RNA–Protein interactions for RNA: ENST00000540183.1

SEMA4D-222, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 176 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-222	ENST00000540183	TBC1D16	Q8TBP0	767 aa		18.48	■□□□□ 0.55
SEMA4D-222	ENST00000540183	CCDC85A	Q96PX6	553 aa	Predicted RBP	18.48	■□□□□ 0.55
SEMA4D-222	ENST00000540183	ZIC5	Q96T25	663 aa		18.48	■□□□□ 0.55
SEMA4D-222	ENST00000540183	PRKRIP1	Q9H875	184 aa	Predicted RBP	18.48	■□□□□ 0.55
SEMA4D-222	ENST00000540183	RPS8	P62241	208 aa	Known RBP	18.47	■□□□□ 0.55
SEMA4D-222	ENST00000540183	GOLGA2	Q08379	1002 aa		18.47	■□□□□ 0.55
SEMA4D-222	ENST00000540183	C8orf58	Q8NAV2	365 aa		18.47	■□□□□ 0.55
SEMA4D-222	ENST00000540183	BEGAIN	Q9BUH8	593 aa		18.47	■□□□□ 0.55
SEMA4D-222	ENST00000540183	ZNF646	O15015	1829 aa	Predicted RBP	18.46	■□□□□ 0.55
SEMA4D-222	ENST00000540183	ADM5	C9JUS6	153 aa		18.46	■□□□□ 0.55
SEMA4D-222	ENST00000540183	MAP2K2	P36507	400 aa		18.46	■□□□□ 0.55
SEMA4D-222	ENST00000540183	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	18.46	■□□□□ 0.55
SEMA4D-222	ENST00000540183	DPF2	Q92785	391 aa		18.46	■□□□□ 0.55
SEMA4D-222	ENST00000540183	IFT57	Q9NWB7	429 aa		18.46	■□□□□ 0.55
SEMA4D-222	ENST00000540183	ASTN2	O75129	1339 aa	Predicted RBP	18.46	■□□□□ 0.55
SEMA4D-222	ENST00000540183	AKAP11	Q9UKA4	1901 aa		18.45	■□□□□ 0.54
SEMA4D-222	ENST00000540183	UFL1	O94874	794 aa		18.44	■□□□□ 0.54
SEMA4D-222	ENST00000540183	GNAI1	P63096	354 aa		18.44	■□□□□ 0.54
SEMA4D-222	ENST00000540183	EYA3	Q99504	573 aa		18.44	■□□□□ 0.54
SEMA4D-222	ENST00000540183	HUNK	P57058	714 aa		18.43	■□□□□ 0.54
SEMA4D-222	ENST00000540183	KRT26	Q7Z3Y9	468 aa		18.43	■□□□□ 0.54
SEMA4D-222	ENST00000540183	TSPYL6	Q8N831	410 aa		18.43	■□□□□ 0.54
SEMA4D-222	ENST00000540183	HHIPL1	Q96JK4	782 aa		18.43	■□□□□ 0.54
SEMA4D-222	ENST00000540183	WTIP	A6NIX2	430 aa	Predicted RBP	18.42	■□□□□ 0.54
SEMA4D-222	ENST00000540183	PCCA	P05165	728 aa	Predicted RBP	18.42	■□□□□ 0.54
SEMA4D-222	ENST00000540183	ZC3H12C	Q9C0D7	883 aa	Known RBP	18.42	■□□□□ 0.54
SEMA4D-222	ENST00000540183	PODXL2	Q9NZ53	605 aa		18.42	■□□□□ 0.54
SEMA4D-222	ENST00000540183	ANKIB1	Q9P2G1	1089 aa		18.42	■□□□□ 0.54
SEMA4D-222	ENST00000540183	CCDC85C	A6NKD9	419 aa		18.41	■□□□□ 0.54
SEMA4D-222	ENST00000540183	PDE8A	O60658	829 aa		18.41	■□□□□ 0.54
SEMA4D-222	ENST00000540183	VIL1	P09327	827 aa	Known RBP	18.41	■□□□□ 0.54
SEMA4D-222	ENST00000540183	RPS12	P25398	132 aa	Known RBP	18.41	■□□□□ 0.54
SEMA4D-222	ENST00000540183	BRPF1	P55201	1214 aa	Predicted RBP	18.41	■□□□□ 0.54
SEMA4D-222	ENST00000540183	KIF4B	Q2VIQ3	1234 aa		18.41	■□□□□ 0.54
SEMA4D-222	ENST00000540183	CCDC191	Q8NCU4	936 aa		18.41	■□□□□ 0.54
SEMA4D-222	ENST00000540183	METTL22	Q9BUU2	404 aa	Predicted RBP	18.41	■□□□□ 0.54
SEMA4D-222	ENST00000540183	CWC25	Q9NXE8	425 aa	Predicted RBP	18.41	■□□□□ 0.54
SEMA4D-222	ENST00000540183	GGA1	Q9UJY5	639 aa		18.41	■□□□□ 0.54
SEMA4D-222	ENST00000540183	CCDC152	Q4G0S7	254 aa		18.4	■□□□□ 0.54
SEMA4D-222	ENST00000540183	CCDC184	Q52MB2	194 aa		18.4	■□□□□ 0.54
SEMA4D-222	ENST00000540183	TSR2	Q969E8	191 aa	Known RBP	18.4	■□□□□ 0.54
SEMA4D-222	ENST00000540183	GGA3	Q9NZ52	723 aa		18.4	■□□□□ 0.54
SEMA4D-222	ENST00000540183	MAP3K2	Q9Y2U5	619 aa		18.4	■□□□□ 0.54
SEMA4D-222	ENST00000540183	FAM155A	B1AL88	458 aa	Predicted RBP	18.39	■□□□□ 0.53
SEMA4D-222	ENST00000540183	DCPS	Q96C86	337 aa	Known RBP	18.39	■□□□□ 0.53
SEMA4D-222	ENST00000540183	GBA2	Q9HCG7	927 aa	Predicted RBP	18.39	■□□□□ 0.53
SEMA4D-222	ENST00000540183		G3V3G9	751 aa		18.38	■□□□□ 0.53
SEMA4D-222	ENST00000540183	IGKV5-2	P06315	115 aa		18.38	■□□□□ 0.53
SEMA4D-222	ENST00000540183	FAM161A	Q3B820	660 aa		18.38	■□□□□ 0.53
SEMA4D-222	ENST00000540183	DCAF8	Q5TAQ9	597 aa		18.38	■□□□□ 0.53
SEMA4D-222	ENST00000540183	RGMB	Q6NW40	437 aa		18.38	■□□□□ 0.53
SEMA4D-222	ENST00000540183	MCOLN1	Q9GZU1	580 aa		18.38	■□□□□ 0.53
SEMA4D-222	ENST00000540183	SCAF8	Q9UPN6	1271 aa	Known RBP	18.38	■□□□□ 0.53
SEMA4D-222	ENST00000540183	CALD1	Q05682	793 aa	Known RBP	18.37	■□□□□ 0.53
SEMA4D-222	ENST00000540183	NOG	Q13253	232 aa		18.37	■□□□□ 0.53
SEMA4D-222	ENST00000540183	CCDC30	Q5VVM6	783 aa		18.37	■□□□□ 0.53
SEMA4D-222	ENST00000540183	ANKRD18A	Q8IVF6	992 aa		18.37	■□□□□ 0.53
SEMA4D-222	ENST00000540183		A0A1B0GUL6	1792 aa		18.36	■□□□□ 0.53
SEMA4D-222	ENST00000540183	PI4KAP2	A4QPH2	592 aa		18.36	■□□□□ 0.53
SEMA4D-222	ENST00000540183	CA12	O43570	354 aa		18.36	■□□□□ 0.53
SEMA4D-222	ENST00000540183	CACNA1F	O60840	1977 aa		18.36	■□□□□ 0.53
SEMA4D-222	ENST00000540183	XDH	P47989	1333 aa		18.36	■□□□□ 0.53
SEMA4D-222	ENST00000540183	RSBN1L	Q6PCB5	846 aa	Predicted RBP	18.36	■□□□□ 0.53
SEMA4D-222	ENST00000540183	G2E3	Q7L622	706 aa		18.36	■□□□□ 0.53
SEMA4D-222	ENST00000540183	PI4KAP1	Q8N8J0	262 aa		18.36	■□□□□ 0.53
SEMA4D-222	ENST00000540183	C2orf69	Q8N8R5	385 aa		18.36	■□□□□ 0.53
SEMA4D-222	ENST00000540183	CDCA5	Q96FF9	252 aa		18.36	■□□□□ 0.53
SEMA4D-222	ENST00000540183	DDX58	O95786	925 aa	Known RBP	18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	HSP90B1	P14625	803 aa	Known RBP	18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	ZNF157	P51786	506 aa	Predicted RBP	18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	CTSW	P56202	376 aa		18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	ZNF280A	P59817	542 aa	Predicted RBP	18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	KIF23	Q02241	960 aa	Predicted RBP	18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	SCARF1	Q14162	830 aa		18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	CWF19L2	Q2TBE0	894 aa	Known RBP	18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	ANGEL2	Q5VTE6	544 aa	Known RBP	18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	KSR2	Q6VAB6	950 aa		18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	GML	Q99445	158 aa		18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	MXD3	Q9BW11	206 aa		18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	GREM2	Q9H772	168 aa		18.35	■□□□□ 0.53
SEMA4D-222	ENST00000540183	ZNF609	O15014	1411 aa		18.34	■□□□□ 0.53
SEMA4D-222	ENST00000540183	DGKZ	Q13574	1117 aa		18.34	■□□□□ 0.53
SEMA4D-222	ENST00000540183	SULF1	Q8IWU6	871 aa		18.34	■□□□□ 0.53
SEMA4D-222	ENST00000540183	TTLL11	Q8NHH1	800 aa		18.34	■□□□□ 0.53
SEMA4D-222	ENST00000540183	PAPPA2	Q9BXP8	1791 aa		18.33	■□□□□ 0.53
SEMA4D-222	ENST00000540183	ATP2B4	P23634	1241 aa		18.33	■□□□□ 0.52
SEMA4D-222	ENST00000540183	AGBL3	Q8NEM8	1001 aa		18.33	■□□□□ 0.52
SEMA4D-222	ENST00000540183	MINPP1	Q9UNW1	487 aa		18.33	■□□□□ 0.52
SEMA4D-222	ENST00000540183	MOB2	Q70IA6	237 aa		18.32	■□□□□ 0.52
SEMA4D-222	ENST00000540183	MYOZ2	Q9NPC6	264 aa		18.32	■□□□□ 0.52
SEMA4D-222	ENST00000540183	USP17L3	A6NCW0	530 aa		18.31	■□□□□ 0.52
SEMA4D-222	ENST00000540183	USP17L4	A6NCW7	530 aa		18.31	■□□□□ 0.52
SEMA4D-222	ENST00000540183	NEURL1B	A8MQ27	555 aa		18.31	■□□□□ 0.52
SEMA4D-222	ENST00000540183	SLC10A3	P09131	477 aa		18.31	■□□□□ 0.52
SEMA4D-222	ENST00000540183	USP17L8	P0C7I0	530 aa		18.31	■□□□□ 0.52
SEMA4D-222	ENST00000540183	USP17L1	Q7RTZ2	530 aa		18.31	■□□□□ 0.52
SEMA4D-222	ENST00000540183	UBE3B	Q7Z3V4	1068 aa		18.31	■□□□□ 0.52
SEMA4D-222	ENST00000540183	TXNRD3	Q86VQ6	643 aa		18.31	■□□□□ 0.52
SEMA4D-222	ENST00000540183	CDC5L	Q99459	802 aa	Known RBP	18.31	■□□□□ 0.52
SEMA4D-222	ENST00000540183	MED23	Q9ULK4	1368 aa		18.3	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms