RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 CCDC66A2RUB6 948 aa10.06□□□□□ -0.8
CLIP1-218ENST00000545889 MPHOSPH6Q99547 160 aaKnown RBP10.06□□□□□ -0.8
CLIP1-218ENST00000545889 LOC102724428A0A0B4J2F2 783 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 SIK1P57059 783 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 DMTNQ08495 405 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 ZNF830Q96NB3 372 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-218ENST00000545889 VEZTQ9HBM0 779 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 DYNC1I1O14576 645 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 RANBP6O60518 1105 aaKnown RBP10.05□□□□□ -0.8
CLIP1-218ENST00000545889 ALDH1L1O75891 902 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 NEBLO76041 1014 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 KIF20AO95235 890 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 CA8P35219 290 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 KLHDC4Q8TBB5 520 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 KIF1BPQ96EK5 621 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 NSFL1CQ9UNZ2 370 aaKnown RBP10.05□□□□□ -0.8
CLIP1-218ENST00000545889 F8W031 263 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-218ENST00000545889 APBA3O96018 575 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 CCDC152Q4G0S7 254 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 SPTY2D1Q68D10 685 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-218ENST00000545889 IQCA1Q86XH1 822 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 ANKRD44Q8N8A2 993 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 DNAI2Q9GZS0 605 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 MAGEC2Q9UBF1 373 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-218ENST00000545889 ZBTB1Q9Y2K1 713 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 GJA3Q9Y6H8 435 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 CDKL5O76039 1030 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 IMMTQ16891 758 aaKnown RBP10.05□□□□□ -0.8
CLIP1-218ENST00000545889 CEP85Q6P2H3 762 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 ANKRD18AQ8IVF6 992 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 GTPBP4Q9BZE4 634 aaKnown RBP10.05□□□□□ -0.8
CLIP1-218ENST00000545889 CYP46A1Q9Y6A2 500 aa10.05□□□□□ -0.8
CLIP1-218ENST00000545889 RNF123Q5XPI4 1314 aa10.04□□□□□ -0.8
CLIP1-218ENST00000545889 BOLA2Q9H3K6 86 aa10.04□□□□□ -0.8
CLIP1-218ENST00000545889 CCDC87Q9NVE4 849 aa10.04□□□□□ -0.8
CLIP1-218ENST00000545889 ERBB4Q15303 1308 aa10.04□□□□□ -0.8
CLIP1-218ENST00000545889 DESP17661 470 aa10.04□□□□□ -0.8
CLIP1-218ENST00000545889 CTCFLQ8NI51 663 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-218ENST00000545889 CRB1P82279 1406 aa10.04□□□□□ -0.8
CLIP1-218ENST00000545889 KDRP35968 1356 aa10.04□□□□□ -0.8
CLIP1-218ENST00000545889 PLBD2Q8NHP8 589 aa10.04□□□□□ -0.8
CLIP1-218ENST00000545889 METTL22Q9BUU2 404 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-218ENST00000545889 KINO60870 393 aaKnown RBP10.03□□□□□ -0.8
CLIP1-218ENST00000545889 STK3Q13188 491 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 SKOR2Q2VWA4 1001 aaPredicted RBP10.03□□□□□ -0.8
CLIP1-218ENST00000545889 TRAPPC3LQ5T215 181 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 BLOC1S2Q6QNY1 142 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 HOMER1Q86YM7 354 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 SSH2Q76I76 1423 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 HCLS1P14317 486 aaPredicted RBP10.03□□□□□ -0.8
CLIP1-218ENST00000545889 NUCB2P80303 420 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 TRMT1LQ7Z2T5 733 aaKnown RBP10.03□□□□□ -0.8
CLIP1-218ENST00000545889 BICC1Q9H694 974 aaKnown RBP10.03□□□□□ -0.8
CLIP1-218ENST00000545889 ATP8B2P98198 1209 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 STIM1Q13586 685 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 GJD4Q96KN9 370 aaPredicted RBP10.03□□□□□ -0.8
CLIP1-218ENST00000545889 WDR70Q9NW82 654 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 MX1P20591 662 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 RXRBP28702 533 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 KRT27Q7Z3Y8 459 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 RNF214Q8ND24 703 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 DRC1Q96MC2 740 aa10.03□□□□□ -0.8
CLIP1-218ENST00000545889 SOS1Q07889 1333 aaPredicted RBP10.02□□□□□ -0.8
CLIP1-218ENST00000545889 EYA3Q99504 573 aa10.02□□□□□ -0.8
CLIP1-218ENST00000545889 PNMA6EA0A0J9YXQ4 647 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 CEBPZQ03701 1054 aaKnown RBP10.02□□□□□ -0.81
CLIP1-218ENST00000545889 HDAC1Q13547 482 aaPredicted RBP10.02□□□□□ -0.81
CLIP1-218ENST00000545889 ANKRD1Q15327 319 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 PDCL2Q8N4E4 241 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 ZNF396Q96N95 335 aaPredicted RBP10.02□□□□□ -0.81
CLIP1-218ENST00000545889 NYXQ9GZU5 481 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 EHMT1Q9H9B1 1298 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 RHPN1Q8TCX5 695 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 USP44Q9H0E7 712 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 ATG3Q9NT62 314 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 RGPD8O14715 1765 aaPredicted RBP10.02□□□□□ -0.81
CLIP1-218ENST00000545889 IRS4O14654 1257 aaPredicted RBP10.02□□□□□ -0.81
CLIP1-218ENST00000545889 HELBQ8NG08 1087 aaPredicted RBP10.02□□□□□ -0.81
CLIP1-218ENST00000545889 ZBTB9Q96C00 473 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 C22orf23Q9BZE7 217 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 TANGO6Q9C0B7 1094 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 SNRKQ9NRH2 765 aa10.02□□□□□ -0.81
CLIP1-218ENST00000545889 THRAP3Q9Y2W1 955 aaKnown RBP10.02□□□□□ -0.81
CLIP1-218ENST00000545889 BRPF1P55201 1214 aaPredicted RBP10.01□□□□□ -0.81
CLIP1-218ENST00000545889 FILIP1LQ4L180 1135 aa10.01□□□□□ -0.81
CLIP1-218ENST00000545889 ZNF772Q68DY9 489 aaPredicted RBP10.01□□□□□ -0.81
CLIP1-218ENST00000545889 SMIM5Q71RC9 77 aa10.01□□□□□ -0.81
CLIP1-218ENST00000545889 SUCLG2Q96I99 432 aa10.01□□□□□ -0.81
CLIP1-218ENST00000545889 NAT10Q9H0A0 1025 aaKnown RBP10.01□□□□□ -0.81
CLIP1-218ENST00000545889 MAP3K9P80192 1104 aa10.01□□□□□ -0.81
CLIP1-218ENST00000545889 MARCH10Q8NA82 808 aaPredicted RBP10.01□□□□□ -0.81
CLIP1-218ENST00000545889 TSC1Q92574 1164 aa10.01□□□□□ -0.81
CLIP1-218ENST00000545889 SECISBP2LQ93073 1101 aaKnown RBP10.01□□□□□ -0.81
CLIP1-218ENST00000545889 SPATA31A1Q5TZJ5 1347 aa10.01□□□□□ -0.81
CLIP1-218ENST00000545889 KIF20BQ96Q89 1820 aa10.01□□□□□ -0.81
CLIP1-218ENST00000545889 CRKLP46109 303 aaKnown RBP10.01□□□□□ -0.81
CLIP1-218ENST00000545889 GCKRQ14397 625 aa10.01□□□□□ -0.81
CLIP1-218ENST00000545889 KRT32Q14532 448 aa10.01□□□□□ -0.81
CLIP1-218ENST00000545889 CWC27Q6UX04 472 aaKnown RBP10.01□□□□□ -0.81
CLIP1-218ENST00000545889 U3KPZ7 1027 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms