RNA–Protein interactions for RNA: ENST00000542685.5

XRCC4-206, Transcript of X-ray repair cross complementing 4, humanhuman

TSL 1 (best)

Gene XRCC4, Length 1,243 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-206ENST00000542685 OR13H1Q8NG92 308 aa9.51□□□□□ -0.89
XRCC4-206ENST00000542685 HELQQ8TDG4 1101 aa9.51□□□□□ -0.89
XRCC4-206ENST00000542685 LENG1Q96BZ8 264 aaPredicted RBP9.51□□□□□ -0.89
XRCC4-206ENST00000542685 NUDT16Q96DE0 195 aaKnown RBP9.51□□□□□ -0.89
XRCC4-206ENST00000542685 SEMA6BQ9H3T3 888 aa9.51□□□□□ -0.89
XRCC4-206ENST00000542685 USP21Q9UK80 565 aa9.51□□□□□ -0.89
XRCC4-206ENST00000542685 HOXD8P13378 290 aaPredicted RBP9.5□□□□□ -0.89
XRCC4-206ENST00000542685 SSFA2P28290 1259 aa9.5□□□□□ -0.89
XRCC4-206ENST00000542685 ADGRE1Q14246 886 aa9.5□□□□□ -0.89
XRCC4-206ENST00000542685 MBTPS1Q14703 1052 aa9.5□□□□□ -0.89
XRCC4-206ENST00000542685 DTWD1Q8N5C7 304 aa9.5□□□□□ -0.89
XRCC4-206ENST00000542685 GTF3C2Q8WUA4 911 aaPredicted RBP9.5□□□□□ -0.89
XRCC4-206ENST00000542685 NRG1Q02297 640 aaPredicted RBP9.49□□□□□ -0.89
XRCC4-206ENST00000542685 COL13A1Q5TAT6 717 aaPredicted RBP9.49□□□□□ -0.89
XRCC4-206ENST00000542685 FBXO11Q86XK2 927 aa9.49□□□□□ -0.89
XRCC4-206ENST00000542685 IL22RA1Q8N6P7 574 aa9.49□□□□□ -0.89
XRCC4-206ENST00000542685 ABI2Q9NYB9 513 aaPredicted RBP9.49□□□□□ -0.89
XRCC4-206ENST00000542685 DNM1Q05193 864 aaKnown RBP9.48□□□□□ -0.89
XRCC4-206ENST00000542685 HYAL2Q12891 473 aa9.48□□□□□ -0.89
XRCC4-206ENST00000542685 RSPO4Q2I0M5 234 aaPredicted RBP9.48□□□□□ -0.89
XRCC4-206ENST00000542685 TRIM33Q9UPN9 1127 aa9.48□□□□□ -0.89
XRCC4-206ENST00000542685 DEAF1O75398 565 aaPredicted RBP9.47□□□□□ -0.89
XRCC4-206ENST00000542685 MTMR3Q13615 1198 aa9.47□□□□□ -0.89
XRCC4-206ENST00000542685 NOM1Q5C9Z4 860 aaKnown RBP9.47□□□□□ -0.89
XRCC4-206ENST00000542685 ZNF438Q7Z4V0 828 aa9.47□□□□□ -0.89
XRCC4-206ENST00000542685 TXNRD3Q86VQ6 643 aa9.47□□□□□ -0.89
XRCC4-206ENST00000542685 EDEM1Q92611 657 aa9.47□□□□□ -0.89
XRCC4-206ENST00000542685 SPACA7Q96KW9 195 aa9.47□□□□□ -0.89
XRCC4-206ENST00000542685 ELP3Q9H9T3 547 aa9.47□□□□□ -0.89
XRCC4-206ENST00000542685 CYP2E1P05181 493 aaPredicted RBP9.46□□□□□ -0.9
XRCC4-206ENST00000542685 MPSTP25325 297 aa9.46□□□□□ -0.9
XRCC4-206ENST00000542685 ATP11AP98196 1134 aa9.46□□□□□ -0.9
XRCC4-206ENST00000542685 PDE12Q6L8Q7 609 aaKnown RBP9.46□□□□□ -0.9
XRCC4-206ENST00000542685 TMEM63CQ9P1W3 806 aa9.46□□□□□ -0.9
XRCC4-206ENST00000542685 PCSK2P16519 638 aa9.45□□□□□ -0.9
XRCC4-206ENST00000542685 EIF1AXP47813 144 aaKnown RBP9.45□□□□□ -0.9
XRCC4-206ENST00000542685 C8orf34Q49A92 452 aa9.45□□□□□ -0.9
XRCC4-206ENST00000542685 NKAPLQ5M9Q1 402 aa9.45□□□□□ -0.9
XRCC4-206ENST00000542685 CEP135Q66GS9 1140 aa9.45□□□□□ -0.9
XRCC4-206ENST00000542685 ITGB7P26010 798 aa9.44□□□□□ -0.9
XRCC4-206ENST00000542685 AAMPQ13685 434 aa9.44□□□□□ -0.9
XRCC4-206ENST00000542685 IGF2-ASQ6U949 168 aa9.44□□□□□ -0.9
XRCC4-206ENST00000542685 TTC16Q8NEE8 873 aa9.44□□□□□ -0.9
XRCC4-206ENST00000542685 PDGFAP04085 211 aa9.43□□□□□ -0.9
XRCC4-206ENST00000542685 RPLP1P05386 114 aaKnown RBP9.43□□□□□ -0.9
XRCC4-206ENST00000542685 IREB2P48200 963 aaKnown RBP9.43□□□□□ -0.9
XRCC4-206ENST00000542685 PHLDB3Q6NSJ2 640 aa9.43□□□□□ -0.9
XRCC4-206ENST00000542685 NCAPG2Q86XI2 1143 aa9.43□□□□□ -0.9
XRCC4-206ENST00000542685 ARID3AQ99856 593 aa9.43□□□□□ -0.9
XRCC4-206ENST00000542685 LACRTQ9GZZ8 138 aa9.43□□□□□ -0.9
XRCC4-206ENST00000542685 GGNBP2Q9H3C7 697 aa9.43□□□□□ -0.9
XRCC4-206ENST00000542685 CNTN3Q9P232 1028 aa9.43□□□□□ -0.9
XRCC4-206ENST00000542685 KANSL3Q9P2N6 904 aa9.43□□□□□ -0.9
XRCC4-206ENST00000542685 A6NHS1 94 aa9.42□□□□□ -0.9
XRCC4-206ENST00000542685 DLL1O00548 723 aa9.42□□□□□ -0.9
XRCC4-206ENST00000542685 DYRK3O43781 588 aa9.42□□□□□ -0.9
XRCC4-206ENST00000542685 SMNDC1O75940 238 aaKnown RBP eCLIP9.42□□□□□ -0.9
XRCC4-206ENST00000542685 WFDC12Q8WWY7 111 aa9.42□□□□□ -0.9
XRCC4-206ENST00000542685 TP53INP1Q96A56 240 aa9.42□□□□□ -0.9
XRCC4-206ENST00000542685 RASSF4Q9H2L5 321 aa9.42□□□□□ -0.9
XRCC4-206ENST00000542685 KIF4AO95239 1232 aa9.41□□□□□ -0.9
XRCC4-206ENST00000542685 ABL1P00519 1130 aa9.41□□□□□ -0.9
XRCC4-206ENST00000542685 MZF1P28698 734 aaPredicted RBP9.41□□□□□ -0.9
XRCC4-206ENST00000542685 MTMR7Q9Y216 660 aa9.41□□□□□ -0.9
XRCC4-206ENST00000542685 PPME1Q9Y570 386 aa9.41□□□□□ -0.9
XRCC4-206ENST00000542685 LINC01387J3KSC0 135 aa9.4□□□□□ -0.9
XRCC4-206ENST00000542685 NOS3P29474 1203 aa9.4□□□□□ -0.9
XRCC4-206ENST00000542685 CDC25BP30305 580 aa9.4□□□□□ -0.9
XRCC4-206ENST00000542685 SETDB1Q15047 1291 aa9.4□□□□□ -0.9
XRCC4-206ENST00000542685 ALKBH2Q6NS38 261 aa9.4□□□□□ -0.9
XRCC4-206ENST00000542685 CACTIN-AS1Q8N1I8 211 aa9.4□□□□□ -0.9
XRCC4-206ENST00000542685 C1orf127Q8N9H9 656 aa9.4□□□□□ -0.9
XRCC4-206ENST00000542685 ANO2Q9NQ90 1003 aa9.4□□□□□ -0.9
XRCC4-206ENST00000542685 POLIQ9UNA4 740 aa9.4□□□□□ -0.9
XRCC4-206ENST00000542685 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.4□□□□□ -0.9
XRCC4-206ENST00000542685 SUPT5HO00267 1087 aaKnown RBP9.39□□□□□ -0.91
XRCC4-206ENST00000542685 CES1P23141 567 aa9.39□□□□□ -0.91
XRCC4-206ENST00000542685 TXNDC11Q6PKC3 985 aa9.39□□□□□ -0.91
XRCC4-206ENST00000542685 XKR5Q6UX68 686 aa9.39□□□□□ -0.91
XRCC4-206ENST00000542685 CEP120Q8N960 986 aa9.39□□□□□ -0.91
XRCC4-206ENST00000542685 PBX4Q9BYU1 374 aa9.39□□□□□ -0.91
XRCC4-206ENST00000542685 MUC3BQ9H195 1237 aa9.39□□□□□ -0.91
XRCC4-206ENST00000542685 FAM13AO94988 1023 aa9.38□□□□□ -0.91
XRCC4-206ENST00000542685 ZNF211Q13398 564 aaPredicted RBP9.38□□□□□ -0.91
XRCC4-206ENST00000542685 ADAMTSL4Q6UY14 1074 aa9.38□□□□□ -0.91
XRCC4-206ENST00000542685 SRA1Q9HD15 236 aaKnown RBP9.38□□□□□ -0.91
XRCC4-206ENST00000542685 ALX3O95076 343 aa9.37□□□□□ -0.91
XRCC4-206ENST00000542685 CDC27P30260 824 aa9.37□□□□□ -0.91
XRCC4-206ENST00000542685 FKBP4Q02790 459 aaKnown RBP eCLIP9.37□□□□□ -0.91
XRCC4-206ENST00000542685 MAP4K3Q8IVH8 894 aa9.37□□□□□ -0.91
XRCC4-206ENST00000542685 SSBP4Q9BWG4 385 aaPredicted RBP9.37□□□□□ -0.91
XRCC4-206ENST00000542685 ACPPP15309 386 aa9.36□□□□□ -0.91
XRCC4-206ENST00000542685 NPR3P17342 541 aa9.36□□□□□ -0.91
XRCC4-206ENST00000542685 SF3B2Q13435 895 aaKnown RBP9.36□□□□□ -0.91
XRCC4-206ENST00000542685 PRSS36Q5K4E3 855 aa9.36□□□□□ -0.91
XRCC4-206ENST00000542685 ZMYM1Q5SVZ6 1142 aa9.36□□□□□ -0.91
XRCC4-206ENST00000542685 MEGF10Q96KG7 1140 aa9.36□□□□□ -0.91
XRCC4-206ENST00000542685 POP1Q99575 1024 aaKnown RBP9.36□□□□□ -0.91
XRCC4-206ENST00000542685 MRPL18Q9H0U6 180 aaKnown RBP9.36□□□□□ -0.91
XRCC4-206ENST00000542685 AKTIPQ9H8T0 292 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 120.4 ms