RNA–Protein interactions for RNA: ENST00000548399.1

PRPF40B-207, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-207ENST00000548399 DICER1Q9UPY3 1922 aaKnown RBP17.37■□□□□ 0.37
PRPF40B-207ENST00000548399 COL4A5P29400 1685 aa17.37■□□□□ 0.37
PRPF40B-207ENST00000548399 KIF3CO14782 793 aa17.37■□□□□ 0.37
PRPF40B-207ENST00000548399 EIF6P56537 245 aaKnown RBP17.37■□□□□ 0.37
PRPF40B-207ENST00000548399 TAF7LQ5H9L4 462 aa17.37■□□□□ 0.37
PRPF40B-207ENST00000548399 INTS3Q68E01 1043 aaKnown RBP17.37■□□□□ 0.37
PRPF40B-207ENST00000548399 BICC1Q9H694 974 aaKnown RBP17.37■□□□□ 0.37
PRPF40B-207ENST00000548399 RRAGCQ9HB90 399 aa17.37■□□□□ 0.37
PRPF40B-207ENST00000548399 MINPP1Q9UNW1 487 aa17.37■□□□□ 0.37
PRPF40B-207ENST00000548399 CCDC88AQ3V6T2 1871 aa17.37■□□□□ 0.37
PRPF40B-207ENST00000548399 DDNO94850 711 aaPredicted RBP17.36■□□□□ 0.37
PRPF40B-207ENST00000548399 UBTFL1P0CB47 393 aaPredicted RBP17.36■□□□□ 0.37
PRPF40B-207ENST00000548399 ZNRF3Q9ULT6 936 aa17.36■□□□□ 0.37
PRPF40B-207ENST00000548399 HDAC5Q9UQL6 1122 aa17.36■□□□□ 0.37
PRPF40B-207ENST00000548399 RIMBP2O15034 1052 aa17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 VEGFAP15692 232 aaPredicted RBP17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 ATP2B4P23634 1241 aa17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 RABL6Q3YEC7 729 aaPredicted RBP17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 C16orf71Q8IYS4 520 aaPredicted RBP17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 GPC2Q8N158 579 aa17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 ANKRD44Q8N8A2 993 aa17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 CLUAP1Q96AJ1 413 aa17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 ZC3H12CQ9C0D7 883 aaKnown RBP17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 ANKRD2Q9GZV1 360 aa17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 LTBP1Q14766 1721 aa17.35■□□□□ 0.37
PRPF40B-207ENST00000548399 GPR101Q96P66 508 aaPredicted RBP17.34■□□□□ 0.37
PRPF40B-207ENST00000548399 LDHAL6AQ6ZMR3 332 aa17.33■□□□□ 0.36
PRPF40B-207ENST00000548399 FTSJ3Q8IY81 847 aaKnown RBP17.33■□□□□ 0.36
PRPF40B-207ENST00000548399 ZNF594Q96JF6 807 aaPredicted RBP17.33■□□□□ 0.36
PRPF40B-207ENST00000548399 L3MBTL3Q96JM7 780 aaPredicted RBP17.33■□□□□ 0.36
PRPF40B-207ENST00000548399 TNNQ9UQP3 1299 aa17.33■□□□□ 0.36
PRPF40B-207ENST00000548399 GJA3Q9Y6H8 435 aa17.33■□□□□ 0.36
PRPF40B-207ENST00000548399 IQCA1LA6NCM1 817 aa17.32■□□□□ 0.36
PRPF40B-207ENST00000548399 G3V3G9 751 aa17.32■□□□□ 0.36
PRPF40B-207ENST00000548399 GNAI3P08754 354 aa17.32■□□□□ 0.36
PRPF40B-207ENST00000548399 C1QTNF8P60827 252 aa17.32■□□□□ 0.36
PRPF40B-207ENST00000548399 CHRNDQ07001 517 aa17.32■□□□□ 0.36
PRPF40B-207ENST00000548399 DCAF8Q5TAQ9 597 aa17.32■□□□□ 0.36
PRPF40B-207ENST00000548399 MEIS3Q99687 375 aa17.32■□□□□ 0.36
PRPF40B-207ENST00000548399 CNNM1Q9NRU3 951 aa17.32■□□□□ 0.36
PRPF40B-207ENST00000548399 LEMD3Q9Y2U8 911 aa17.32■□□□□ 0.36
PRPF40B-207ENST00000548399 WDR90Q96KV7 1748 aa17.32■□□□□ 0.36
PRPF40B-207ENST00000548399 POTECB2RU33 542 aa17.31■□□□□ 0.36
PRPF40B-207ENST00000548399 TOMM70O94826 608 aa17.31■□□□□ 0.36
PRPF40B-207ENST00000548399 KCNJ4P48050 445 aa17.31■□□□□ 0.36
PRPF40B-207ENST00000548399 CXCL9Q07325 125 aa17.31■□□□□ 0.36
PRPF40B-207ENST00000548399 DBNDD1Q9H9R9 158 aa17.31■□□□□ 0.36
PRPF40B-207ENST00000548399 RCAN3Q9UKA8 241 aa17.31■□□□□ 0.36
PRPF40B-207ENST00000548399 MED23Q9ULK4 1368 aa17.3■□□□□ 0.36
PRPF40B-207ENST00000548399 ZNF804BA4D1E1 1349 aa17.3■□□□□ 0.36
PRPF40B-207ENST00000548399 ECE2O60344 883 aa17.3■□□□□ 0.36
PRPF40B-207ENST00000548399 TNIP1Q15025 636 aa17.3■□□□□ 0.36
PRPF40B-207ENST00000548399 DOK7Q18PE1 504 aa17.3■□□□□ 0.36
PRPF40B-207ENST00000548399 CIAPIN1Q6FI81 312 aa17.3■□□□□ 0.36
PRPF40B-207ENST00000548399 DZIP1LQ8IYY4 767 aaKnown RBP17.3■□□□□ 0.36
PRPF40B-207ENST00000548399 TMEM57Q8N5G2 664 aa17.3■□□□□ 0.36
PRPF40B-207ENST00000548399 LRRFIP2Q9Y608 721 aaKnown RBP17.3■□□□□ 0.36
PRPF40B-207ENST00000548399 SPEF2Q9C093 1822 aa17.3■□□□□ 0.36
PRPF40B-207ENST00000548399 WTIPA6NIX2 430 aaPredicted RBP17.29■□□□□ 0.36
PRPF40B-207ENST00000548399 YDJCA8MPS7 323 aa17.29■□□□□ 0.36
PRPF40B-207ENST00000548399 RAD17O75943 681 aa17.29■□□□□ 0.36
PRPF40B-207ENST00000548399 HACL1Q9UJ83 578 aa17.29■□□□□ 0.36
PRPF40B-207ENST00000548399 TAF5LO75529 589 aa17.28■□□□□ 0.36
PRPF40B-207ENST00000548399 LMOD1P29536 600 aaPredicted RBP17.28■□□□□ 0.36
PRPF40B-207ENST00000548399 HELBQ8NG08 1087 aaPredicted RBP17.28■□□□□ 0.36
PRPF40B-207ENST00000548399 RBM46Q8TBY0 533 aaKnown RBP17.28■□□□□ 0.36
PRPF40B-207ENST00000548399 MS4A1P11836 297 aa17.27■□□□□ 0.36
PRPF40B-207ENST00000548399 ITPRIPQ8IWB1 547 aa17.27■□□□□ 0.36
PRPF40B-207ENST00000548399 PUS3Q9BZE2 481 aaKnown RBP17.27■□□□□ 0.36
PRPF40B-207ENST00000548399 TAF1DQ9H5J8 278 aaPredicted RBP17.27■□□□□ 0.36
PRPF40B-207ENST00000548399 MROH5Q6ZUA9 1318 aa17.26■□□□□ 0.35
PRPF40B-207ENST00000548399 PLIN1O60240 522 aa17.26■□□□□ 0.35
PRPF40B-207ENST00000548399 GNAI2P04899 355 aa17.26■□□□□ 0.35
PRPF40B-207ENST00000548399 RLBP1P12271 317 aa17.26■□□□□ 0.35
PRPF40B-207ENST00000548399 EPHX2P34913 555 aa17.26■□□□□ 0.35
PRPF40B-207ENST00000548399 SCNN1DP51172 638 aa17.26■□□□□ 0.35
PRPF40B-207ENST00000548399 KLHDC4Q8TBB5 520 aa17.26■□□□□ 0.35
PRPF40B-207ENST00000548399 RIPOR2Q9Y4F9 1068 aa17.26■□□□□ 0.35
PRPF40B-207ENST00000548399 KLRK1P26718 216 aa17.25■□□□□ 0.35
PRPF40B-207ENST00000548399 RFX5P48382 616 aaPredicted RBP17.25■□□□□ 0.35
PRPF40B-207ENST00000548399 GMPSP49915 693 aaPredicted RBP17.25■□□□□ 0.35
PRPF40B-207ENST00000548399 PODNQ7Z5L7 613 aa17.25■□□□□ 0.35
PRPF40B-207ENST00000548399 SMC1BQ8NDV3 1235 aa17.25■□□□□ 0.35
PRPF40B-207ENST00000548399 COA1Q9GZY4 146 aa17.25■□□□□ 0.35
PRPF40B-207ENST00000548399 PSMD14O00487 310 aa17.24■□□□□ 0.35
PRPF40B-207ENST00000548399 FSTL1Q12841 308 aa17.24■□□□□ 0.35
PRPF40B-207ENST00000548399 LRRC24Q50LG9 513 aa17.24■□□□□ 0.35
PRPF40B-207ENST00000548399 METTL24Q5JXM2 366 aa17.24■□□□□ 0.35
PRPF40B-207ENST00000548399 PNMA8AQ86V59 439 aaPredicted RBP17.24■□□□□ 0.35
PRPF40B-207ENST00000548399 TXNRD3Q86VQ6 643 aa17.24■□□□□ 0.35
PRPF40B-207ENST00000548399 PANK1Q8TE04 598 aa17.24■□□□□ 0.35
PRPF40B-207ENST00000548399 KCNQ5Q9NR82 932 aa17.24■□□□□ 0.35
PRPF40B-207ENST00000548399 GPRC5DQ9NZD1 345 aa17.24■□□□□ 0.35
PRPF40B-207ENST00000548399 SNAP23O00161 211 aa17.23■□□□□ 0.35
PRPF40B-207ENST00000548399 EYA2O00167 538 aa17.23■□□□□ 0.35
PRPF40B-207ENST00000548399 SRGAP3O43295 1099 aa17.23■□□□□ 0.35
PRPF40B-207ENST00000548399 EPS15P42566 896 aa17.23■□□□□ 0.35
PRPF40B-207ENST00000548399 PTPN12Q05209 780 aaKnown RBP17.23■□□□□ 0.35
PRPF40B-207ENST00000548399 MTX1Q13505 466 aa17.23■□□□□ 0.35
PRPF40B-207ENST00000548399 EAPPQ56P03 285 aaPredicted RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms