RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 MICALL2Q8IY33 904 aa22.87■■□□□ 1.25
PCF11-206ENST00000533018 WDR33Q9C0J8 1336 aaKnown RBP22.86■■□□□ 1.25
PCF11-206ENST00000533018 SHTN1A0MZ66 631 aa22.86■■□□□ 1.25
PCF11-206ENST00000533018 ZNF316A6NFI3 1004 aaPredicted RBP22.86■■□□□ 1.25
PCF11-206ENST00000533018 UFL1O94874 794 aa22.86■■□□□ 1.25
PCF11-206ENST00000533018 SLC4A2P04920 1241 aa22.86■■□□□ 1.25
PCF11-206ENST00000533018 CST9Q5W186 159 aa22.86■■□□□ 1.25
PCF11-206ENST00000533018 ANKRD18AQ8IVF6 992 aa22.85■■□□□ 1.25
PCF11-206ENST00000533018 TRPM4Q8TD43 1214 aa22.85■■□□□ 1.25
PCF11-206ENST00000533018 GLIS2Q9BZE0 524 aaPredicted RBP22.85■■□□□ 1.25
PCF11-206ENST00000533018 ZNF408Q9H9D4 720 aa22.85■■□□□ 1.25
PCF11-206ENST00000533018 GGA1Q9UJY5 639 aa22.85■■□□□ 1.25
PCF11-206ENST00000533018 CELF2O95319 508 aaKnown RBP22.84■■□□□ 1.25
PCF11-206ENST00000533018 HIRAP54198 1017 aaPredicted RBP22.84■■□□□ 1.25
PCF11-206ENST00000533018 ZC3H15Q8WU90 426 aaKnown RBP22.84■■□□□ 1.25
PCF11-206ENST00000533018 KCNQ5Q9NR82 932 aa22.84■■□□□ 1.25
PCF11-206ENST00000533018 IGKV5-2P06315 115 aa22.83■■□□□ 1.25
PCF11-206ENST00000533018 CWF19L2Q2TBE0 894 aaKnown RBP22.83■■□□□ 1.25
PCF11-206ENST00000533018 G2E3Q7L622 706 aa22.83■■□□□ 1.25
PCF11-206ENST00000533018 DPF2Q92785 391 aa22.83■■□□□ 1.25
PCF11-206ENST00000533018 WBP1LQ9NX94 342 aa22.83■■□□□ 1.25
PCF11-206ENST00000533018 PODXL2Q9NZ53 605 aa22.83■■□□□ 1.25
PCF11-206ENST00000533018 IL16Q14005 1332 aa22.82■■□□□ 1.24
PCF11-206ENST00000533018 ECE1P42892 770 aa22.82■■□□□ 1.24
PCF11-206ENST00000533018 CTCFP49711 727 aaPredicted RBP22.82■■□□□ 1.24
PCF11-206ENST00000533018 MAP2K1Q02750 393 aaPredicted RBP22.82■■□□□ 1.24
PCF11-206ENST00000533018 TBC1D10BQ4KMP7 808 aaPredicted RBP22.82■■□□□ 1.24
PCF11-206ENST00000533018 RBM26Q5T8P6 1007 aaKnown RBP22.82■■□□□ 1.24
PCF11-206ENST00000533018 CYP4F22Q6NT55 531 aa22.82■■□□□ 1.24
PCF11-206ENST00000533018 CDC37L1Q7L3B6 337 aa22.82■■□□□ 1.24
PCF11-206ENST00000533018 SAMD7Q7Z3H4 446 aa22.82■■□□□ 1.24
PCF11-206ENST00000533018 CAPNS2Q96L46 248 aa22.82■■□□□ 1.24
PCF11-206ENST00000533018 PGAP2Q9UHJ9 254 aa22.82■■□□□ 1.24
PCF11-206ENST00000533018 MYH3P11055 1940 aa22.82■■□□□ 1.24
PCF11-206ENST00000533018 CTSWP56202 376 aa22.81■■□□□ 1.24
PCF11-206ENST00000533018 CDC5LQ99459 802 aaKnown RBP22.81■■□□□ 1.24
PCF11-206ENST00000533018 TLL2Q9Y6L7 1015 aa22.81■■□□□ 1.24
PCF11-206ENST00000533018 NEURL1BA8MQ27 555 aa22.8■■□□□ 1.24
PCF11-206ENST00000533018 RPS12P25398 132 aaKnown RBP22.8■■□□□ 1.24
PCF11-206ENST00000533018 FANCIQ9NVI1 1328 aa22.8■■□□□ 1.24
PCF11-206ENST00000533018 POLR2AP24928 1970 aaKnown RBP22.8■■□□□ 1.24
PCF11-206ENST00000533018 RTL9Q8NET4 1388 aa22.79■■□□□ 1.24
PCF11-206ENST00000533018 FLIIQ13045 1269 aa22.79■■□□□ 1.24
PCF11-206ENST00000533018 FKBP5Q13451 457 aaPredicted RBP22.79■■□□□ 1.24
PCF11-206ENST00000533018 NCBP3Q53F19 620 aaKnown RBP22.79■■□□□ 1.24
PCF11-206ENST00000533018 UBE3BQ7Z3V4 1068 aa22.79■■□□□ 1.24
PCF11-206ENST00000533018 USP48Q86UV5 1035 aa22.79■■□□□ 1.24
PCF11-206ENST00000533018 SPEF2Q9C093 1822 aa22.79■■□□□ 1.24
PCF11-206ENST00000533018 XDHP47989 1333 aa22.79■■□□□ 1.24
PCF11-206ENST00000533018 SCN9AQ15858 1988 aa22.78■■□□□ 1.24
PCF11-206ENST00000533018 LBX1P52954 281 aa22.78■■□□□ 1.24
PCF11-206ENST00000533018 TTLL11Q8NHH1 800 aa22.78■■□□□ 1.24
PCF11-206ENST00000533018 BEGAINQ9BUH8 593 aa22.78■■□□□ 1.24
PCF11-206ENST00000533018 GREM2Q9H772 168 aa22.78■■□□□ 1.24
PCF11-206ENST00000533018 CACNA1FO60840 1977 aa22.78■■□□□ 1.24
PCF11-206ENST00000533018 ATP2B4P23634 1241 aa22.77■■□□□ 1.24
PCF11-206ENST00000533018 SAPCD2Q86UD0 394 aa22.77■■□□□ 1.24
PCF11-206ENST00000533018 WDR63Q8IWG1 891 aa22.77■■□□□ 1.24
PCF11-206ENST00000533018 PRDM10Q9NQV6 1147 aa22.77■■□□□ 1.24
PCF11-206ENST00000533018 EGFRP00533 1210 aa22.76■■□□□ 1.23
PCF11-206ENST00000533018 VIL1P09327 827 aaKnown RBP22.76■■□□□ 1.23
PCF11-206ENST00000533018 FAM9BQ8IZU0 186 aa22.76■■□□□ 1.23
PCF11-206ENST00000533018 DCPSQ96C86 337 aaKnown RBP22.76■■□□□ 1.23
PCF11-206ENST00000533018 H7C1W4 665 aa22.75■■□□□ 1.23
PCF11-206ENST00000533018 EXOSC9Q06265 439 aaKnown RBP22.75■■□□□ 1.23
PCF11-206ENST00000533018 KRT26Q7Z3Y9 468 aa22.75■■□□□ 1.23
PCF11-206ENST00000533018 DNAAF4Q8WXU2 420 aa22.75■■□□□ 1.23
PCF11-206ENST00000533018 MYH16Q9H6N6 1097 aa22.75■■□□□ 1.23
PCF11-206ENST00000533018 AOC2O75106 756 aa22.74■■□□□ 1.23
PCF11-206ENST00000533018 VAMP4O75379 141 aa22.74■■□□□ 1.23
PCF11-206ENST00000533018 IGHMBP2P38935 993 aaKnown RBP22.74■■□□□ 1.23
PCF11-206ENST00000533018 GCKRQ14397 625 aa22.74■■□□□ 1.23
PCF11-206ENST00000533018 KIF4BQ2VIQ3 1234 aa22.74■■□□□ 1.23
PCF11-206ENST00000533018 DLK2Q6UY11 383 aa22.74■■□□□ 1.23
PCF11-206ENST00000533018 BSDC1Q9NW68 430 aaPredicted RBP22.74■■□□□ 1.23
PCF11-206ENST00000533018 MINPP1Q9UNW1 487 aa22.74■■□□□ 1.23
PCF11-206ENST00000533018 HSPA8P11142 646 aaKnown RBP22.72■■□□□ 1.23
PCF11-206ENST00000533018 RSBN1LQ6PCB5 846 aaPredicted RBP22.72■■□□□ 1.23
PCF11-206ENST00000533018 WTIPA6NIX2 430 aaPredicted RBP22.71■■□□□ 1.23
PCF11-206ENST00000533018 MAP2K2P36507 400 aa22.71■■□□□ 1.23
PCF11-206ENST00000533018 AGBL3Q8NEM8 1001 aa22.71■■□□□ 1.23
PCF11-206ENST00000533018 LINS1Q8NG48 757 aa22.71■■□□□ 1.23
PCF11-206ENST00000533018 FBXW7Q969H0 707 aa22.71■■□□□ 1.23
PCF11-206ENST00000533018 MPHOSPH8Q99549 860 aa22.71■■□□□ 1.23
PCF11-206ENST00000533018 USP17L3A6NCW0 530 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 USP17L4A6NCW7 530 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 ADM5C9JUS6 153 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 ITGA6P23229 1130 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 CCT4P50991 539 aaKnown RBP22.7■■□□□ 1.22
PCF11-206ENST00000533018 HUNKP57058 714 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 USP17L1Q7RTZ2 530 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 PODNQ7Z5L7 613 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 SULF1Q8IWU6 871 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 HHIPL1Q96JK4 782 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 GGA3Q9NZ52 723 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 PSME4Q14997 1843 aa22.7■■□□□ 1.22
PCF11-206ENST00000533018 FAM161AQ3B820 660 aa22.69■■□□□ 1.22
PCF11-206ENST00000533018 THSD7BQ9C0I4 1608 aa22.68■■□□□ 1.22
PCF11-206ENST00000533018 MED23Q9ULK4 1368 aa22.68■■□□□ 1.22
PCF11-206ENST00000533018 USP17L8P0C7I0 530 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms