RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 ATP5JP18859 108 aa20.52■□□□□ 0.88
SPIDR-227ENST00000541342 RASEFQ8IZ41 740 aa20.52■□□□□ 0.88
SPIDR-227ENST00000541342 SNX14Q9Y5W7 946 aa20.52■□□□□ 0.88
SPIDR-227ENST00000541342 ZNF34Q8IZ26 560 aa20.52■□□□□ 0.87
SPIDR-227ENST00000541342 EDC3Q96F86 508 aaKnown RBP20.52■□□□□ 0.87
SPIDR-227ENST00000541342 ZNF831Q5JPB2 1677 aa20.51■□□□□ 0.87
SPIDR-227ENST00000541342 CIAO1O76071 339 aa20.51■□□□□ 0.87
SPIDR-227ENST00000541342 CCDC39Q9UFE4 941 aa20.51■□□□□ 0.87
SPIDR-227ENST00000541342 WDR33Q9C0J8 1336 aaKnown RBP20.51■□□□□ 0.87
SPIDR-227ENST00000541342 MCM5P33992 734 aa20.51■□□□□ 0.87
SPIDR-227ENST00000541342 CCDC57Q2TAC2 916 aa20.51■□□□□ 0.87
SPIDR-227ENST00000541342 SMARCC1Q92922 1105 aaPredicted RBP20.5■□□□□ 0.87
SPIDR-227ENST00000541342 NDUFB9Q9Y6M9 179 aa20.5■□□□□ 0.87
SPIDR-227ENST00000541342 ZNF609O15014 1411 aa20.5■□□□□ 0.87
SPIDR-227ENST00000541342 TMEM87AQ8NBN3 555 aa20.5■□□□□ 0.87
SPIDR-227ENST00000541342 TIMM10P62072 90 aa20.5■□□□□ 0.87
SPIDR-227ENST00000541342 FAM227BQ96M60 508 aa20.5■□□□□ 0.87
SPIDR-227ENST00000541342 GPR108Q9NPR9 543 aa20.5■□□□□ 0.87
SPIDR-227ENST00000541342 TRMT112Q9UI30 125 aaKnown RBP20.5■□□□□ 0.87
SPIDR-227ENST00000541342 HSPA1LP34931 641 aa20.49■□□□□ 0.87
SPIDR-227ENST00000541342 GLIPR1L2Q4G1C9 344 aa20.49■□□□□ 0.87
SPIDR-227ENST00000541342 RUFY3Q7L099 469 aa20.49■□□□□ 0.87
SPIDR-227ENST00000541342 TTLL11Q8NHH1 800 aa20.49■□□□□ 0.87
SPIDR-227ENST00000541342 LARP6Q9BRS8 491 aaKnown RBP20.49■□□□□ 0.87
SPIDR-227ENST00000541342 CAMTA2O94983 1202 aa20.48■□□□□ 0.87
SPIDR-227ENST00000541342 PDCL3Q9H2J4 239 aa20.48■□□□□ 0.87
SPIDR-227ENST00000541342 IRS4O14654 1257 aaPredicted RBP20.48■□□□□ 0.87
SPIDR-227ENST00000541342 NMIQ13287 307 aaPredicted RBP20.48■□□□□ 0.87
SPIDR-227ENST00000541342 BTAF1O14981 1849 aa20.48■□□□□ 0.87
SPIDR-227ENST00000541342 AK2P54819 239 aa20.48■□□□□ 0.87
SPIDR-227ENST00000541342 PTH1RQ03431 593 aa20.48■□□□□ 0.87
SPIDR-227ENST00000541342 RUFY2Q8WXA3 655 aa20.48■□□□□ 0.87
SPIDR-227ENST00000541342 NEUROD6Q96NK8 337 aa20.48■□□□□ 0.87
SPIDR-227ENST00000541342 FSD1Q9BTV5 496 aa20.48■□□□□ 0.87
SPIDR-227ENST00000541342 GREM2Q9H772 168 aa20.48■□□□□ 0.87
SPIDR-227ENST00000541342 CNPY2Q9Y2B0 182 aa20.48■□□□□ 0.87
SPIDR-227ENST00000541342 CTSWP56202 376 aa20.47■□□□□ 0.87
SPIDR-227ENST00000541342 KCNQ4P56696 695 aa20.47■□□□□ 0.87
SPIDR-227ENST00000541342 LINC00116Q8NCU8 138 aa20.47■□□□□ 0.87
SPIDR-227ENST00000541342 FAM182BQ5T319 152 aa20.47■□□□□ 0.87
SPIDR-227ENST00000541342 SYAP1Q96A49 352 aaPredicted RBP20.47■□□□□ 0.87
SPIDR-227ENST00000541342 IFIT5Q13325 482 aaKnown RBP20.47■□□□□ 0.87
SPIDR-227ENST00000541342 BCORQ6W2J9 1755 aa20.46■□□□□ 0.87
SPIDR-227ENST00000541342 A0A0D9SFI3 127 aa20.46■□□□□ 0.87
SPIDR-227ENST00000541342 RBM10P98175 930 aaKnown RBP20.46■□□□□ 0.87
SPIDR-227ENST00000541342 HAUS7Q99871 368 aa20.46■□□□□ 0.87
SPIDR-227ENST00000541342 NHSQ6T4R5 1651 aa20.46■□□□□ 0.87
SPIDR-227ENST00000541342 SUSD4Q5VX71 490 aa20.46■□□□□ 0.87
SPIDR-227ENST00000541342 A0A1B0GUL7 405 aa20.45■□□□□ 0.86
SPIDR-227ENST00000541342 LARGE1O95461 756 aa20.45■□□□□ 0.86
SPIDR-227ENST00000541342 CPA1P15085 419 aa20.45■□□□□ 0.86
SPIDR-227ENST00000541342 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.45■□□□□ 0.86
SPIDR-227ENST00000541342 HIP1O00291 1037 aa20.45■□□□□ 0.86
SPIDR-227ENST00000541342 ITGA6P23229 1130 aa20.45■□□□□ 0.86
SPIDR-227ENST00000541342 DNAJC2Q99543 621 aaKnown RBP20.45■□□□□ 0.86
SPIDR-227ENST00000541342 ZSCAN22P10073 491 aaPredicted RBP20.45■□□□□ 0.86
SPIDR-227ENST00000541342 SYT1P21579 422 aa20.45■□□□□ 0.86
SPIDR-227ENST00000541342 SNRKQ9NRH2 765 aa20.45■□□□□ 0.86
SPIDR-227ENST00000541342 FBXO3Q9UK99 471 aa20.45■□□□□ 0.86
SPIDR-227ENST00000541342 MEX3CQ5U5Q3 659 aaKnown RBP20.44■□□□□ 0.86
SPIDR-227ENST00000541342 RIC1Q4ADV7 1423 aa20.44■□□□□ 0.86
SPIDR-227ENST00000541342 UQCRHLA0A096LP55 91 aa20.44■□□□□ 0.86
SPIDR-227ENST00000541342 UQCRHP07919 91 aa20.44■□□□□ 0.86
SPIDR-227ENST00000541342 CEP126Q9P2H0 1117 aa20.44■□□□□ 0.86
SPIDR-227ENST00000541342 DDX60Q8IY21 1712 aaKnown RBP20.44■□□□□ 0.86
SPIDR-227ENST00000541342 PDE8AO60658 829 aa20.43■□□□□ 0.86
SPIDR-227ENST00000541342 DTNBO60941 627 aa20.43■□□□□ 0.86
SPIDR-227ENST00000541342 CHGBP05060 677 aa20.43■□□□□ 0.86
SPIDR-227ENST00000541342 EP400Q96L91 3159 aa20.43■□□□□ 0.86
SPIDR-227ENST00000541342 PHF14O94880 888 aa20.43■□□□□ 0.86
SPIDR-227ENST00000541342 TAF7LQ5H9L4 462 aa20.43■□□□□ 0.86
SPIDR-227ENST00000541342 GJD4Q96KN9 370 aaPredicted RBP20.43■□□□□ 0.86
SPIDR-227ENST00000541342 MED23Q9ULK4 1368 aa20.43■□□□□ 0.86
SPIDR-227ENST00000541342 AFF2P51816 1311 aa20.43■□□□□ 0.86
SPIDR-227ENST00000541342 CCDC171Q6TFL3 1326 aa20.43■□□□□ 0.86
SPIDR-227ENST00000541342 CSPP1Q1MSJ5 1256 aa20.43■□□□□ 0.86
SPIDR-227ENST00000541342 STX6O43752 255 aa20.42■□□□□ 0.86
SPIDR-227ENST00000541342 LIMCH1Q9UPQ0 1083 aa20.42■□□□□ 0.86
SPIDR-227ENST00000541342 RIPOR2Q9Y4F9 1068 aa20.42■□□□□ 0.86
SPIDR-227ENST00000541342 FAM177BA6PVY3 158 aa20.42■□□□□ 0.86
SPIDR-227ENST00000541342 DDX46Q7L014 1031 aaKnown RBP20.42■□□□□ 0.86
SPIDR-227ENST00000541342 SBF2Q86WG5 1849 aa20.42■□□□□ 0.86
SPIDR-227ENST00000541342 CCDC183Q5T5S1 534 aa20.42■□□□□ 0.86
SPIDR-227ENST00000541342 ZNF589Q86UQ0 364 aaPredicted RBP20.41■□□□□ 0.86
SPIDR-227ENST00000541342 ADORA1P30542 326 aa20.41■□□□□ 0.86
SPIDR-227ENST00000541342 MPNDQ8N594 471 aa20.41■□□□□ 0.86
SPIDR-227ENST00000541342 USP25Q9UHP3 1055 aa20.41■□□□□ 0.86
SPIDR-227ENST00000541342 ANKRD18BA2A2Z9 1011 aa20.4■□□□□ 0.86
SPIDR-227ENST00000541342 F13A1P00488 732 aa20.4■□□□□ 0.86
SPIDR-227ENST00000541342 HCLS1P14317 486 aaPredicted RBP20.4■□□□□ 0.86
SPIDR-227ENST00000541342 ADCK5Q3MIX3 580 aa20.4■□□□□ 0.86
SPIDR-227ENST00000541342 CASTP20810 708 aaKnown RBP20.4■□□□□ 0.86
SPIDR-227ENST00000541342 ST3GAL1Q11201 340 aa20.4■□□□□ 0.86
SPIDR-227ENST00000541342 RFX7Q2KHR2 1363 aa20.4■□□□□ 0.86
SPIDR-227ENST00000541342 LRP5O75197 1615 aa20.4■□□□□ 0.86
SPIDR-227ENST00000541342 SH3TC1Q8TE82 1336 aa20.4■□□□□ 0.86
SPIDR-227ENST00000541342 LAMB2P55268 1798 aa20.4■□□□□ 0.86
SPIDR-227ENST00000541342 NECTIN1Q15223 517 aa20.4■□□□□ 0.86
SPIDR-227ENST00000541342 LDHAL6AQ6ZMR3 332 aa20.4■□□□□ 0.86
SPIDR-227ENST00000541342 SMIM5Q71RC9 77 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms