RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 SLC6A14Q9UN76 642 aa8□□□□□ -1.13
PRKDC-210ENST00000541488 RTCBQ9Y3I0 505 aaKnown RBP8□□□□□ -1.13
PRKDC-210ENST00000541488 ATP2B4P23634 1241 aa7.99□□□□□ -1.13
PRKDC-210ENST00000541488 AFF1P51825 1210 aaKnown RBP7.99□□□□□ -1.13
PRKDC-210ENST00000541488 LCE4AQ5TA78 99 aa7.99□□□□□ -1.13
PRKDC-210ENST00000541488 ILDR2Q71H61 639 aa7.99□□□□□ -1.13
PRKDC-210ENST00000541488 SLC51AQ86UW1 340 aa7.99□□□□□ -1.13
PRKDC-210ENST00000541488 ETFBKMTQ8IXQ9 262 aa7.99□□□□□ -1.13
PRKDC-210ENST00000541488 CLP1Q92989 425 aaKnown RBP7.99□□□□□ -1.13
PRKDC-210ENST00000541488 ZFATQ9P243 1243 aa7.99□□□□□ -1.13
PRKDC-210ENST00000541488 RARAP10276 462 aa7.98□□□□□ -1.13
PRKDC-210ENST00000541488 CPB1P15086 417 aa7.98□□□□□ -1.13
PRKDC-210ENST00000541488 ARID3AQ99856 593 aa7.98□□□□□ -1.13
PRKDC-210ENST00000541488 SEPT3Q9UH03 358 aa7.98□□□□□ -1.13
PRKDC-210ENST00000541488 HFE2Q6ZVN8 426 aa7.97□□□□□ -1.13
PRKDC-210ENST00000541488 NAGPAQ9UK23 515 aa7.97□□□□□ -1.13
PRKDC-210ENST00000541488 SUPT5HO00267 1087 aaKnown RBP7.96□□□□□ -1.14
PRKDC-210ENST00000541488 TNFRSF10BO14763 440 aa7.96□□□□□ -1.14
PRKDC-210ENST00000541488 ADAMTS4O75173 837 aa7.96□□□□□ -1.14
PRKDC-210ENST00000541488 XYLBO75191 536 aa7.96□□□□□ -1.14
PRKDC-210ENST00000541488 BRD2P25440 801 aaKnown RBP7.96□□□□□ -1.14
PRKDC-210ENST00000541488 PSAPL1Q6NUJ1 521 aa7.96□□□□□ -1.14
PRKDC-210ENST00000541488 DHX32Q7L7V1 743 aaKnown RBP7.96□□□□□ -1.14
PRKDC-210ENST00000541488 FAM35AQ86V20 835 aa7.96□□□□□ -1.14
PRKDC-210ENST00000541488 KRTAP4-5Q9BYR2 181 aa7.95□□□□□ -1.14
PRKDC-210ENST00000541488 ZBTB42B2RXF5 422 aa7.94□□□□□ -1.14
PRKDC-210ENST00000541488 PTCD1O75127 700 aaKnown RBP7.94□□□□□ -1.14
PRKDC-210ENST00000541488 FBXO11Q86XK2 927 aa7.94□□□□□ -1.14
PRKDC-210ENST00000541488 KCNMB2Q9Y691 235 aa7.94□□□□□ -1.14
PRKDC-210ENST00000541488 ZBTB39O15060 712 aa7.93□□□□□ -1.14
PRKDC-210ENST00000541488 TGFB1P01137 390 aa7.93□□□□□ -1.14
PRKDC-210ENST00000541488 PLAURQ03405 335 aa7.93□□□□□ -1.14
PRKDC-210ENST00000541488 TRIP4Q15650 581 aaPredicted RBP7.93□□□□□ -1.14
PRKDC-210ENST00000541488 GPR152Q8TDT2 470 aa7.93□□□□□ -1.14
PRKDC-210ENST00000541488 J3QW42 95 aa7.92□□□□□ -1.14
PRKDC-210ENST00000541488 RGS9O75916 674 aaPredicted RBP7.92□□□□□ -1.14
PRKDC-210ENST00000541488 ZAP70P43403 619 aa7.92□□□□□ -1.14
PRKDC-210ENST00000541488 ATCAYQ86WG3 371 aa7.92□□□□□ -1.14
PRKDC-210ENST00000541488 DZIP1LQ8IYY4 767 aaKnown RBP7.92□□□□□ -1.14
PRKDC-210ENST00000541488 DTWD1Q8N5C7 304 aa7.92□□□□□ -1.14
PRKDC-210ENST00000541488 COL26A1Q96A83 441 aa7.92□□□□□ -1.14
PRKDC-210ENST00000541488 NSUN5Q96P11 429 aaKnown RBP7.92□□□□□ -1.14
PRKDC-210ENST00000541488 EFCC1Q9HA90 598 aa7.92□□□□□ -1.14
PRKDC-210ENST00000541488 TMEM88BA6NKF7 163 aa7.91□□□□□ -1.14
PRKDC-210ENST00000541488 MMP20O60882 483 aa7.91□□□□□ -1.14
PRKDC-210ENST00000541488 EIF2AK2P19525 551 aaKnown RBP7.91□□□□□ -1.14
PRKDC-210ENST00000541488 PERM1Q5SV97 790 aa7.91□□□□□ -1.14
PRKDC-210ENST00000541488 ELMSAN1Q6PJG2 1045 aa7.91□□□□□ -1.14
PRKDC-210ENST00000541488 STIM2Q9P246 746 aa7.91□□□□□ -1.14
PRKDC-210ENST00000541488 UBAP1LF5GYI3 381 aa7.9□□□□□ -1.14
PRKDC-210ENST00000541488 MTMR3Q13615 1198 aa7.9□□□□□ -1.14
PRKDC-210ENST00000541488 MSL1Q68DK7 614 aa7.9□□□□□ -1.14
PRKDC-210ENST00000541488 IGF2-ASQ6U949 168 aa7.9□□□□□ -1.14
PRKDC-210ENST00000541488 LPIN3Q9BQK8 851 aa7.9□□□□□ -1.14
PRKDC-210ENST00000541488 KRTAP17-1Q9BYP8 105 aa7.9□□□□□ -1.14
PRKDC-210ENST00000541488 MAP3K6O95382 1288 aa7.89□□□□□ -1.15
PRKDC-210ENST00000541488 SPINK2P20155 84 aa7.89□□□□□ -1.15
PRKDC-210ENST00000541488 TRPM4Q8TD43 1214 aa7.89□□□□□ -1.15
PRKDC-210ENST00000541488 PIK3R5Q8WYR1 880 aa7.89□□□□□ -1.15
PRKDC-210ENST00000541488 SMG9Q9H0W8 520 aaKnown RBP7.89□□□□□ -1.15
PRKDC-210ENST00000541488 TLR7Q9NYK1 1049 aaKnown RBP7.89□□□□□ -1.15
PRKDC-210ENST00000541488 PPP1R15AO75807 674 aaPredicted RBP7.88□□□□□ -1.15
PRKDC-210ENST00000541488 EGFRP00533 1210 aa7.88□□□□□ -1.15
PRKDC-210ENST00000541488 PSAPP07602 524 aa7.88□□□□□ -1.15
PRKDC-210ENST00000541488 GPLD1P80108 840 aa7.88□□□□□ -1.15
PRKDC-210ENST00000541488 OGFOD2Q6N063 350 aa7.88□□□□□ -1.15
PRKDC-210ENST00000541488 IGLV1-40P01703 118 aa7.87□□□□□ -1.15
PRKDC-210ENST00000541488 PCSK7Q16549 785 aa7.87□□□□□ -1.15
PRKDC-210ENST00000541488 NLRP13Q86W25 1043 aa7.87□□□□□ -1.15
PRKDC-210ENST00000541488 ABTB2Q8N961 1025 aa7.87□□□□□ -1.15
PRKDC-210ENST00000541488 GTF3C2Q8WUA4 911 aaPredicted RBP7.87□□□□□ -1.15
PRKDC-210ENST00000541488 AKTIPQ9H8T0 292 aa7.87□□□□□ -1.15
PRKDC-210ENST00000541488 ADGRE2Q9UHX3 823 aa7.87□□□□□ -1.15
PRKDC-210ENST00000541488 LOC102724428A0A0B4J2F2 783 aa7.86□□□□□ -1.15
PRKDC-210ENST00000541488 ALX3O95076 343 aa7.86□□□□□ -1.15
PRKDC-210ENST00000541488 SSFA2P28290 1259 aa7.86□□□□□ -1.15
PRKDC-210ENST00000541488 ARID4AP29374 1257 aaPredicted RBP7.86□□□□□ -1.15
PRKDC-210ENST00000541488 NRLP54845 237 aa7.86□□□□□ -1.15
PRKDC-210ENST00000541488 SIK1P57059 783 aa7.86□□□□□ -1.15
PRKDC-210ENST00000541488 GDF6Q6KF10 455 aaPredicted RBP7.86□□□□□ -1.15
PRKDC-210ENST00000541488 NUDT16Q96DE0 195 aaKnown RBP7.86□□□□□ -1.15
PRKDC-210ENST00000541488 ANO2Q9NQ90 1003 aa7.86□□□□□ -1.15
PRKDC-210ENST00000541488 A6NHS1 94 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 GSC2O15499 205 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 GHRHP01286 108 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 C8AP07357 584 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 MPSTP25325 297 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 DNM1Q05193 864 aaKnown RBP7.85□□□□□ -1.15
PRKDC-210ENST00000541488 GRIK5Q16478 980 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 HELQQ8TDG4 1101 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 EDEM1Q92611 657 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 PLD4Q96BZ4 506 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 C11orf16Q9NQ32 467 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 FAM13BQ9NYF5 915 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 TIMELESSQ9UNS1 1208 aa7.85□□□□□ -1.15
PRKDC-210ENST00000541488 DEAF1O75398 565 aaPredicted RBP7.84□□□□□ -1.15
PRKDC-210ENST00000541488 ABL1P00519 1130 aa7.84□□□□□ -1.15
PRKDC-210ENST00000541488 COL13A1Q5TAT6 717 aaPredicted RBP7.84□□□□□ -1.15
PRKDC-210ENST00000541488 RAXQ9Y2V3 346 aa7.84□□□□□ -1.15
PRKDC-210ENST00000541488 CYP2E1P05181 493 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms