RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 LAS1LQ9Y4W2 734 aaKnown RBP23.26■■□□□ 1.31
CLSTN3-214ENST00000542663 RBM26Q5T8P6 1007 aaKnown RBP23.25■■□□□ 1.31
CLSTN3-214ENST00000542663 TBC1D16Q8TBP0 767 aa23.25■■□□□ 1.31
CLSTN3-214ENST00000542663 CFAP44Q96MT7 982 aa23.25■■□□□ 1.31
CLSTN3-214ENST00000542663 DBF4Q9UBU7 674 aaPredicted RBP23.25■■□□□ 1.31
CLSTN3-214ENST00000542663 MYH3P11055 1940 aa23.25■■□□□ 1.31
CLSTN3-214ENST00000542663 HOXB7P09629 217 aa23.24■■□□□ 1.31
CLSTN3-214ENST00000542663 RALBP1Q15311 655 aa23.24■■□□□ 1.31
CLSTN3-214ENST00000542663 DCPSQ96C86 337 aaKnown RBP23.24■■□□□ 1.31
CLSTN3-214ENST00000542663 C2orf69Q8N8R5 385 aa23.23■■□□□ 1.31
CLSTN3-214ENST00000542663 EYA3Q99504 573 aa23.23■■□□□ 1.31
CLSTN3-214ENST00000542663 ASTN2O75129 1339 aaPredicted RBP23.23■■□□□ 1.31
CLSTN3-214ENST00000542663 IRS4O14654 1257 aaPredicted RBP23.22■■□□□ 1.31
CLSTN3-214ENST00000542663 RPS8P62241 208 aaKnown RBP23.22■■□□□ 1.31
CLSTN3-214ENST00000542663 KIF23Q02241 960 aaPredicted RBP23.22■■□□□ 1.31
CLSTN3-214ENST00000542663 TRIM28Q13263 835 aaKnown RBP23.22■■□□□ 1.31
CLSTN3-214ENST00000542663 KIF4BQ2VIQ3 1234 aa23.22■■□□□ 1.31
CLSTN3-214ENST00000542663 SAGE1Q9NXZ1 904 aa23.22■■□□□ 1.31
CLSTN3-214ENST00000542663 VIL1P09327 827 aaKnown RBP23.21■■□□□ 1.31
CLSTN3-214ENST00000542663 CCDC102AQ96A19 550 aa23.21■■□□□ 1.31
CLSTN3-214ENST00000542663 PODXL2Q9NZ53 605 aa23.21■■□□□ 1.31
CLSTN3-214ENST00000542663 ZNF609O15014 1411 aa23.21■■□□□ 1.31
CLSTN3-214ENST00000542663 PAPPA2Q9BXP8 1791 aa23.2■■□□□ 1.3
CLSTN3-214ENST00000542663 ZNF157P51786 506 aaPredicted RBP23.2■■□□□ 1.3
CLSTN3-214ENST00000542663 SEC31BQ9NQW1 1179 aa23.2■■□□□ 1.3
CLSTN3-214ENST00000542663 HYPKQ9NX55 129 aa23.2■■□□□ 1.3
CLSTN3-214ENST00000542663 GGA3Q9NZ52 723 aa23.2■■□□□ 1.3
CLSTN3-214ENST00000542663 PDE4DIPQ5VU43 2346 aa23.19■■□□□ 1.3
CLSTN3-214ENST00000542663 SLC10A3P09131 477 aa23.19■■□□□ 1.3
CLSTN3-214ENST00000542663 DUSP27Q5VZP5 1158 aa23.19■■□□□ 1.3
CLSTN3-214ENST00000542663 RUNDC1Q96C34 613 aa23.19■■□□□ 1.3
CLSTN3-214ENST00000542663 RNF186Q9NXI6 227 aa23.19■■□□□ 1.3
CLSTN3-214ENST00000542663 ZC3H12CQ9C0D7 883 aaKnown RBP23.18■■□□□ 1.3
CLSTN3-214ENST00000542663 MYBBP1AQ9BQG0 1328 aaKnown RBP23.17■■□□□ 1.3
CLSTN3-214ENST00000542663 TRPA1O75762 1119 aa23.17■■□□□ 1.3
CLSTN3-214ENST00000542663 SULF1Q8IWU6 871 aa23.17■■□□□ 1.3
CLSTN3-214ENST00000542663 ZBTB38Q8NAP3 1195 aaPredicted RBP23.17■■□□□ 1.3
CLSTN3-214ENST00000542663 CDCA5Q96FF9 252 aa23.17■■□□□ 1.3
CLSTN3-214ENST00000542663 CSRNP1Q96S65 589 aa23.17■■□□□ 1.3
CLSTN3-214ENST00000542663 UFL1O94874 794 aa23.16■■□□□ 1.3
CLSTN3-214ENST00000542663 ZNF280AP59817 542 aaPredicted RBP23.16■■□□□ 1.3
CLSTN3-214ENST00000542663 PHAXQ9H814 394 aaKnown RBP23.16■■□□□ 1.3
CLSTN3-214ENST00000542663 MBIPQ9NS73 344 aa23.16■■□□□ 1.3
CLSTN3-214ENST00000542663 ANKIB1Q9P2G1 1089 aa23.15■■□□□ 1.3
CLSTN3-214ENST00000542663 SCARF1Q14162 830 aa23.14■■□□□ 1.29
CLSTN3-214ENST00000542663 ANGEL2Q5VTE6 544 aaKnown RBP23.14■■□□□ 1.29
CLSTN3-214ENST00000542663 RSBN1LQ6PCB5 846 aaPredicted RBP23.14■■□□□ 1.29
CLSTN3-214ENST00000542663 RIC3Q7Z5B4 369 aa23.14■■□□□ 1.29
CLSTN3-214ENST00000542663 AGBL3Q8NEM8 1001 aa23.14■■□□□ 1.29
CLSTN3-214ENST00000542663 GGA1Q9UJY5 639 aa23.14■■□□□ 1.29
CLSTN3-214ENST00000542663 ADAMTS8Q9UP79 889 aa23.14■■□□□ 1.29
CLSTN3-214ENST00000542663 RASAL3Q86YV0 1011 aa23.13■■□□□ 1.29
CLSTN3-214ENST00000542663 GMLQ99445 158 aa23.13■■□□□ 1.29
CLSTN3-214ENST00000542663 ZNF853P0CG23 659 aa23.12■■□□□ 1.29
CLSTN3-214ENST00000542663 MYD88Q99836 296 aa23.12■■□□□ 1.29
CLSTN3-214ENST00000542663 G3V3G9 751 aa23.11■■□□□ 1.29
CLSTN3-214ENST00000542663 PCCAP05165 728 aaPredicted RBP23.11■■□□□ 1.29
CLSTN3-214ENST00000542663 SOX10P56693 466 aa23.11■■□□□ 1.29
CLSTN3-214ENST00000542663 GOLGA2Q08379 1002 aa23.11■■□□□ 1.29
CLSTN3-214ENST00000542663 CCDC152Q4G0S7 254 aa23.11■■□□□ 1.29
CLSTN3-214ENST00000542663 DCAF8Q5TAQ9 597 aa23.11■■□□□ 1.29
CLSTN3-214ENST00000542663 JARID2Q92833 1246 aaPredicted RBP23.11■■□□□ 1.29
CLSTN3-214ENST00000542663 PDE8AO60658 829 aa23.1■■□□□ 1.29
CLSTN3-214ENST00000542663 WDR43Q15061 677 aaKnown RBP eCLIP23.1■■□□□ 1.29
CLSTN3-214ENST00000542663 CCDC191Q8NCU4 936 aa23.1■■□□□ 1.29
CLSTN3-214ENST00000542663 CCDC85AQ96PX6 553 aaPredicted RBP23.1■■□□□ 1.29
CLSTN3-214ENST00000542663 XDHP47989 1333 aa23.09■■□□□ 1.29
CLSTN3-214ENST00000542663 PITPNM2Q9BZ72 1349 aa23.09■■□□□ 1.29
CLSTN3-214ENST00000542663 WTIPA6NIX2 430 aaPredicted RBP23.09■■□□□ 1.29
CLSTN3-214ENST00000542663 MYOZ2Q9NPC6 264 aa23.09■■□□□ 1.29
CLSTN3-214ENST00000542663 SCAF8Q9UPN6 1271 aaKnown RBP23.09■■□□□ 1.29
CLSTN3-214ENST00000542663 USP17L8P0C7I0 530 aa23.08■■□□□ 1.29
CLSTN3-214ENST00000542663 HSP90B1P14625 803 aaKnown RBP23.08■■□□□ 1.29
CLSTN3-214ENST00000542663 MOB2Q70IA6 237 aa23.08■■□□□ 1.29
CLSTN3-214ENST00000542663 ELL2O00472 640 aaPredicted RBP23.07■■□□□ 1.28
CLSTN3-214ENST00000542663 FKBP1BP68106 108 aa23.07■■□□□ 1.28
CLSTN3-214ENST00000542663 CTU1Q7Z7A3 348 aaKnown RBP23.07■■□□□ 1.28
CLSTN3-214ENST00000542663 REM2Q8IYK8 340 aaPredicted RBP23.07■■□□□ 1.28
CLSTN3-214ENST00000542663 CWC25Q9NXE8 425 aaPredicted RBP23.07■■□□□ 1.28
CLSTN3-214ENST00000542663 ECM29Q5VYK3 1845 aa23.07■■□□□ 1.28
CLSTN3-214ENST00000542663 LAMB1P07942 1786 aa23.06■■□□□ 1.28
CLSTN3-214ENST00000542663 USP17L3A6NCW0 530 aa23.06■■□□□ 1.28
CLSTN3-214ENST00000542663 USP17L4A6NCW7 530 aa23.06■■□□□ 1.28
CLSTN3-214ENST00000542663 USP17L1Q7RTZ2 530 aa23.06■■□□□ 1.28
CLSTN3-214ENST00000542663 PODNQ7Z5L7 613 aa23.06■■□□□ 1.28
CLSTN3-214ENST00000542663 ANKRD18AQ8IVF6 992 aa23.06■■□□□ 1.28
CLSTN3-214ENST00000542663 METTL22Q9BUU2 404 aaPredicted RBP23.06■■□□□ 1.28
CLSTN3-214ENST00000542663 A0A1B0GUL6 1792 aa23.05■■□□□ 1.28
CLSTN3-214ENST00000542663 DDX10Q13206 875 aaKnown RBP23.05■■□□□ 1.28
CLSTN3-214ENST00000542663 IFT57Q9NWB7 429 aa23.05■■□□□ 1.28
CLSTN3-214ENST00000542663 MED23Q9ULK4 1368 aa23.04■■□□□ 1.28
CLSTN3-214ENST00000542663 ATP2B4P23634 1241 aa23.04■■□□□ 1.28
CLSTN3-214ENST00000542663 NBPF9Q3BBW0 867 aa23.04■■□□□ 1.28
CLSTN3-214ENST00000542663 C8orf58Q8NAV2 365 aa23.04■■□□□ 1.28
CLSTN3-214ENST00000542663 PRAMEF18Q5VWM3 479 aa23.03■■□□□ 1.28
CLSTN3-214ENST00000542663 UBE2Q2LH0YL09 131 aa23.02■■□□□ 1.28
CLSTN3-214ENST00000542663 CTSWP56202 376 aa23.02■■□□□ 1.28
CLSTN3-214ENST00000542663 GNAI1P63096 354 aa23.02■■□□□ 1.28
CLSTN3-214ENST00000542663 MXD3Q9BW11 206 aa23.02■■□□□ 1.28
CLSTN3-214ENST00000542663 DACT2Q5SW24 774 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms