RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 DLK2Q6UY11 383 aa6.46□□□□□ -1.38
USH1C-210ENST00000534556 ANKRD44Q8N8A2 993 aa6.46□□□□□ -1.38
USH1C-210ENST00000534556 USP44Q9H0E7 712 aa6.46□□□□□ -1.38
USH1C-210ENST00000534556 DBNDD1Q9H9R9 158 aa6.46□□□□□ -1.38
USH1C-210ENST00000534556 PODXL2Q9NZ53 605 aa6.46□□□□□ -1.38
USH1C-210ENST00000534556 MINPP1Q9UNW1 487 aa6.46□□□□□ -1.38
USH1C-210ENST00000534556 NSFL1CQ9UNZ2 370 aaKnown RBP6.46□□□□□ -1.38
USH1C-210ENST00000534556 GJA3Q9Y6H8 435 aa6.46□□□□□ -1.38
USH1C-210ENST00000534556 UTYO14607 1347 aa6.46□□□□□ -1.38
USH1C-210ENST00000534556 C6orf229H3BNL8 230 aa6.45□□□□□ -1.38
USH1C-210ENST00000534556 GRM8O00222 908 aa6.45□□□□□ -1.38
USH1C-210ENST00000534556 BCAR3O75815 825 aa6.45□□□□□ -1.38
USH1C-210ENST00000534556 ITGBL1O95965 494 aaPredicted RBP6.45□□□□□ -1.38
USH1C-210ENST00000534556 ITGA6P23229 1130 aa6.45□□□□□ -1.38
USH1C-210ENST00000534556 HIRAP54198 1017 aaPredicted RBP6.45□□□□□ -1.38
USH1C-210ENST00000534556 ALDH1L2Q3SY69 923 aa6.45□□□□□ -1.38
USH1C-210ENST00000534556 DPY19L2Q6NUT2 758 aa6.45□□□□□ -1.38
USH1C-210ENST00000534556 LMBR1LQ6UX01 489 aa6.45□□□□□ -1.38
USH1C-210ENST00000534556 GPC2Q8N158 579 aa6.45□□□□□ -1.38
USH1C-210ENST00000534556 HELBQ8NG08 1087 aaPredicted RBP6.45□□□□□ -1.38
USH1C-210ENST00000534556 CHMP4AQ9BY43 222 aa6.45□□□□□ -1.38
USH1C-210ENST00000534556 PUS3Q9BZE2 481 aaKnown RBP6.45□□□□□ -1.38
USH1C-210ENST00000534556 ZNRF3Q9ULT6 936 aa6.45□□□□□ -1.38
USH1C-210ENST00000534556 NOB1Q9ULX3 412 aaKnown RBP6.45□□□□□ -1.38
USH1C-210ENST00000534556 ZBTB12Q9Y330 459 aaPredicted RBP6.45□□□□□ -1.38
USH1C-210ENST00000534556 PSMD14O00487 310 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 ECE2O60344 883 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 TAF5LO75529 589 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 ALDH1L1O75891 902 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 UFL1O94874 794 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 EPHX2P34913 555 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 GMPSP49915 693 aaPredicted RBP6.44□□□□□ -1.38
USH1C-210ENST00000534556 BRPF1P55201 1214 aaPredicted RBP6.44□□□□□ -1.38
USH1C-210ENST00000534556 HNRNPUQ00839 825 aaKnown RBP eCLIP6.44□□□□□ -1.38
USH1C-210ENST00000534556 WASHC4Q2M389 1173 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 GRIPAP1Q4V328 841 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 TMC4Q7Z404 712 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 ANKRD18AQ8IVF6 992 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 NIM1KQ8IY84 436 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 KLHDC4Q8TBB5 520 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 TRPM4Q8TD43 1214 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 JDP2Q8WYK2 163 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 MXD3Q9BW11 206 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 SRCIN1Q9C0H9 1055 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 VPS33BQ9H267 617 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 BICC1Q9H694 974 aaKnown RBP6.44□□□□□ -1.38
USH1C-210ENST00000534556 SMC4Q9NTJ3 1288 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 BSDC1Q9NW68 430 aaPredicted RBP6.44□□□□□ -1.38
USH1C-210ENST00000534556 GPRC5DQ9NZD1 345 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 AKAP11Q9UKA4 1901 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 PASKQ96RG2 1323 aa6.44□□□□□ -1.38
USH1C-210ENST00000534556 RFX5P48382 616 aaPredicted RBP6.43□□□□□ -1.38
USH1C-210ENST00000534556 CCT4P50991 539 aaKnown RBP6.43□□□□□ -1.38
USH1C-210ENST00000534556 EIF6P56537 245 aaKnown RBP6.43□□□□□ -1.38
USH1C-210ENST00000534556 CHRNDQ07001 517 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 FSTL1Q12841 308 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 RABL6Q3YEC7 729 aaPredicted RBP6.43□□□□□ -1.38
USH1C-210ENST00000534556 LRRC24Q50LG9 513 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 MAP1SQ66K74 1059 aaPredicted RBP6.43□□□□□ -1.38
USH1C-210ENST00000534556 CIAPIN1Q6FI81 312 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 CHADLQ6NUI6 762 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 SUPT20HQ8NEM7 779 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 GMLQ99445 158 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 HACL1Q9UJ83 578 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 GGA1Q9UJY5 639 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 ASTN2O75129 1339 aaPredicted RBP6.43□□□□□ -1.38
USH1C-210ENST00000534556 PTPRCP08575 1304 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 XDHP47989 1333 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 CDK5RAP2Q96SN8 1893 aa6.43□□□□□ -1.38
USH1C-210ENST00000534556 MYH2Q9UKX2 1941 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 TRAF5O00463 557 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 VIL1P09327 827 aaKnown RBP6.42□□□□□ -1.38
USH1C-210ENST00000534556 EAPPQ56P03 285 aaPredicted RBP6.42□□□□□ -1.38
USH1C-210ENST00000534556 SAMD7Q7Z3H4 446 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 LDHDQ86WU2 507 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 C16orf71Q8IYS4 520 aaPredicted RBP6.42□□□□□ -1.38
USH1C-210ENST00000534556 SMC1BQ8NDV3 1235 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 CDC5LQ99459 802 aaKnown RBP6.42□□□□□ -1.38
USH1C-210ENST00000534556 MEIS3Q99687 375 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 C9orf78Q9NZ63 289 aaPredicted RBP6.42□□□□□ -1.38
USH1C-210ENST00000534556 ANKIB1Q9P2G1 1089 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 CNOT7Q9UIV1 285 aaKnown RBP6.42□□□□□ -1.38
USH1C-210ENST00000534556 RIPOR2Q9Y4F9 1068 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.42□□□□□ -1.38
USH1C-210ENST00000534556 AOX1Q06278 1338 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 OTOFQ9HC10 1997 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 MED23Q9ULK4 1368 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 ZNF609O15014 1411 aa6.42□□□□□ -1.38
USH1C-210ENST00000534556 THSD7BQ9C0I4 1608 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 ANKRD18BA2A2Z9 1011 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 CT47B1P0C2W7 299 aaPredicted RBP6.41□□□□□ -1.38
USH1C-210ENST00000534556 RLBP1P12271 317 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 TRIM27P14373 513 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 ATP2B4P23634 1241 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 APLP1P51693 650 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 DACT2Q5SW24 774 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 CST9Q5W186 159 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 CNTROBQ8N137 903 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 VGLL2Q8N8G2 317 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 ZC3H12CQ9C0D7 883 aaKnown RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms