RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-223ENST00000540475 ZNF609O15014 1411 aa16.79■□□□□ 0.28
SEMA4D-223ENST00000540475 ZNF521Q96K83 1311 aa16.79■□□□□ 0.28
SEMA4D-223ENST00000540475 HIRAP54198 1017 aaPredicted RBP16.79■□□□□ 0.28
SEMA4D-223ENST00000540475 GCKRQ14397 625 aa16.79■□□□□ 0.28
SEMA4D-223ENST00000540475 HSPA1AP0DMV8 641 aaKnown RBP16.78■□□□□ 0.28
SEMA4D-223ENST00000540475 HSPA1BP0DMV9 641 aaKnown RBP16.78■□□□□ 0.28
SEMA4D-223ENST00000540475 RPS12P25398 132 aaKnown RBP16.78■□□□□ 0.28
SEMA4D-223ENST00000540475 ANKRD18AQ8IVF6 992 aa16.78■□□□□ 0.28
SEMA4D-223ENST00000540475 LINS1Q8NG48 757 aa16.78■□□□□ 0.28
SEMA4D-223ENST00000540475 DNAAF4Q8WXU2 420 aa16.78■□□□□ 0.28
SEMA4D-223ENST00000540475 DBNDD1Q9H9R9 158 aa16.78■□□□□ 0.28
SEMA4D-223ENST00000540475 CNOT7Q9UIV1 285 aaKnown RBP16.78■□□□□ 0.28
SEMA4D-223ENST00000540475 ZNF646O15015 1829 aaPredicted RBP16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 PSMD14O00487 310 aa16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 RIMBP2O15034 1052 aa16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 ECE2O60344 883 aa16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 CSF1RP07333 972 aa16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 VIL1P09327 827 aaKnown RBP16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 CST9Q5W186 159 aa16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 CDC5LQ99459 802 aaKnown RBP16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 BCL2L13Q9BXK5 485 aa16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 ZC3H12CQ9C0D7 883 aaKnown RBP16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 GREM2Q9H772 168 aa16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 BSDC1Q9NW68 430 aaPredicted RBP16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 GGA1Q9UJY5 639 aa16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 SALL2Q9Y467 1007 aaPredicted RBP16.77■□□□□ 0.28
SEMA4D-223ENST00000540475 XDHP47989 1333 aa16.76■□□□□ 0.27
SEMA4D-223ENST00000540475 VEGFBP49765 207 aa16.76■□□□□ 0.27
SEMA4D-223ENST00000540475 FKBP5Q13451 457 aaPredicted RBP16.76■□□□□ 0.27
SEMA4D-223ENST00000540475 FAM9BQ8IZU0 186 aa16.76■□□□□ 0.27
SEMA4D-223ENST00000540475 MYH16Q9H6N6 1097 aa16.76■□□□□ 0.27
SEMA4D-223ENST00000540475 KCNQ5Q9NR82 932 aa16.76■□□□□ 0.27
SEMA4D-223ENST00000540475 ANKIB1Q9P2G1 1089 aa16.76■□□□□ 0.27
SEMA4D-223ENST00000540475 THSD7BQ9C0I4 1608 aa16.76■□□□□ 0.27
SEMA4D-223ENST00000540475 H7C1D1 291 aa16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 UFL1O94874 794 aa16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 ATP2B4P23634 1241 aa16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 DOK7Q18PE1 504 aa16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 DEFB115Q30KQ5 88 aa16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 COL13A1Q5TAT6 717 aaPredicted RBP16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 UBE3BQ7Z3V4 1068 aa16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 TRPM4Q8TD43 1214 aa16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 GPR101Q96P66 508 aaPredicted RBP16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 CCDC85AQ96PX6 553 aaPredicted RBP16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 MINPP1Q9UNW1 487 aa16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 ZBTB12Q9Y330 459 aaPredicted RBP16.75■□□□□ 0.27
SEMA4D-223ENST00000540475 SHTN1A0MZ66 631 aa16.74■□□□□ 0.27
SEMA4D-223ENST00000540475 TRAF5O00463 557 aa16.74■□□□□ 0.27
SEMA4D-223ENST00000540475 FMR1Q06787 632 aaKnown RBP eCLIP16.74■□□□□ 0.27
SEMA4D-223ENST00000540475 MICALL2Q8IY33 904 aa16.74■□□□□ 0.27
SEMA4D-223ENST00000540475 BEND3Q5T5X7 828 aa16.73■□□□□ 0.27
SEMA4D-223ENST00000540475 PODNQ7Z5L7 613 aa16.73■□□□□ 0.27
SEMA4D-223ENST00000540475 A0A1B0GUL6 1792 aa16.73■□□□□ 0.27
SEMA4D-223ENST00000540475 CDC37L1Q7L3B6 337 aa16.72■□□□□ 0.27
SEMA4D-223ENST00000540475 GMLQ99445 158 aa16.72■□□□□ 0.27
SEMA4D-223ENST00000540475 TLL2Q9Y6L7 1015 aa16.72■□□□□ 0.27
SEMA4D-223ENST00000540475 MED23Q9ULK4 1368 aa16.72■□□□□ 0.27
SEMA4D-223ENST00000540475 WDR33Q9C0J8 1336 aaKnown RBP16.71■□□□□ 0.27
SEMA4D-223ENST00000540475 WTIPA6NIX2 430 aaPredicted RBP16.71■□□□□ 0.27
SEMA4D-223ENST00000540475 ZNF280AP59817 542 aaPredicted RBP16.71■□□□□ 0.27
SEMA4D-223ENST00000540475 SAMD7Q7Z3H4 446 aa16.71■□□□□ 0.27
SEMA4D-223ENST00000540475 AGBL3Q8NEM8 1001 aa16.71■□□□□ 0.27
SEMA4D-223ENST00000540475 HHIPL1Q96JK4 782 aa16.71■□□□□ 0.27
SEMA4D-223ENST00000540475 GLIS2Q9BZE0 524 aaPredicted RBP16.71■□□□□ 0.27
SEMA4D-223ENST00000540475 WBP1LQ9NX94 342 aa16.71■□□□□ 0.27
SEMA4D-223ENST00000540475 EGFRP00533 1210 aa16.7■□□□□ 0.26
SEMA4D-223ENST00000540475 ITGA6P23229 1130 aa16.7■□□□□ 0.26
SEMA4D-223ENST00000540475 CCT4P50991 539 aaKnown RBP16.7■□□□□ 0.26
SEMA4D-223ENST00000540475 FOXO4P98177 505 aa16.7■□□□□ 0.26
SEMA4D-223ENST00000540475 RSBN1LQ6PCB5 846 aaPredicted RBP16.7■□□□□ 0.26
SEMA4D-223ENST00000540475 SAPCD2Q86UD0 394 aa16.7■□□□□ 0.26
SEMA4D-223ENST00000540475 ABT1Q9ULW3 272 aaKnown RBP16.7■□□□□ 0.26
SEMA4D-223ENST00000540475 LEMD3Q9Y2U8 911 aa16.7■□□□□ 0.26
SEMA4D-223ENST00000540475 F6X3S4 739 aa16.69■□□□□ 0.26
SEMA4D-223ENST00000540475 IGHMBP2P38935 993 aaKnown RBP16.69■□□□□ 0.26
SEMA4D-223ENST00000540475 FOXN1O15353 648 aa16.68■□□□□ 0.26
SEMA4D-223ENST00000540475 FAM161AQ3B820 660 aa16.68■□□□□ 0.26
SEMA4D-223ENST00000540475 TBC1D10BQ4KMP7 808 aaPredicted RBP16.68■□□□□ 0.26
SEMA4D-223ENST00000540475 ANKRD2Q9GZV1 360 aa16.68■□□□□ 0.26
SEMA4D-223ENST00000540475 USP17L3A6NCW0 530 aa16.67■□□□□ 0.26
SEMA4D-223ENST00000540475 USP17L4A6NCW7 530 aa16.67■□□□□ 0.26
SEMA4D-223ENST00000540475 G3V3G9 751 aa16.67■□□□□ 0.26
SEMA4D-223ENST00000540475 ALDH1L1O75891 902 aa16.67■□□□□ 0.26
SEMA4D-223ENST00000540475 CELF2O95319 508 aaKnown RBP16.67■□□□□ 0.26
SEMA4D-223ENST00000540475 ECE1P42892 770 aa16.67■□□□□ 0.26
SEMA4D-223ENST00000540475 DCAF8Q5TAQ9 597 aa16.67■□□□□ 0.26
SEMA4D-223ENST00000540475 USP17L1Q7RTZ2 530 aa16.67■□□□□ 0.26
SEMA4D-223ENST00000540475 PRDM10Q9NQV6 1147 aa16.67■□□□□ 0.26
SEMA4D-223ENST00000540475 IRS2Q9Y4H2 1338 aa16.67■□□□□ 0.26
SEMA4D-223ENST00000540475 GRM8O00222 908 aa16.66■□□□□ 0.26
SEMA4D-223ENST00000540475 MMP14P50281 582 aa16.66■□□□□ 0.26
SEMA4D-223ENST00000540475 MAP2K1Q02750 393 aaPredicted RBP16.66■□□□□ 0.26
SEMA4D-223ENST00000540475 DACT2Q5SW24 774 aa16.66■□□□□ 0.26
SEMA4D-223ENST00000540475 C15orf52Q6ZUT6 534 aaKnown RBP16.66■□□□□ 0.26
SEMA4D-223ENST00000540475 USP48Q86UV5 1035 aa16.66■□□□□ 0.26
SEMA4D-223ENST00000540475 CAPNS2Q96L46 248 aa16.66■□□□□ 0.26
SEMA4D-223ENST00000540475 MPHOSPH8Q99549 860 aa16.66■□□□□ 0.26
SEMA4D-223ENST00000540475 COA1Q9GZY4 146 aa16.66■□□□□ 0.26
SEMA4D-223ENST00000540475 ZNF804BA4D1E1 1349 aa16.66■□□□□ 0.26
SEMA4D-223ENST00000540475 UTYO14607 1347 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms