RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 AAMPQ13685 434 aa17.13■□□□□ 0.33
PTCH1-213ENST00000546820 PODXL2Q9NZ53 605 aa17.13■□□□□ 0.33
PTCH1-213ENST00000546820 XDHP47989 1333 aa17.13■□□□□ 0.33
PTCH1-213ENST00000546820 C6orf229H3BNL8 230 aa17.12■□□□□ 0.33
PTCH1-213ENST00000546820 NFKBIEO00221 500 aa17.12■□□□□ 0.33
PTCH1-213ENST00000546820 ATP2B4P23634 1241 aa17.12■□□□□ 0.33
PTCH1-213ENST00000546820 RFX5P48382 616 aaPredicted RBP17.12■□□□□ 0.33
PTCH1-213ENST00000546820 PTPN12Q05209 780 aaKnown RBP17.12■□□□□ 0.33
PTCH1-213ENST00000546820 CRBNQ96SW2 442 aa17.12■□□□□ 0.33
PTCH1-213ENST00000546820 EYA3Q99504 573 aa17.12■□□□□ 0.33
PTCH1-213ENST00000546820 RTFDC1Q9BY42 306 aaPredicted RBP17.12■□□□□ 0.33
PTCH1-213ENST00000546820 COPRSQ9NQ92 184 aa17.12■□□□□ 0.33
PTCH1-213ENST00000546820 GGA1Q9UJY5 639 aa17.12■□□□□ 0.33
PTCH1-213ENST00000546820 MROH5Q6ZUA9 1318 aa17.12■□□□□ 0.33
PTCH1-213ENST00000546820 HMMRO75330 724 aa17.11■□□□□ 0.33
PTCH1-213ENST00000546820 CHRNDQ07001 517 aa17.11■□□□□ 0.33
PTCH1-213ENST00000546820 LEMD3Q9Y2U8 911 aa17.11■□□□□ 0.33
PTCH1-213ENST00000546820 RIPOR2Q9Y4F9 1068 aa17.11■□□□□ 0.33
PTCH1-213ENST00000546820 PNMA6EA0A0J9YXQ4 647 aa17.1■□□□□ 0.33
PTCH1-213ENST00000546820 EYA2O00167 538 aa17.1■□□□□ 0.33
PTCH1-213ENST00000546820 CIAO1O76071 339 aa17.1■□□□□ 0.33
PTCH1-213ENST00000546820 KCNJ4P48050 445 aa17.1■□□□□ 0.33
PTCH1-213ENST00000546820 RASSF7Q02833 373 aa17.1■□□□□ 0.33
PTCH1-213ENST00000546820 G3BP1Q13283 466 aaKnown RBP eCLIP17.1■□□□□ 0.33
PTCH1-213ENST00000546820 WASHC4Q2M389 1173 aa17.1■□□□□ 0.33
PTCH1-213ENST00000546820 CEP85Q6P2H3 762 aa17.1■□□□□ 0.33
PTCH1-213ENST00000546820 KLHDC4Q8TBB5 520 aa17.1■□□□□ 0.33
PTCH1-213ENST00000546820 SSH3Q8TE77 659 aa17.1■□□□□ 0.33
PTCH1-213ENST00000546820 PUS3Q9BZE2 481 aaKnown RBP17.1■□□□□ 0.33
PTCH1-213ENST00000546820 ZC3H12CQ9C0D7 883 aaKnown RBP17.1■□□□□ 0.33
PTCH1-213ENST00000546820 ZNF277Q9NRM2 450 aaPredicted RBP17.1■□□□□ 0.33
PTCH1-213ENST00000546820 UFL1O94874 794 aa17.09■□□□□ 0.33
PTCH1-213ENST00000546820 IL15P40933 162 aaPredicted RBP17.09■□□□□ 0.33
PTCH1-213ENST00000546820 IARSP41252 1262 aaKnown RBP17.09■□□□□ 0.33
PTCH1-213ENST00000546820 POLA2Q14181 598 aa17.09■□□□□ 0.33
PTCH1-213ENST00000546820 METTL24Q5JXM2 366 aa17.09■□□□□ 0.33
PTCH1-213ENST00000546820 C9orf131Q5VYM1 1079 aa17.09■□□□□ 0.33
PTCH1-213ENST00000546820 TBC1D16Q8TBP0 767 aa17.09■□□□□ 0.33
PTCH1-213ENST00000546820 JDP2Q8WYK2 163 aa17.09■□□□□ 0.33
PTCH1-213ENST00000546820 SIL1Q9H173 461 aa17.09■□□□□ 0.33
PTCH1-213ENST00000546820 RNF181Q9P0P0 153 aa17.09■□□□□ 0.33
PTCH1-213ENST00000546820 FER1L6Q2WGJ9 1857 aa17.09■□□□□ 0.33
PTCH1-213ENST00000546820 G3V3G9 751 aa17.08■□□□□ 0.32
PTCH1-213ENST00000546820 LRRC24Q50LG9 513 aa17.08■□□□□ 0.32
PTCH1-213ENST00000546820 DCAF8Q5TAQ9 597 aa17.08■□□□□ 0.32
PTCH1-213ENST00000546820 LARGE2Q8N3Y3 721 aa17.08■□□□□ 0.32
PTCH1-213ENST00000546820 HELBQ8NG08 1087 aaPredicted RBP17.08■□□□□ 0.32
PTCH1-213ENST00000546820 CEP126Q9P2H0 1117 aa17.08■□□□□ 0.32
PTCH1-213ENST00000546820 POLLQ9UGP5 575 aa17.08■□□□□ 0.32
PTCH1-213ENST00000546820 ZNF804BA4D1E1 1349 aa17.07■□□□□ 0.32
PTCH1-213ENST00000546820 PPIP5K2O43314 1243 aa17.07■□□□□ 0.32
PTCH1-213ENST00000546820 TAF5LO75529 589 aa17.07■□□□□ 0.32
PTCH1-213ENST00000546820 SURF6O75683 361 aaKnown RBP17.07■□□□□ 0.32
PTCH1-213ENST00000546820 PA2G4Q9UQ80 394 aaKnown RBP17.07■□□□□ 0.32
PTCH1-213ENST00000546820 SNED1Q8TER0 1413 aa17.06■□□□□ 0.32
PTCH1-213ENST00000546820 PDE8BO95263 885 aa17.06■□□□□ 0.32
PTCH1-213ENST00000546820 KIAA2012Q0VF49 1180 aa17.06■□□□□ 0.32
PTCH1-213ENST00000546820 OS9Q13438 667 aaPredicted RBP17.06■□□□□ 0.32
PTCH1-213ENST00000546820 UBE4AQ14139 1066 aa17.06■□□□□ 0.32
PTCH1-213ENST00000546820 HSP90AB4PQ58FF6 505 aa17.06■□□□□ 0.32
PTCH1-213ENST00000546820 SLC51AQ86UW1 340 aa17.06■□□□□ 0.32
PTCH1-213ENST00000546820 COL4A1P02462 1669 aa17.06■□□□□ 0.32
PTCH1-213ENST00000546820 SPEF2Q9C093 1822 aa17.05■□□□□ 0.32
PTCH1-213ENST00000546820 LRRC37AA6NMS7 1700 aa17.05■□□□□ 0.32
PTCH1-213ENST00000546820 RIMBP2O15034 1052 aa17.05■□□□□ 0.32
PTCH1-213ENST00000546820 AOC3Q16853 763 aa17.05■□□□□ 0.32
PTCH1-213ENST00000546820 ATG9AQ7Z3C6 839 aa17.05■□□□□ 0.32
PTCH1-213ENST00000546820 NIM1KQ8IY84 436 aa17.05■□□□□ 0.32
PTCH1-213ENST00000546820 NOP58Q9Y2X3 529 aaKnown RBP17.05■□□□□ 0.32
PTCH1-213ENST00000546820 AKAP2Q9Y2D5 859 aa17.04■□□□□ 0.32
PTCH1-213ENST00000546820 CHD4Q14839 1912 aa17.04■□□□□ 0.32
PTCH1-213ENST00000546820 ZC3H4Q9UPT8 1303 aaKnown RBP17.03■□□□□ 0.32
PTCH1-213ENST00000546820 PRELPP51888 382 aa17.03■□□□□ 0.32
PTCH1-213ENST00000546820 DPY19L2Q6NUT2 758 aa17.03■□□□□ 0.32
PTCH1-213ENST00000546820 ERC1Q8IUD2 1116 aa17.03■□□□□ 0.32
PTCH1-213ENST00000546820 EXOC6Q8TAG9 804 aa17.03■□□□□ 0.32
PTCH1-213ENST00000546820 ZNRF3Q9ULT6 936 aa17.03■□□□□ 0.32
PTCH1-213ENST00000546820 SBF1O95248 1867 aa17.03■□□□□ 0.32
PTCH1-213ENST00000546820 IFIT1P09914 478 aaKnown RBP17.02■□□□□ 0.32
PTCH1-213ENST00000546820 EIF6P56537 245 aaKnown RBP17.02■□□□□ 0.32
PTCH1-213ENST00000546820 IRX6P78412 446 aaPredicted RBP17.02■□□□□ 0.32
PTCH1-213ENST00000546820 PUM3Q15397 648 aaKnown RBP17.02■□□□□ 0.32
PTCH1-213ENST00000546820 C15orf52Q6ZUT6 534 aaKnown RBP17.02■□□□□ 0.32
PTCH1-213ENST00000546820 SIRT2Q8IXJ6 389 aa17.02■□□□□ 0.32
PTCH1-213ENST00000546820 CCDC88AQ3V6T2 1871 aa17.01■□□□□ 0.31
PTCH1-213ENST00000546820 RAB11FIP3O75154 756 aa17.01■□□□□ 0.31
PTCH1-213ENST00000546820 SLC5A1P13866 664 aa17.01■□□□□ 0.31
PTCH1-213ENST00000546820 CAVIN4Q5BKX8 364 aa17.01■□□□□ 0.31
PTCH1-213ENST00000546820 VGLL2Q8N8G2 317 aa17.01■□□□□ 0.31
PTCH1-213ENST00000546820 LPIN2Q92539 896 aa17.01■□□□□ 0.31
PTCH1-213ENST00000546820 GPR101Q96P66 508 aaPredicted RBP17.01■□□□□ 0.31
PTCH1-213ENST00000546820 COA1Q9GZY4 146 aa17.01■□□□□ 0.31
PTCH1-213ENST00000546820 PCDHB15Q9Y5E8 787 aa17.01■□□□□ 0.31
PTCH1-213ENST00000546820 MED23Q9ULK4 1368 aa17.01■□□□□ 0.31
PTCH1-213ENST00000546820 WTIPA6NIX2 430 aaPredicted RBP17■□□□□ 0.31
PTCH1-213ENST00000546820 NEFLP07196 543 aa17■□□□□ 0.31
PTCH1-213ENST00000546820 TFCP2Q12800 502 aa17■□□□□ 0.31
PTCH1-213ENST00000546820 ATP2B3Q16720 1220 aa17■□□□□ 0.31
PTCH1-213ENST00000546820 DOK7Q18PE1 504 aa17■□□□□ 0.31
PTCH1-213ENST00000546820 ZNF804AQ7Z570 1209 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms