RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TAF5LO75529 589 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 PCCAP05165 728 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-213ENST00000540338 AKAP17AQ02040 695 aaKnown RBP12.69□□□□□ -0.38
CLIP1-213ENST00000540338 MAP3K12Q12852 859 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 SART3Q15020 963 aaKnown RBP12.69□□□□□ -0.38
CLIP1-213ENST00000540338 NECTIN1Q15223 517 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 ME3Q16798 604 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 NBPF14Q5TI25 921 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 NBPF10Q6P3W6 841 aaKnown RBP12.69□□□□□ -0.38
CLIP1-213ENST00000540338 NBPF15Q8N660 670 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 ITGA6P23229 1130 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 ZSCAN30Q86W11 494 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 GAS2L3Q86XJ1 694 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 ZBTB38Q8NAP3 1195 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-213ENST00000540338 ATG3Q9NT62 314 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 LRP2BPQ9P2M1 347 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 FBXO3Q9UK99 471 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 MEGF6O75095 1541 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 NRDCO43847 1150 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 KINO60870 393 aaKnown RBP12.68□□□□□ -0.38
CLIP1-213ENST00000540338 CHAF1AQ13111 956 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-213ENST00000540338 MAP3K11Q16584 847 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 RABL6Q3YEC7 729 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-213ENST00000540338 KAZALD1Q96I82 304 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 CHAMP1Q96JM3 812 aa12.68□□□□□ -0.38
CLIP1-213ENST00000540338 VIRMAQ69YN4 1812 aaKnown RBP12.67□□□□□ -0.38
CLIP1-213ENST00000540338 CIAO1O76071 339 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 TPM4P67936 248 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 RRP12Q5JTH9 1297 aaKnown RBP12.67□□□□□ -0.38
CLIP1-213ENST00000540338 PIGBQ92521 554 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 SEC62Q99442 399 aaKnown RBP12.67□□□□□ -0.38
CLIP1-213ENST00000540338 KDM6AO15550 1401 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-213ENST00000540338 NCOA7Q8NI08 942 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 ME1P48163 572 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 STK38Q15208 465 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 SLC9C2Q5TAH2 1124 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 ZNF589Q86UQ0 364 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-213ENST00000540338 VSIG10Q8N0Z9 540 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 SDF4Q9BRK5 362 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 IL25Q9H293 177 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 ZSCAN16Q9H4T2 348 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-213ENST00000540338 TPCN1Q9ULQ1 816 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 MAP3K15Q6ZN16 1313 aa12.67□□□□□ -0.38
CLIP1-213ENST00000540338 PDE8AO60658 829 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 CYP2E1P05181 493 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-213ENST00000540338 MCM5P33992 734 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 SAFBQ15424 915 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLIP1-213ENST00000540338 CCDC152Q4G0S7 254 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 GIGYF2Q6Y7W6 1299 aaKnown RBP12.66□□□□□ -0.38
CLIP1-213ENST00000540338 UTP14AQ9BVJ6 771 aaKnown RBP12.66□□□□□ -0.38
CLIP1-213ENST00000540338 RGPD1P0DJD0 1748 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 CDKL5O76039 1030 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 BICDL1Q6ZP65 573 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 SMARCC1Q92922 1105 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-213ENST00000540338 PUS3Q9BZE2 481 aaKnown RBP12.66□□□□□ -0.38
CLIP1-213ENST00000540338 TMEM63CQ9P1W3 806 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 TDO2P48775 406 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-213ENST00000540338 GPT2Q8TD30 523 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 DSCC1Q9BVC3 393 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 NAPBQ9H115 298 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 LMTK3Q96Q04 1460 aa12.66□□□□□ -0.38
CLIP1-213ENST00000540338 SOS2Q07890 1332 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-213ENST00000540338 CHD2O14647 1828 aaKnown RBP12.66□□□□□ -0.38
CLIP1-213ENST00000540338 ZDHHC9Q9Y397 364 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 DTNBO60941 627 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 TTC14Q96N46 770 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 RBSNQ9H1K0 784 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 NWD1Q149M9 1564 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-213ENST00000540338 CAMK4Q16566 473 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 NGLY1Q96IV0 654 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 GOLGA8BA8MQT2 603 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 GUCY1B3Q02153 619 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 APOBRQ0VD83 1088 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 HELBQ8NG08 1087 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-213ENST00000540338 CCDC34Q96HJ3 373 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 CDC5LQ99459 802 aaKnown RBP12.65□□□□□ -0.38
CLIP1-213ENST00000540338 RAI14Q9P0K7 980 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 ABCF2Q9UG63 623 aa12.65□□□□□ -0.38
CLIP1-213ENST00000540338 NIP7Q9Y221 180 aaKnown RBP eCLIP12.65□□□□□ -0.38
CLIP1-213ENST00000540338 SLIT3O75094 1523 aa12.64□□□□□ -0.39
CLIP1-213ENST00000540338 CCDC69A6NI79 296 aa12.64□□□□□ -0.39
CLIP1-213ENST00000540338 GADD45BO75293 160 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-213ENST00000540338 APPBP2Q92624 585 aa12.64□□□□□ -0.39
CLIP1-213ENST00000540338 C8orf76Q96K31 380 aa12.64□□□□□ -0.39
CLIP1-213ENST00000540338 SH3TC1Q8TE82 1336 aa12.64□□□□□ -0.39
CLIP1-213ENST00000540338 MEX3CQ5U5Q3 659 aaKnown RBP12.64□□□□□ -0.39
CLIP1-213ENST00000540338 DDX19AQ9NUU7 478 aaKnown RBP12.64□□□□□ -0.39
CLIP1-213ENST00000540338 FOXO4P98177 505 aa12.64□□□□□ -0.39
CLIP1-213ENST00000540338 KIF1AQ12756 1690 aa12.64□□□□□ -0.39
CLIP1-213ENST00000540338 UVSSAQ2YD98 709 aa12.64□□□□□ -0.39
CLIP1-213ENST00000540338 MTMR6Q9Y217 621 aa12.64□□□□□ -0.39
CLIP1-213ENST00000540338 KDM4AO75164 1064 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 NKX1-1Q15270 411 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-213ENST00000540338 GIMAP6Q6P9H5 292 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 CHST3Q7LGC8 479 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 CTSWP56202 376 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 KLF18A0A0U1RQI7 1052 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 ZAP70P43403 619 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms