RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 GREM2Q9H772 168 aa15.62■□□□□ 0.09
VPS33A-207ENST00000542790 INTS3Q68E01 1043 aaKnown RBP15.61■□□□□ 0.09
VPS33A-207ENST00000542790 HDAC5Q9UQL6 1122 aa15.61■□□□□ 0.09
VPS33A-207ENST00000542790 ITGA6P23229 1130 aa15.6■□□□□ 0.09
VPS33A-207ENST00000542790 PRELPP51888 382 aa15.6■□□□□ 0.09
VPS33A-207ENST00000542790 LMBR1LQ6UX01 489 aa15.6■□□□□ 0.09
VPS33A-207ENST00000542790 DPP8Q6V1X1 898 aaPredicted RBP15.6■□□□□ 0.09
VPS33A-207ENST00000542790 MPNDQ8N594 471 aa15.6■□□□□ 0.09
VPS33A-207ENST00000542790 SUPT20HQ8NEM7 779 aa15.6■□□□□ 0.09
VPS33A-207ENST00000542790 RCAN3Q9UKA8 241 aa15.6■□□□□ 0.09
VPS33A-207ENST00000542790 TRPC6Q9Y210 931 aa15.6■□□□□ 0.09
VPS33A-207ENST00000542790 ZC3H4Q9UPT8 1303 aaKnown RBP15.6■□□□□ 0.09
VPS33A-207ENST00000542790 SLX4Q8IY92 1834 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 ARFGEF1Q9Y6D6 1849 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 ANKRD18BA2A2Z9 1011 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 PYGBP11216 843 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 IGHMBP2P38935 993 aaKnown RBP15.59■□□□□ 0.09
VPS33A-207ENST00000542790 IFIT5Q13325 482 aaKnown RBP15.59■□□□□ 0.09
VPS33A-207ENST00000542790 FAM161AQ3B820 660 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 EPHA10Q5JZY3 1008 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 CLUAP1Q96AJ1 413 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 SUCLG2Q96I99 432 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 DCBLD2Q96PD2 775 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 VPS33BQ9H267 617 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 ZNF277Q9NRM2 450 aaPredicted RBP15.59■□□□□ 0.09
VPS33A-207ENST00000542790 NSFL1CQ9UNZ2 370 aaKnown RBP15.59■□□□□ 0.09
VPS33A-207ENST00000542790 CHMP3Q9Y3E7 222 aa15.59■□□□□ 0.09
VPS33A-207ENST00000542790 UTRNP46939 3433 aa15.58■□□□□ 0.09
VPS33A-207ENST00000542790 GOLGB1Q14789 3259 aaKnown RBP15.58■□□□□ 0.08
VPS33A-207ENST00000542790 UBTFL1P0CB47 393 aaPredicted RBP15.58■□□□□ 0.08
VPS33A-207ENST00000542790 IARSP41252 1262 aaKnown RBP15.58■□□□□ 0.08
VPS33A-207ENST00000542790 CCDC57Q2TAC2 916 aa15.58■□□□□ 0.08
VPS33A-207ENST00000542790 FTSJ3Q8IY81 847 aaKnown RBP15.58■□□□□ 0.08
VPS33A-207ENST00000542790 KAZALD1Q96I82 304 aa15.58■□□□□ 0.08
VPS33A-207ENST00000542790 MPHOSPH8Q99549 860 aa15.58■□□□□ 0.08
VPS33A-207ENST00000542790 RTFDC1Q9BY42 306 aaPredicted RBP15.58■□□□□ 0.08
VPS33A-207ENST00000542790 BSDC1Q9NW68 430 aaPredicted RBP15.58■□□□□ 0.08
VPS33A-207ENST00000542790 SNED1Q8TER0 1413 aa15.58■□□□□ 0.08
VPS33A-207ENST00000542790 DDX60Q8IY21 1712 aaKnown RBP15.57■□□□□ 0.08
VPS33A-207ENST00000542790 GSE1Q14687 1217 aa15.57■□□□□ 0.08
VPS33A-207ENST00000542790 RABL6Q3YEC7 729 aaPredicted RBP15.57■□□□□ 0.08
VPS33A-207ENST00000542790 SLC51AQ86UW1 340 aa15.57■□□□□ 0.08
VPS33A-207ENST00000542790 ZNF784Q8NCA9 323 aaPredicted RBP15.57■□□□□ 0.08
VPS33A-207ENST00000542790 BICC1Q9H694 974 aaKnown RBP15.57■□□□□ 0.08
VPS33A-207ENST00000542790 GNAI3P08754 354 aa15.56■□□□□ 0.08
VPS33A-207ENST00000542790 MS4A1P11836 297 aa15.56■□□□□ 0.08
VPS33A-207ENST00000542790 GPSM2P81274 684 aa15.56■□□□□ 0.08
VPS33A-207ENST00000542790 TAF7LQ5H9L4 462 aa15.56■□□□□ 0.08
VPS33A-207ENST00000542790 DZIP1LQ8IYY4 767 aaKnown RBP15.56■□□□□ 0.08
VPS33A-207ENST00000542790 JDP2Q8WYK2 163 aa15.56■□□□□ 0.08
VPS33A-207ENST00000542790 PODXL2Q9NZ53 605 aa15.56■□□□□ 0.08
VPS33A-207ENST00000542790 ANKIB1Q9P2G1 1089 aa15.56■□□□□ 0.08
VPS33A-207ENST00000542790 TNNQ9UQP3 1299 aa15.56■□□□□ 0.08
VPS33A-207ENST00000542790 DPY19L2Q6NUT2 758 aa15.55■□□□□ 0.08
VPS33A-207ENST00000542790 LARGE2Q8N3Y3 721 aa15.55■□□□□ 0.08
VPS33A-207ENST00000542790 TMEM57Q8N5G2 664 aa15.55■□□□□ 0.08
VPS33A-207ENST00000542790 MINPP1Q9UNW1 487 aa15.55■□□□□ 0.08
VPS33A-207ENST00000542790 C6orf229H3BNL8 230 aa15.54■□□□□ 0.08
VPS33A-207ENST00000542790 PPIP5K2O43314 1243 aa15.54■□□□□ 0.08
VPS33A-207ENST00000542790 ANKRD44Q8N8A2 993 aa15.54■□□□□ 0.08
VPS33A-207ENST00000542790 EYA3Q99504 573 aa15.54■□□□□ 0.08
VPS33A-207ENST00000542790 MEIS3Q99687 375 aa15.54■□□□□ 0.08
VPS33A-207ENST00000542790 PCDHB13Q9Y5F0 798 aa15.54■□□□□ 0.08
VPS33A-207ENST00000542790 LAMB2P55268 1798 aa15.54■□□□□ 0.08
VPS33A-207ENST00000542790 XDHP47989 1333 aa15.53■□□□□ 0.08
VPS33A-207ENST00000542790 KDM2BQ8NHM5 1336 aa15.53■□□□□ 0.08
VPS33A-207ENST00000542790 KIAA2012Q0VF49 1180 aa15.53■□□□□ 0.08
VPS33A-207ENST00000542790 WASHC4Q2M389 1173 aa15.53■□□□□ 0.08
VPS33A-207ENST00000542790 LDHAL6AQ6ZMR3 332 aa15.53■□□□□ 0.08
VPS33A-207ENST00000542790 IFNL1Q8IU54 200 aa15.53■□□□□ 0.08
VPS33A-207ENST00000542790 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.53■□□□□ 0.08
VPS33A-207ENST00000542790 TBC1D16Q8TBP0 767 aa15.53■□□□□ 0.08
VPS33A-207ENST00000542790 ZNF526Q8TF50 670 aaPredicted RBP15.53■□□□□ 0.08
VPS33A-207ENST00000542790 ANKRD2Q9GZV1 360 aa15.53■□□□□ 0.08
VPS33A-207ENST00000542790 GPBP1L1Q9HC44 474 aaPredicted RBP15.53■□□□□ 0.08
VPS33A-207ENST00000542790 POLLQ9UGP5 575 aa15.53■□□□□ 0.08
VPS33A-207ENST00000542790 GGA1Q9UJY5 639 aa15.53■□□□□ 0.08
VPS33A-207ENST00000542790 GLTPD2A6NH11 291 aa15.52■□□□□ 0.08
VPS33A-207ENST00000542790 ATP2B4P23634 1241 aa15.52■□□□□ 0.08
VPS33A-207ENST00000542790 AOC3Q16853 763 aa15.52■□□□□ 0.08
VPS33A-207ENST00000542790 ITPRIPQ8IWB1 547 aa15.52■□□□□ 0.08
VPS33A-207ENST00000542790 NIM1KQ8IY84 436 aa15.52■□□□□ 0.08
VPS33A-207ENST00000542790 ZC3H12CQ9C0D7 883 aaKnown RBP15.52■□□□□ 0.08
VPS33A-207ENST00000542790 CIZ1Q9ULV3 898 aaPredicted RBP15.52■□□□□ 0.08
VPS33A-207ENST00000542790 LRRFIP2Q9Y608 721 aaKnown RBP15.52■□□□□ 0.08
VPS33A-207ENST00000542790 FZD9O00144 591 aa15.51■□□□□ 0.07
VPS33A-207ENST00000542790 UFL1O94874 794 aa15.51■□□□□ 0.07
VPS33A-207ENST00000542790 GNAI2P04899 355 aa15.51■□□□□ 0.07
VPS33A-207ENST00000542790 RLBP1P12271 317 aa15.51■□□□□ 0.07
VPS33A-207ENST00000542790 ZNF594Q96JF6 807 aaPredicted RBP15.51■□□□□ 0.07
VPS33A-207ENST00000542790 CNNM1Q9NRU3 951 aa15.51■□□□□ 0.07
VPS33A-207ENST00000542790 EIF6P56537 245 aaKnown RBP15.5■□□□□ 0.07
VPS33A-207ENST00000542790 CHRNDQ07001 517 aa15.5■□□□□ 0.07
VPS33A-207ENST00000542790 PANK1Q8TE04 598 aa15.5■□□□□ 0.07
VPS33A-207ENST00000542790 ZNRF3Q9ULT6 936 aa15.5■□□□□ 0.07
VPS33A-207ENST00000542790 LEMD3Q9Y2U8 911 aa15.5■□□□□ 0.07
VPS33A-207ENST00000542790 COL4A1P02462 1669 aa15.5■□□□□ 0.07
VPS33A-207ENST00000542790 FER1L6Q2WGJ9 1857 aa15.5■□□□□ 0.07
VPS33A-207ENST00000542790 CHD4Q14839 1912 aa15.49■□□□□ 0.07
VPS33A-207ENST00000542790 RIMBP2O15034 1052 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms