RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 LDHDQ86WU2 507 aa18.77■□□□□ 0.6
USP28-204ENST00000537642 EYA3Q99504 573 aa18.77■□□□□ 0.6
USP28-204ENST00000537642 SRCIN1Q9C0H9 1055 aa18.77■□□□□ 0.6
USP28-204ENST00000537642 BSDC1Q9NW68 430 aaPredicted RBP18.77■□□□□ 0.6
USP28-204ENST00000537642 GGA1Q9UJY5 639 aa18.77■□□□□ 0.6
USP28-204ENST00000537642 PTPRCP08575 1304 aa18.76■□□□□ 0.59
USP28-204ENST00000537642 GRM8O00222 908 aa18.76■□□□□ 0.59
USP28-204ENST00000537642 RAD17O75943 681 aa18.76■□□□□ 0.59
USP28-204ENST00000537642 ITGA6P23229 1130 aa18.76■□□□□ 0.59
USP28-204ENST00000537642 EPS15P42566 896 aa18.76■□□□□ 0.59
USP28-204ENST00000537642 HTRA3P83110 453 aa18.76■□□□□ 0.59
USP28-204ENST00000537642 FOXO4P98177 505 aa18.76■□□□□ 0.59
USP28-204ENST00000537642 DBNDD1Q9H9R9 158 aa18.76■□□□□ 0.59
USP28-204ENST00000537642 XDHP47989 1333 aa18.75■□□□□ 0.59
USP28-204ENST00000537642 LMOD1P29536 600 aaPredicted RBP18.75■□□□□ 0.59
USP28-204ENST00000537642 DOK7Q18PE1 504 aa18.75■□□□□ 0.59
USP28-204ENST00000537642 EPHA10Q5JZY3 1008 aa18.75■□□□□ 0.59
USP28-204ENST00000537642 PNMA8AQ86V59 439 aaPredicted RBP18.75■□□□□ 0.59
USP28-204ENST00000537642 MINPP1Q9UNW1 487 aa18.75■□□□□ 0.59
USP28-204ENST00000537642 SCN9AQ15858 1988 aa18.74■□□□□ 0.59
USP28-204ENST00000537642 CT47B1P0C2W7 299 aaPredicted RBP18.74■□□□□ 0.59
USP28-204ENST00000537642 IGHMBP2P38935 993 aaKnown RBP18.74■□□□□ 0.59
USP28-204ENST00000537642 GMPSP49915 693 aaPredicted RBP18.74■□□□□ 0.59
USP28-204ENST00000537642 TNIP1Q15025 636 aa18.74■□□□□ 0.59
USP28-204ENST00000537642 ZC3H12CQ9C0D7 883 aaKnown RBP18.74■□□□□ 0.59
USP28-204ENST00000537642 SMC4Q9NTJ3 1288 aa18.74■□□□□ 0.59
USP28-204ENST00000537642 C9orf78Q9NZ63 289 aaPredicted RBP18.74■□□□□ 0.59
USP28-204ENST00000537642 GPRC5DQ9NZD1 345 aa18.74■□□□□ 0.59
USP28-204ENST00000537642 WTIPA6NIX2 430 aaPredicted RBP18.73■□□□□ 0.59
USP28-204ENST00000537642 ECE2O60344 883 aa18.73■□□□□ 0.59
USP28-204ENST00000537642 ATP2B4P23634 1241 aa18.73■□□□□ 0.59
USP28-204ENST00000537642 DNAJC5GQ8N7S2 189 aa18.73■□□□□ 0.59
USP28-204ENST00000537642 KCNQ5Q9NR82 932 aa18.73■□□□□ 0.59
USP28-204ENST00000537642 CLEC11AQ9Y240 323 aa18.73■□□□□ 0.59
USP28-204ENST00000537642 ANKRD18BA2A2Z9 1011 aa18.72■□□□□ 0.59
USP28-204ENST00000537642 PSMD14O00487 310 aa18.72■□□□□ 0.59
USP28-204ENST00000537642 LMBR1LQ6UX01 489 aa18.72■□□□□ 0.59
USP28-204ENST00000537642 NBPF7P0C2Y1 421 aaPredicted RBP18.71■□□□□ 0.59
USP28-204ENST00000537642 KAZALD1Q96I82 304 aa18.71■□□□□ 0.59
USP28-204ENST00000537642 SUCLG2Q96I99 432 aa18.71■□□□□ 0.59
USP28-204ENST00000537642 MPHOSPH8Q99549 860 aa18.71■□□□□ 0.59
USP28-204ENST00000537642 CHMP3Q9Y3E7 222 aa18.71■□□□□ 0.59
USP28-204ENST00000537642 UTYO14607 1347 aa18.71■□□□□ 0.59
USP28-204ENST00000537642 ITGBL1O95965 494 aaPredicted RBP18.7■□□□□ 0.58
USP28-204ENST00000537642 CCT4P50991 539 aaKnown RBP18.7■□□□□ 0.58
USP28-204ENST00000537642 IFIT5Q13325 482 aaKnown RBP18.7■□□□□ 0.58
USP28-204ENST00000537642 USP50Q70EL3 339 aaPredicted RBP18.7■□□□□ 0.58
USP28-204ENST00000537642 ADARB2Q9NS39 739 aaKnown RBP18.7■□□□□ 0.58
USP28-204ENST00000537642 ZBTB12Q9Y330 459 aaPredicted RBP18.7■□□□□ 0.58
USP28-204ENST00000537642 PASKQ96RG2 1323 aa18.7■□□□□ 0.58
USP28-204ENST00000537642 A0A1B0GUL6 1792 aa18.69■□□□□ 0.58
USP28-204ENST00000537642 SHTN1A0MZ66 631 aa18.69■□□□□ 0.58
USP28-204ENST00000537642 HNRNPUQ00839 825 aaKnown RBP eCLIP18.69■□□□□ 0.58
USP28-204ENST00000537642 MAP1SQ66K74 1059 aaPredicted RBP18.69■□□□□ 0.58
USP28-204ENST00000537642 PSME4Q14997 1843 aa18.69■□□□□ 0.58
USP28-204ENST00000537642 MED23Q9ULK4 1368 aa18.68■□□□□ 0.58
USP28-204ENST00000537642 G3V3G9 751 aa18.68■□□□□ 0.58
USP28-204ENST00000537642 RARSP54136 660 aaKnown RBP18.68■□□□□ 0.58
USP28-204ENST00000537642 BRPF1P55201 1214 aaPredicted RBP18.68■□□□□ 0.58
USP28-204ENST00000537642 CHRNDQ07001 517 aa18.68■□□□□ 0.58
USP28-204ENST00000537642 DCAF8Q5TAQ9 597 aa18.68■□□□□ 0.58
USP28-204ENST00000537642 CNTROBQ8N137 903 aa18.68■□□□□ 0.58
USP28-204ENST00000537642 ANKRD2Q9GZV1 360 aa18.68■□□□□ 0.58
USP28-204ENST00000537642 CNOT7Q9UIV1 285 aaKnown RBP18.68■□□□□ 0.58
USP28-204ENST00000537642 NOB1Q9ULX3 412 aaKnown RBP18.68■□□□□ 0.58
USP28-204ENST00000537642 LEMD3Q9Y2U8 911 aa18.68■□□□□ 0.58
USP28-204ENST00000537642 CCDC57Q2TAC2 916 aa18.67■□□□□ 0.58
USP28-204ENST00000537642 DPF2Q92785 391 aa18.67■□□□□ 0.58
USP28-204ENST00000537642 ZNF594Q96JF6 807 aaPredicted RBP18.67■□□□□ 0.58
USP28-204ENST00000537642 VIL1P09327 827 aaKnown RBP18.66■□□□□ 0.58
USP28-204ENST00000537642 TXNRD3Q86VQ6 643 aa18.66■□□□□ 0.58
USP28-204ENST00000537642 MICALL2Q8IY33 904 aa18.66■□□□□ 0.58
USP28-204ENST00000537642 TRPM4Q8TD43 1214 aa18.66■□□□□ 0.58
USP28-204ENST00000537642 KLRG1Q96E93 195 aa18.66■□□□□ 0.58
USP28-204ENST00000537642 USP44Q9H0E7 712 aa18.66■□□□□ 0.58
USP28-204ENST00000537642 BICC1Q9H694 974 aaKnown RBP18.66■□□□□ 0.58
USP28-204ENST00000537642 ZNF804BA4D1E1 1349 aa18.66■□□□□ 0.58
USP28-204ENST00000537642 H7C1D1 291 aa18.65■□□□□ 0.58
USP28-204ENST00000537642 RPS12P25398 132 aaKnown RBP18.65■□□□□ 0.58
USP28-204ENST00000537642 KLRK1P26718 216 aa18.65■□□□□ 0.58
USP28-204ENST00000537642 HIRAP54198 1017 aaPredicted RBP18.65■□□□□ 0.58
USP28-204ENST00000537642 RABL6Q3YEC7 729 aaPredicted RBP18.65■□□□□ 0.58
USP28-204ENST00000537642 TAF7LQ5H9L4 462 aa18.64■□□□□ 0.57
USP28-204ENST00000537642 PODNQ7Z5L7 613 aa18.64■□□□□ 0.57
USP28-204ENST00000537642 ANKRD44Q8N8A2 993 aa18.64■□□□□ 0.57
USP28-204ENST00000537642 HELBQ8NG08 1087 aaPredicted RBP18.64■□□□□ 0.57
USP28-204ENST00000537642 CREBZFQ9NS37 354 aa18.64■□□□□ 0.57
USP28-204ENST00000537642 ZNF646O15015 1829 aaPredicted RBP18.64■□□□□ 0.57
USP28-204ENST00000537642 SNAP23O00161 211 aa18.63■□□□□ 0.57
USP28-204ENST00000537642 TAF5LO75529 589 aa18.63■□□□□ 0.57
USP28-204ENST00000537642 LDHAL6AQ6ZMR3 332 aa18.63■□□□□ 0.57
USP28-204ENST00000537642 API5Q9BZZ5 524 aaKnown RBP18.63■□□□□ 0.57
USP28-204ENST00000537642 PGAP2Q9UHJ9 254 aa18.63■□□□□ 0.57
USP28-204ENST00000537642 ZNF609O15014 1411 aa18.63■□□□□ 0.57
USP28-204ENST00000537642 KCNJ4P48050 445 aa18.62■□□□□ 0.57
USP28-204ENST00000537642 FMR1Q06787 632 aaKnown RBP eCLIP18.62■□□□□ 0.57
USP28-204ENST00000537642 RSBN1LQ6PCB5 846 aaPredicted RBP18.62■□□□□ 0.57
USP28-204ENST00000537642 SAMD7Q7Z3H4 446 aa18.62■□□□□ 0.57
USP28-204ENST00000537642 COA1Q9GZY4 146 aa18.62■□□□□ 0.57
USP28-204ENST00000537642 CNNM1Q9NRU3 951 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms