RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 HYAL2Q12891 473 aa5.76□□□□□ -1.49
USP28-210ENST00000542033 XKR5Q6UX68 686 aa5.76□□□□□ -1.49
USP28-210ENST00000542033 C20orf204Q6ZNR8 217 aa5.76□□□□□ -1.49
USP28-210ENST00000542033 OR13H1Q8NG92 308 aa5.76□□□□□ -1.49
USP28-210ENST00000542033 SPACA7Q96KW9 195 aa5.76□□□□□ -1.49
USP28-210ENST00000542033 ELP3Q9H9T3 547 aa5.76□□□□□ -1.49
USP28-210ENST00000542033 LOC102724428A0A0B4J2F2 783 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 FZD6O60353 706 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 SIK1P57059 783 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 MLLT1Q03111 559 aaPredicted RBP5.75□□□□□ -1.49
USP28-210ENST00000542033 PRRT3Q5FWE3 981 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 TMC1Q8TDI8 760 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 NUDT8Q8WV74 236 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 TTC9Q92623 222 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 PMEPA1Q969W9 287 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 NSUN5Q96P11 429 aaKnown RBP5.75□□□□□ -1.49
USP28-210ENST00000542033 PLVAPQ9BX97 442 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 GZF1Q9H116 711 aaPredicted RBP5.75□□□□□ -1.49
USP28-210ENST00000542033 CCDC87Q9NVE4 849 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 NAGPAQ9UK23 515 aa5.75□□□□□ -1.49
USP28-210ENST00000542033 ZBTB42B2RXF5 422 aa5.74□□□□□ -1.49
USP28-210ENST00000542033 PDE3BQ13370 1112 aa5.74□□□□□ -1.49
USP28-210ENST00000542033 ECM1Q16610 540 aa5.74□□□□□ -1.49
USP28-210ENST00000542033 PERM1Q5SV97 790 aa5.74□□□□□ -1.49
USP28-210ENST00000542033 SND1Q7KZF4 910 aaKnown RBP eCLIP5.74□□□□□ -1.49
USP28-210ENST00000542033 TRIM11Q96F44 468 aa5.74□□□□□ -1.49
USP28-210ENST00000542033 DCAF5Q96JK2 942 aa5.74□□□□□ -1.49
USP28-210ENST00000542033 LPIN3Q9BQK8 851 aa5.74□□□□□ -1.49
USP28-210ENST00000542033 SPATA31C1P0DKV0 1188 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 NID1P14543 1247 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 MAPK1P28482 360 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 RAC1P63000 192 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 TRIM28Q13263 835 aaKnown RBP5.73□□□□□ -1.49
USP28-210ENST00000542033 TRAPPC3LQ5T215 181 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 C8orf86Q6ZUL3 223 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 HFE2Q6ZVN8 426 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 CACTIN-AS1Q8N1I8 211 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 PLD4Q96BZ4 506 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 SMG9Q9H0W8 520 aaKnown RBP5.73□□□□□ -1.49
USP28-210ENST00000542033 SUV39H2Q9H5I1 410 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 TMEM63CQ9P1W3 806 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 DCTN4Q9UJW0 460 aa5.73□□□□□ -1.49
USP28-210ENST00000542033 KIF4AO95239 1232 aa5.72□□□□□ -1.49
USP28-210ENST00000542033 NEFLP07196 543 aa5.72□□□□□ -1.49
USP28-210ENST00000542033 CES1P23141 567 aa5.72□□□□□ -1.49
USP28-210ENST00000542033 COL8A1P27658 744 aa5.72□□□□□ -1.49
USP28-210ENST00000542033 AFF1P51825 1210 aaKnown RBP5.72□□□□□ -1.49
USP28-210ENST00000542033 NCAPG2Q86XI2 1143 aa5.72□□□□□ -1.49
USP28-210ENST00000542033 WFDC8Q8IUA0 241 aa5.72□□□□□ -1.49
USP28-210ENST00000542033 GJD3Q8N144 294 aa5.72□□□□□ -1.49
USP28-210ENST00000542033 SNX29Q8TEQ0 813 aa5.72□□□□□ -1.49
USP28-210ENST00000542033 CITED4Q96RK1 184 aa5.72□□□□□ -1.49
USP28-210ENST00000542033 GGNBP2Q9H3C7 697 aa5.72□□□□□ -1.49
USP28-210ENST00000542033 A6NHS1 94 aa5.71□□□□□ -1.5
USP28-210ENST00000542033 FAM177BA6PVY3 158 aa5.71□□□□□ -1.5
USP28-210ENST00000542033 J3QW42 95 aa5.71□□□□□ -1.5
USP28-210ENST00000542033 PHACTR2O75167 634 aa5.71□□□□□ -1.5
USP28-210ENST00000542033 SMNDC1O75940 238 aaKnown RBP eCLIP5.71□□□□□ -1.5
USP28-210ENST00000542033 IGHA1P01876 353 aa5.71□□□□□ -1.5
USP28-210ENST00000542033 MSL1Q68DK7 614 aa5.71□□□□□ -1.5
USP28-210ENST00000542033 ZSCAN29Q8IWY8 852 aaPredicted RBP5.71□□□□□ -1.5
USP28-210ENST00000542033 NACC1Q96RE7 527 aa5.71□□□□□ -1.5
USP28-210ENST00000542033 APBA3O96018 575 aa5.7□□□□□ -1.5
USP28-210ENST00000542033 COL9A3Q14050 684 aaPredicted RBP5.7□□□□□ -1.5
USP28-210ENST00000542033 DTWD1Q8N5C7 304 aa5.7□□□□□ -1.5
USP28-210ENST00000542033 DCAF11Q8TEB1 546 aa5.7□□□□□ -1.5
USP28-210ENST00000542033 DMRTB1Q96MA1 342 aa5.7□□□□□ -1.5
USP28-210ENST00000542033 RBCK1Q9BYM8 510 aa5.7□□□□□ -1.5
USP28-210ENST00000542033 MUC3BQ9H195 1237 aa5.7□□□□□ -1.5
USP28-210ENST00000542033 A0A0A0MRY4 1105 aa5.69□□□□□ -1.5
USP28-210ENST00000542033 TNFRSF21O75509 655 aa5.69□□□□□ -1.5
USP28-210ENST00000542033 CYP2E1P05181 493 aaPredicted RBP5.69□□□□□ -1.5
USP28-210ENST00000542033 EDN3P14138 238 aa5.69□□□□□ -1.5
USP28-210ENST00000542033 TRIM26Q12899 539 aaPredicted RBP5.69□□□□□ -1.5
USP28-210ENST00000542033 GRIK5Q16478 980 aa5.69□□□□□ -1.5
USP28-210ENST00000542033 CCDC27Q2M243 656 aa5.69□□□□□ -1.5
USP28-210ENST00000542033 GDF6Q6KF10 455 aaPredicted RBP5.69□□□□□ -1.5
USP28-210ENST00000542033 DMRTC2Q8IXT2 367 aaPredicted RBP5.69□□□□□ -1.5
USP28-210ENST00000542033 C1orf127Q8N9H9 656 aa5.69□□□□□ -1.5
USP28-210ENST00000542033 CNTN3Q9P232 1028 aa5.69□□□□□ -1.5
USP28-210ENST00000542033 KANSL3Q9P2N6 904 aa5.69□□□□□ -1.5
USP28-210ENST00000542033 KRBA1A5PL33 1030 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 ELNP15502 786 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 PLA2G4EQ3MJ16 856 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 COL13A1Q5TAT6 717 aaPredicted RBP5.68□□□□□ -1.5
USP28-210ENST00000542033 TMCO4Q5TGY1 634 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 CEP135Q66GS9 1140 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 TMC7Q7Z402 723 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 CEP120Q8N960 986 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 FAM129BQ96TA1 746 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 PBX4Q9BYU1 374 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 SRA1Q9HD15 236 aaKnown RBP5.68□□□□□ -1.5
USP28-210ENST00000542033 SALL4Q9UJQ4 1053 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 AMOTL2Q9Y2J4 779 aa5.68□□□□□ -1.5
USP28-210ENST00000542033 PTPRAP18433 802 aa5.67□□□□□ -1.5
USP28-210ENST00000542033 GPAT2Q6NUI2 795 aa5.67□□□□□ -1.5
USP28-210ENST00000542033 MAP4K3Q8IVH8 894 aa5.67□□□□□ -1.5
USP28-210ENST00000542033 FMR1NBQ8N0W7 255 aaPredicted RBP5.67□□□□□ -1.5
USP28-210ENST00000542033 IL22RA1Q8N6P7 574 aa5.67□□□□□ -1.5
USP28-210ENST00000542033 ASB16Q96NS5 453 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms