RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 KIF5BP33176 963 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 C14orf93Q9H972 538 aaKnown RBP8.98□□□□□ -0.97
VPS13D-211ENST00000543710 SYCP2Q9BX26 1530 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 ZNF76P36508 570 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 SMC1AQ14683 1233 aaKnown RBP8.98□□□□□ -0.97
VPS13D-211ENST00000543710 CRACR2AQ9BSW2 395 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 PIM2Q9P1W9 311 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 CEP126Q9P2H0 1117 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 TTC22Q5TAA0 569 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 CERS3Q8IU89 383 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 NUCB1Q02818 461 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 ARHGAP29Q52LW3 1261 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 NBPF15Q8N660 670 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 CEP112Q8N8E3 955 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 ZNF335Q9H4Z2 1342 aaPredicted RBP8.97□□□□□ -0.97
VPS13D-211ENST00000543710 CALM1P0DP23 149 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 CALM2P0DP24 149 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 CALM3P0DP25 149 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 TAF12Q16514 161 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 USP48Q86UV5 1035 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 LUZP1Q86V48 1076 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 SLC16A10Q8TF71 515 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 ALDH1L1O75891 902 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 KRT23Q9C075 422 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 LRP2BPQ9P2M1 347 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 FMNL1O95466 1100 aaPredicted RBP8.97□□□□□ -0.97
VPS13D-211ENST00000543710 APBB1IPQ7Z5R6 666 aaPredicted RBP8.97□□□□□ -0.97
VPS13D-211ENST00000543710 C2CD5Q86YS7 1000 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 TMEM94Q12767 1356 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 FIBPO43427 364 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 TOP1P11387 765 aaKnown RBP8.97□□□□□ -0.97
VPS13D-211ENST00000543710 FERMT1Q9BQL6 677 aa8.97□□□□□ -0.97
VPS13D-211ENST00000543710 ZEB2O60315 1214 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 KIF4AO95239 1232 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 GNAT2P19087 354 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 USP37Q86T82 979 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 GIMAP7Q8NHV1 300 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 SREK1Q8WXA9 508 aaKnown RBP8.96□□□□□ -0.97
VPS13D-211ENST00000543710 RASAL2Q9UJF2 1139 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 MAP3K12Q12852 859 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 NECTIN2Q92692 538 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 FERMT2Q96AC1 680 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 TBC1D32Q96NH3 1257 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 RNF181Q9P0P0 153 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 THRAP3Q9Y2W1 955 aaKnown RBP8.96□□□□□ -0.97
VPS13D-211ENST00000543710 NOS1P29475 1434 aa8.96□□□□□ -0.97
VPS13D-211ENST00000543710 CETN1Q12798 172 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 TRIM14Q14142 442 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 CROCCP2Q86T23 111 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 ANKRD2Q9GZV1 360 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 CCNA1P78396 465 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 SUPT20HL1Q3ZLR7 823 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 SPECC1LQ69YQ0 1117 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 CTR9Q6PD62 1173 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 KCNG4Q8TDN1 519 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 PPM1EQ8WY54 764 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 CLIP2Q9UDT6 1046 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 SSH2Q76I76 1423 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 LMBR1Q8WVP7 490 aa8.96□□□□□ -0.98
VPS13D-211ENST00000543710 INTS4Q96HW7 963 aaKnown RBP8.96□□□□□ -0.98
VPS13D-211ENST00000543710 RNF216Q9NWF9 866 aaPredicted RBP8.96□□□□□ -0.98
VPS13D-211ENST00000543710 ADCY10Q96PN6 1610 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 EIF4E1BA6NMX2 242 aaKnown RBP8.95□□□□□ -0.98
VPS13D-211ENST00000543710 OPA1O60313 960 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 PAFAH1B1P43034 410 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 TDO2P48775 406 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 SULT6B1Q6IMI4 303 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 PLVAPQ9BX97 442 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 V9GYY5 206 aaPredicted RBP8.95□□□□□ -0.98
VPS13D-211ENST00000543710 PPIP5K2O43314 1243 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 EIF5P55010 431 aaKnown RBP8.95□□□□□ -0.98
VPS13D-211ENST00000543710 NBPF1Q3BBV0 1214 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 DPP8Q6V1X1 898 aaPredicted RBP8.95□□□□□ -0.98
VPS13D-211ENST00000543710 CCDC117Q8IWD4 279 aaPredicted RBP8.95□□□□□ -0.98
VPS13D-211ENST00000543710 TMEM57Q8N5G2 664 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 IRX3P78415 501 aaPredicted RBP8.95□□□□□ -0.98
VPS13D-211ENST00000543710 CTCFLQ8NI51 663 aaPredicted RBP8.95□□□□□ -0.98
VPS13D-211ENST00000543710 SRGAP3O43295 1099 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 CALML4Q96GE6 196 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 TANGO6Q9C0B7 1094 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 AS3MTQ9HBK9 375 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.95□□□□□ -0.98
VPS13D-211ENST00000543710 NUP153P49790 1475 aaKnown RBP8.95□□□□□ -0.98
VPS13D-211ENST00000543710 MAGI2Q86UL8 1455 aa8.95□□□□□ -0.98
VPS13D-211ENST00000543710 BCAR3O75815 825 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 MYL6BP14649 208 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 DBF4Q9UBU7 674 aaPredicted RBP8.94□□□□□ -0.98
VPS13D-211ENST00000543710 USP25Q9UHP3 1055 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 CCDC85CA6NKD9 419 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 SPOUT1Q5T280 376 aaKnown RBP8.94□□□□□ -0.98
VPS13D-211ENST00000543710 PPP4R3CPQ6ZMV5 832 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 STK25O00506 426 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 CATIPQ7Z7H3 387 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 TTC37Q6PGP7 1564 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 HMGB1P1B2RPK0 211 aaPredicted RBP8.94□□□□□ -0.98
VPS13D-211ENST00000543710 GNAQP50148 359 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 ENOX2Q16206 610 aaKnown RBP8.94□□□□□ -0.98
VPS13D-211ENST00000543710 C8orf76Q96K31 380 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 KCNH4Q9UQ05 1017 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 MTMR7Q9Y216 660 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms