RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 NSUN5Q96P11 429 aaKnown RBP11.36□□□□□ -0.59
YBX3-210ENST00000540975 LPIN3Q9BQK8 851 aa11.36□□□□□ -0.59
YBX3-210ENST00000540975 JPH1Q9HDC5 661 aaPredicted RBP11.36□□□□□ -0.59
YBX3-210ENST00000540975 FRRS1LQ9P0K9 344 aa11.36□□□□□ -0.59
YBX3-210ENST00000540975 BRPF3Q9ULD4 1205 aa11.36□□□□□ -0.59
YBX3-210ENST00000540975 CYP2E1P05181 493 aaPredicted RBP11.35□□□□□ -0.59
YBX3-210ENST00000540975 EHHADHQ08426 723 aa11.35□□□□□ -0.59
YBX3-210ENST00000540975 ELMSAN1Q6PJG2 1045 aa11.35□□□□□ -0.59
YBX3-210ENST00000540975 GJD3Q8N144 294 aa11.35□□□□□ -0.59
YBX3-210ENST00000540975 PLVAPQ9BX97 442 aa11.35□□□□□ -0.59
YBX3-210ENST00000540975 AFF1P51825 1210 aaKnown RBP11.34□□□□□ -0.59
YBX3-210ENST00000540975 COL13A1Q5TAT6 717 aaPredicted RBP11.34□□□□□ -0.59
YBX3-210ENST00000540975 C1orf127Q8N9H9 656 aa11.34□□□□□ -0.59
YBX3-210ENST00000540975 TTC9Q92623 222 aa11.34□□□□□ -0.59
YBX3-210ENST00000540975 IVNS1ABPQ9Y6Y0 642 aa11.34□□□□□ -0.59
YBX3-210ENST00000540975 GDF11O95390 407 aa11.33□□□□□ -0.6
YBX3-210ENST00000540975 NID1P14543 1247 aa11.33□□□□□ -0.6
YBX3-210ENST00000540975 EIF2AK2P19525 551 aaKnown RBP11.33□□□□□ -0.6
YBX3-210ENST00000540975 COL8A1P27658 744 aa11.33□□□□□ -0.6
YBX3-210ENST00000540975 HYAL2Q12891 473 aa11.33□□□□□ -0.6
YBX3-210ENST00000540975 TMEM151AQ8N4L1 468 aa11.33□□□□□ -0.6
YBX3-210ENST00000540975 GHRHP01286 108 aa11.32□□□□□ -0.6
YBX3-210ENST00000540975 SMG9Q9H0W8 520 aaKnown RBP11.32□□□□□ -0.6
YBX3-210ENST00000540975 NDUFB5O43674 189 aa11.31□□□□□ -0.6
YBX3-210ENST00000540975 TNFRSF21O75509 655 aa11.31□□□□□ -0.6
YBX3-210ENST00000540975 KIF4AO95239 1232 aa11.31□□□□□ -0.6
YBX3-210ENST00000540975 GRIK5Q16478 980 aa11.31□□□□□ -0.6
YBX3-210ENST00000540975 CITED4Q96RK1 184 aa11.31□□□□□ -0.6
YBX3-210ENST00000540975 NOP53Q9NZM5 478 aaKnown RBP11.31□□□□□ -0.6
YBX3-210ENST00000540975 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.31□□□□□ -0.6
YBX3-210ENST00000540975 CES1P23141 567 aa11.3□□□□□ -0.6
YBX3-210ENST00000540975 PMEPA1Q969W9 287 aa11.3□□□□□ -0.6
YBX3-210ENST00000540975 PLD4Q96BZ4 506 aa11.3□□□□□ -0.6
YBX3-210ENST00000540975 DCAF5Q96JK2 942 aa11.3□□□□□ -0.6
YBX3-210ENST00000540975 RBSNQ9H1K0 784 aa11.3□□□□□ -0.6
YBX3-210ENST00000540975 CHRDQ9H2X0 955 aa11.3□□□□□ -0.6
YBX3-210ENST00000540975 BIN2Q9UBW5 565 aaPredicted RBP11.3□□□□□ -0.6
YBX3-210ENST00000540975 ILDR2Q71H61 639 aa11.29□□□□□ -0.6
YBX3-210ENST00000540975 CEP120Q8N960 986 aa11.29□□□□□ -0.6
YBX3-210ENST00000540975 SPACA7Q96KW9 195 aa11.29□□□□□ -0.6
YBX3-210ENST00000540975 SALL4Q9UJQ4 1053 aa11.29□□□□□ -0.6
YBX3-210ENST00000540975 PATL2C9JE40 543 aaKnown RBP11.28□□□□□ -0.6
YBX3-210ENST00000540975 TRAPPC3LQ5T215 181 aa11.28□□□□□ -0.6
YBX3-210ENST00000540975 NCAPG2Q86XI2 1143 aa11.28□□□□□ -0.6
YBX3-210ENST00000540975 KANSL3Q9P2N6 904 aa11.28□□□□□ -0.6
YBX3-210ENST00000540975 FOXD3Q9UJU5 478 aaPredicted RBP11.28□□□□□ -0.6
YBX3-210ENST00000540975 PHACTR2O75167 634 aa11.27□□□□□ -0.61
YBX3-210ENST00000540975 PDE3BQ13370 1112 aa11.27□□□□□ -0.61
YBX3-210ENST00000540975 ALYREFQ86V81 257 aaKnown RBP11.27□□□□□ -0.61
YBX3-210ENST00000540975 AEBP1Q8IUX7 1158 aa11.27□□□□□ -0.61
YBX3-210ENST00000540975 SPDYE3A6NKU9 549 aa11.26□□□□□ -0.61
YBX3-210ENST00000540975 DMRTC2Q8IXT2 367 aaPredicted RBP11.26□□□□□ -0.61
YBX3-210ENST00000540975 SNX29Q8TEQ0 813 aa11.26□□□□□ -0.61
YBX3-210ENST00000540975 FAM129BQ96TA1 746 aa11.26□□□□□ -0.61
YBX3-210ENST00000540975 EREGO14944 169 aa11.25□□□□□ -0.61
YBX3-210ENST00000540975 MSL1Q68DK7 614 aa11.25□□□□□ -0.61
YBX3-210ENST00000540975 ZFYVE28Q9HCC9 887 aa11.25□□□□□ -0.61
YBX3-210ENST00000540975 KRBA1A5PL33 1030 aa11.24□□□□□ -0.61
YBX3-210ENST00000540975 ATP11AP98196 1134 aa11.24□□□□□ -0.61
YBX3-210ENST00000540975 TRIM28Q13263 835 aaKnown RBP11.24□□□□□ -0.61
YBX3-210ENST00000540975 TMC1Q8TDI8 760 aa11.24□□□□□ -0.61
YBX3-210ENST00000540975 RBCK1Q9BYM8 510 aa11.24□□□□□ -0.61
YBX3-210ENST00000540975 RASSF4Q9H2L5 321 aa11.24□□□□□ -0.61
YBX3-210ENST00000540975 IGHA2P01877 340 aa11.23□□□□□ -0.61
YBX3-210ENST00000540975 CEP135Q66GS9 1140 aa11.23□□□□□ -0.61
YBX3-210ENST00000540975 GDF6Q6KF10 455 aaPredicted RBP11.23□□□□□ -0.61
YBX3-210ENST00000540975 KCTD17Q8N5Z5 321 aa11.23□□□□□ -0.61
YBX3-210ENST00000540975 PBX4Q9BYU1 374 aa11.23□□□□□ -0.61
YBX3-210ENST00000540975 BAG6P46379 1132 aa11.22□□□□□ -0.61
YBX3-210ENST00000540975 IL22RA1Q8N6P7 574 aa11.22□□□□□ -0.61
YBX3-210ENST00000540975 DCTN4Q9UJW0 460 aa11.22□□□□□ -0.61
YBX3-210ENST00000540975 TRIM33Q9UPN9 1127 aa11.22□□□□□ -0.61
YBX3-210ENST00000540975 A0A0A0MRY4 1105 aa11.21□□□□□ -0.61
YBX3-210ENST00000540975 FAM229AH3BQW9 127 aa11.21□□□□□ -0.61
YBX3-210ENST00000540975 SMNDC1O75940 238 aaKnown RBP eCLIP11.21□□□□□ -0.61
YBX3-210ENST00000540975 NEFLP07196 543 aa11.21□□□□□ -0.61
YBX3-210ENST00000540975 SPATA31C1P0DKV0 1188 aa11.21□□□□□ -0.61
YBX3-210ENST00000540975 PRRT3Q5FWE3 981 aa11.21□□□□□ -0.61
YBX3-210ENST00000540975 WFDC8Q8IUA0 241 aa11.21□□□□□ -0.61
YBX3-210ENST00000540975 NIF3L1Q9GZT8 377 aa11.21□□□□□ -0.61
YBX3-210ENST00000540975 DZANK1Q9NVP4 752 aa11.21□□□□□ -0.61
YBX3-210ENST00000540975 NFKBIEO00221 500 aa11.2□□□□□ -0.62
YBX3-210ENST00000540975 ACPPP15309 386 aa11.2□□□□□ -0.62
YBX3-210ENST00000540975 POP1Q99575 1024 aaKnown RBP11.2□□□□□ -0.62
YBX3-210ENST00000540975 AMOTL2Q9Y2J4 779 aa11.2□□□□□ -0.62
YBX3-210ENST00000540975 GPR182O15218 404 aa11.19□□□□□ -0.62
YBX3-210ENST00000540975 TRPA1O75762 1119 aa11.19□□□□□ -0.62
YBX3-210ENST00000540975 POLR3DP05423 398 aaPredicted RBP11.19□□□□□ -0.62
YBX3-210ENST00000540975 CACTIN-AS1Q8N1I8 211 aa11.19□□□□□ -0.62
YBX3-210ENST00000540975 DMRTB1Q96MA1 342 aa11.19□□□□□ -0.62
YBX3-210ENST00000540975 EDN3P14138 238 aa11.18□□□□□ -0.62
YBX3-210ENST00000540975 MAPK1P28482 360 aa11.18□□□□□ -0.62
YBX3-210ENST00000540975 ORC1Q13415 861 aa11.18□□□□□ -0.62
YBX3-210ENST00000540975 ADAMTSL4Q6UY14 1074 aa11.18□□□□□ -0.62
YBX3-210ENST00000540975 TMC7Q7Z402 723 aa11.18□□□□□ -0.62
YBX3-210ENST00000540975 ITGB2P05107 769 aa11.17□□□□□ -0.62
YBX3-210ENST00000540975 RAC1P63000 192 aa11.17□□□□□ -0.62
YBX3-210ENST00000540975 GRIK4Q16099 956 aa11.17□□□□□ -0.62
YBX3-210ENST00000540975 PLA2G4EQ3MJ16 856 aa11.17□□□□□ -0.62
YBX3-210ENST00000540975 USPL1Q5W0Q7 1092 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms