Q9GZV1 360 aa23.65■■□□□ 1.38
CHMP1A-207ENST00000549328 LEMD3Q9Y2U8 911 aa23.65■■□□□ 1.38
CHMP1A-207ENST00000549328 MED23Q9ULK4 1368 aa23.65■■□□□ 1.38
CHMP1A-207ENST00000549328 SHTN1A0MZ66 631 aa23.64■■□□□ 1.37
CHMP1A-207ENST00000549328 ANKRD18BA2A2Z9 1011 aa23.64■■□□□ 1.37
CHMP1A-207ENST00000549328 RASSF10A6NK89 507 aa23.64■■□□□ 1.37
CHMP1A-207ENST00000549328 MRPL50Q8N5N7 158 aaKnown RBP23.64■■□□□ 1.37
CHMP1A-207ENST00000549328 C9orf78Q9NZ63 289 aaPredicted RBP23.64■■□□□ 1.37
CHMP1A-207ENST00000549328 SCN9AQ15858 1988 aa23.63■■□□□ 1.37
CHMP1A-207ENST00000549328 ZNF609O15014 1411 aa23.63■■□□□ 1.37
CHMP1A-207ENST00000549328 DEFB115Q30KQ5 88 aa23.63■■□□□ 1.37
CHMP1A-207ENST00000549328 SLC4A10Q6U841 1118 aa23.63■■□□□ 1.37
CHMP1A-207ENST00000549328 AGBL3Q8NEM8 1001 aa23.63■■□□□ 1.37
CHMP1A-207ENST00000549328 WTIPA6NIX2 430 aaPredicted RBP23.62■■□□□ 1.37
CHMP1A-207ENST00000549328 TRAF5O00463 557 aa23.62■■□□□ 1.37
CHMP1A-207ENST00000549328 FMR1Q06787 632 aaKnown RBP eCLIP23.62■■□□□ 1.37
CHMP1A-207ENST00000549328 IFIT5Q13325 482 aaKnown RBP23.62■■□□□ 1.37
CHMP1A-207ENST00000549328 CST9Q5W186 159 aa23.62■■□□□ 1.37
CHMP1A-207ENST00000549328 CDC37L1Q7L3B6 337 aa23.62■■□□□ 1.37
CHMP1A-207ENST00000549328 SAMD7Q7Z3H4 446 aa23.62■■□□□ 1.37
CHMP1A-207ENST00000549328 PTPRCP08575 1304 aa23.61■■□□□ 1.37
CHMP1A-207ENST00000549328 VEGFBP49765 207 aa23.61■■□□□ 1.37
CHMP1A-207ENST00000549328 RSBN1LQ6PCB5 846 aaPredicted RBP23.61■■□□□ 1.37
CHMP1A-207ENST00000549328 LMBR1LQ6UX01 489 aa23.61■■□□□ 1.37
CHMP1A-207ENST00000549328 TRMT2AQ8IZ69 625 aaKnown RBP23.61■■□□□ 1.37
CHMP1A-207ENST00000549328 ABT1Q9ULW3 272 aaKnown RBP23.61■■□□□ 1.37
CHMP1A-207ENST00000549328 SPEF2Q9C093 1822 aa23.61■■□□□ 1.37
CHMP1A-207ENST00000549328 USP17L3A6NCW0 530 aa23.6■■□□□ 1.37
CHMP1A-207ENST00000549328 USP17L4A6NCW7 530 aa23.6■■□□□ 1.37
CHMP1A-207ENST00000549328 HSPA1AP0DMV8 641 aaKnown RBP23.6■■□□□ 1.37
CHMP1A-207ENST00000549328 HSPA1BP0DMV9 641 aaKnown RBP23.6■■□□□ 1.37
CHMP1A-207ENST00000549328 USP17L1Q7RTZ2 530 aa23.6■■□□□ 1.37
CHMP1A-207ENST00000549328 SSH1Q8WYL5 1049 aa23.6■■□□□ 1.37
CHMP1A-207ENST00000549328 CDCA7LQ96GN5 454 aa23.6■■□□□ 1.37
CHMP1A-207ENST00000549328 GLIS2Q9BZE0 524 aaPredicted RBP23.6■■□□□ 1.37
CHMP1A-207ENST00000549328 COA1Q9GZY4 146 aa23.6■■□□□ 1.37
CHMP1A-207ENST00000549328 TRPM7Q96QT4 1865 aa23.6■■□□□ 1.37
CHMP1A-207ENST00000549328 ZNF804BA4D1E1 1349 aa23.59■■□□□ 1.37
CHMP1A-207ENST00000549328 CHRNDQ07001 517 aa23.59■■□□□ 1.37
CHMP1A-207ENST00000549328 ALDH1L2Q3SY69 923 aa23.59■■□□□ 1.37
CHMP1A-207ENST00000549328 TBC1D10BQ4KMP7 808 aaPredicted RBP23.59■■□□□ 1.37
CHMP1A-207ENST00000549328 GMLQ99445 158 aa23.59■■□□□ 1.37
CHMP1A-207ENST00000549328 EGFRP00533 1210 aa23.58■■□□□ 1.37
CHMP1A-207ENST00000549328 ZNF280AP59817 542 aaPredicted RBP23.58■■□□□ 1.37
CHMP1A-207ENST00000549328 CCDC57Q2TAC2 916 aa23.58■■□□□ 1.37
CHMP1A-207ENST00000549328 EPHA10Q5JZY3 1008 aa23.58■■□□□ 1.37
CHMP1A-207ENST00000549328 CHMP3Q9Y3E7 222 aa23.58■■□□□ 1.37
CHMP1A-207ENST00000549328 PSME4Q14997 1843 aa23.58■■□□□ 1.37
CHMP1A-207ENST00000549328 UTYO14607 1347 aa23.58■■□□□ 1.36
CHMP1A-207ENST00000549328 CT47B1P0C2W7 299 aaPredicted RBP23.57■■□□□ 1.36
CHMP1A-207ENST00000549328 RBM26Q5T8P6 1007 aaKnown RBP23.57■■□□□ 1.36
CHMP1A-207ENST00000549328 TXNRD3Q86VQ6 643 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms